Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0643
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    28   1.5  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   4.5  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    26   6.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   6.0  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   7.9  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.9  

>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 161 EDASSLREKRECEM*LHHIVAVVDGQSARRTSRGK 265
           E+ S L E+RE  + LH   A    QS RR++R K
Sbjct: 106 EEISKLMERRELAIRLHQQNAQYMAQSTRRSTRDK 140


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 632 RSGINRRSYNFNETSTNVNVFVIHKYF 552
           +S + +R   F E  TNV V +IH YF
Sbjct: 39  KSAVYQRYPEFLEDWTNVCVHIIHSYF 65


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +3

Query: 378 LTVPTLILAFLNHVR*VHTLHENSNICFNYVIKSTCYLSKPLTVA*CYLCAALANSGFEI 557
           L +P ++  F + +  + TL+ N    + ++I+   ++  PL       C AL+   +  
Sbjct: 135 LLLPDVLPNFPDKI--IETLYSNEK--YKFLIRFVSFVGPPLDTFRKEECYALSLVRYSF 190

Query: 558 LVYYKYIYICT 590
           L  Y Y+  CT
Sbjct: 191 LASYHYMKKCT 201


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
 Frame = +3

Query: 156 ITKMHLHFERNVNAKCDCTILSLSWMGKVPDELPEVRQIP------KSFSLN*CWQKRFT 317
           I K+  H  + +  K    ILS  + G +PD + ++  +P          ++  W K   
Sbjct: 98  IEKVGFHNRKTIYLKQMARILSEKFQGDIPDTVEDLMTLPGVGPKMGYLCMSIAWNKTVG 157

Query: 318 VAAVLHFQVLCLYLESLRT 374
           +   +H   +C  L    T
Sbjct: 158 IGVDVHVHRICNLLHWCNT 176


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 677 ISNLT**IQCDVSLKRSGINRRSYNFNETSTNVNVFVI 564
           ISN      CDVSLKR      S    E+  + +VF++
Sbjct: 19  ISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFIL 56


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 264 RQIPKSFSLN*CWQKRFTVAAVLHFQVLCLYLESLRTVLTVPTLILAFLNHVR*VHTLHE 443
           R+   SF +   ++KRF     L   +   + + L T+L +    +A L+H R +  L +
Sbjct: 40  RKALDSFMVRNNFKKRFVSGINLPILIRLHFYKKLFTILWLTVRTVALLSHARNIQCLIQ 99

Query: 444 NSN 452
            S+
Sbjct: 100 ESD 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,058
Number of Sequences: 5004
Number of extensions: 50667
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)