BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0643 (700 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 28 1.5 SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 4.5 SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po... 26 6.0 SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 6.0 SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 25 7.9 SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.9 >SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 2|||Manual Length = 560 Score = 27.9 bits (59), Expect = 1.5 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 161 EDASSLREKRECEM*LHHIVAVVDGQSARRTSRGK 265 E+ S L E+RE + LH A QS RR++R K Sbjct: 106 EEISKLMERRELAIRLHQQNAQYMAQSTRRSTRDK 140 >SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces pombe|chr 1|||Manual Length = 403 Score = 26.2 bits (55), Expect = 4.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 632 RSGINRRSYNFNETSTNVNVFVIHKYF 552 +S + +R F E TNV V +IH YF Sbjct: 39 KSAVYQRYPEFLEDWTNVCVHIIHSYF 65 >SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 295 Score = 25.8 bits (54), Expect = 6.0 Identities = 17/71 (23%), Positives = 33/71 (46%) Frame = +3 Query: 378 LTVPTLILAFLNHVR*VHTLHENSNICFNYVIKSTCYLSKPLTVA*CYLCAALANSGFEI 557 L +P ++ F + + + TL+ N + ++I+ ++ PL C AL+ + Sbjct: 135 LLLPDVLPNFPDKI--IETLYSNEK--YKFLIRFVSFVGPPLDTFRKEECYALSLVRYSF 190 Query: 558 LVYYKYIYICT 590 L Y Y+ CT Sbjct: 191 LASYHYMKKCT 201 >SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 25.8 bits (54), Expect = 6.0 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Frame = +3 Query: 156 ITKMHLHFERNVNAKCDCTILSLSWMGKVPDELPEVRQIP------KSFSLN*CWQKRFT 317 I K+ H + + K ILS + G +PD + ++ +P ++ W K Sbjct: 98 IEKVGFHNRKTIYLKQMARILSEKFQGDIPDTVEDLMTLPGVGPKMGYLCMSIAWNKTVG 157 Query: 318 VAAVLHFQVLCLYLESLRT 374 + +H +C L T Sbjct: 158 IGVDVHVHRICNLLHWCNT 176 >SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizosaccharomyces pombe|chr 1|||Manual Length = 409 Score = 25.4 bits (53), Expect = 7.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -3 Query: 677 ISNLT**IQCDVSLKRSGINRRSYNFNETSTNVNVFVI 564 ISN CDVSLKR S E+ + +VF++ Sbjct: 19 ISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFIL 56 >SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 249 Score = 25.4 bits (53), Expect = 7.9 Identities = 16/63 (25%), Positives = 30/63 (47%) Frame = +3 Query: 264 RQIPKSFSLN*CWQKRFTVAAVLHFQVLCLYLESLRTVLTVPTLILAFLNHVR*VHTLHE 443 R+ SF + ++KRF L + + + L T+L + +A L+H R + L + Sbjct: 40 RKALDSFMVRNNFKKRFVSGINLPILIRLHFYKKLFTILWLTVRTVALLSHARNIQCLIQ 99 Query: 444 NSN 452 S+ Sbjct: 100 ESD 102 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,588,058 Number of Sequences: 5004 Number of extensions: 50667 Number of successful extensions: 69 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 69 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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