Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0643
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   29   3.6  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   28   6.3  
SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)                   28   8.4  

>SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
 Frame = -1

Query: 244 GTLPIHDSDNMVQSHFAFTFLSK*RCIFVI*HVNIRV-----RTSSNHAAAASVSDAIE- 83
           G    HDS   +   +AF  ++  + I    + ++RV     RT S+H A+++VS + E 
Sbjct: 491 GFFAAHDSVGSLVIQYAFAIINSLQVIRAANNTSVRVKTMFRRTLSHHTASSNVSGSNES 550

Query: 82  -KIRCPYSEWTFLYRIRLF 29
            +++  Y+E  F  RI  F
Sbjct: 551 KRVKAEYNEGAFSPRIEHF 569


>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = -2

Query: 453 YSSFRAMYVLTLRDLGTLILE*AR*VLYAEILNINIRLENAVLRRP 316
           Y+S R  Y+L   D G L++  AR VLY+     +I+L +++ RRP
Sbjct: 531 YTSGRLKYLL---DSGDLVMAAAREVLYSVGKKDSIKLPHSIARRP 573


>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +3

Query: 453 ICFNYVIKSTCYLSKPLTVA*CYLCAALA-NSGFE---ILVYYKYIY 581
           +CF  + +  C +  P  +A   +CA LA N GF+   ILV Y  +Y
Sbjct: 122 VCFIQLKQKKCEIPPPKKIASDVMCACLAYNDGFQGVIILVDYLVVY 168


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 237 CPSTTATIWCSHISHSRFSRSEDAS 163
           CPS   ++ C+  SHS FSR +D S
Sbjct: 15  CPSCVLSLVCAVPSHSSFSRVDDGS 39


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 230 DGQSARRTSRGKTDT*IVFTELVLAKKIHGRRSTAFSSLMFIFRISAYSTYRAYSNIS-V 406
           DG+SARR ++ K+D  +  T     K+I G      S    I+ +S   T + YS  S +
Sbjct: 600 DGRSARRNAKFKSDNQLTTTSFQADKQIFGNEEAVTS----IWEVSGKKT-QFYSEQSFI 654

Query: 407 PKSRKVSTYIARKLE 451
              ++  +Y   +L+
Sbjct: 655 SPDKEFESYTPHRLQ 669


>SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)
          Length = 908

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 302 AKKIHGRRSTAFSSLMFIFRISAYSTYRAYSNISVPKSRKVSTYI 436
           A  +HGR S     +  + R S  S+Y    NI +P   K+S Y+
Sbjct: 4   ASYLHGRSSFVIQVVYHLIRNSGTSSYIVNGNIPIP--GKISEYV 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,165,192
Number of Sequences: 59808
Number of extensions: 375797
Number of successful extensions: 725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)