Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0643
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4QJ08 Cluster: Putative uncharacterized protein; n=3; ...    33   6.7  
UniRef50_Q7PLQ8 Cluster: CG40383-PA.3; n=1; Drosophila melanogas...    33   8.9  

>UniRef50_Q4QJ08 Cluster: Putative uncharacterized protein; n=3;
            Leishmania|Rep: Putative uncharacterized protein -
            Leishmania major
          Length = 2356

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 355  YKHKT*KC-STAATVNLFCQH*FSENDLGICLTSGSSS---GTLPIHDSDNMVQSH 200
            Y H   +C STA T  +   + FS+  + + LT  SSS   GT    DSD+   SH
Sbjct: 1598 YAHAPVECVSTATTATVLRMNGFSDESVRVLLTRASSSSTDGTAIASDSDSFASSH 1653


>UniRef50_Q7PLQ8 Cluster: CG40383-PA.3; n=1; Drosophila
           melanogaster|Rep: CG40383-PA.3 - Drosophila melanogaster
           (Fruit fly)
          Length = 81

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 269 LSYLGKFVGHFAHPRQRQYGAVTFRIHVSLEVKMHLRNLTCKY 141
           ++YL  F   F++ RQ+Q     + I+ SL + M+L NL C Y
Sbjct: 38  ITYLNNFFKIFSNLRQKQKPIALYFIYFSLYLFMYLFNLLCTY 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,327,702
Number of Sequences: 1657284
Number of extensions: 10864606
Number of successful extensions: 21116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21113
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)