Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0643
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X73975-1|CAA52155.1| 1146|Drosophila melanogaster integrin protein.    30   3.5  
AY075338-1|AAL68203.1| 1049|Drosophila melanogaster GH14509p pro...    29   8.0  
AE014298-1867|AAN09652.1| 1049|Drosophila melanogaster CG1771-PA...    29   8.0  
AE014298-1866|AAF48242.2| 1146|Drosophila melanogaster CG1771-PB...    29   8.0  

>X73975-1|CAA52155.1| 1146|Drosophila melanogaster integrin protein.
          Length = 1146

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 605 NFNETSTNVNVFVIHKYFKSGIS*RGT*VALCNSQRFT*VACRFNNIIKANIRVFVQCMY 426
           N  +++    +F+ H+   S ++ +    A CNS   T VAC   N I  +   FV   +
Sbjct: 683 NLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPIVRDTTTFVTIRF 742

Query: 425 LP 420
            P
Sbjct: 743 QP 744


>AY075338-1|AAL68203.1| 1049|Drosophila melanogaster GH14509p
           protein.
          Length = 1049

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 605 NFNETSTNVNVFVIHKYFKSGIS*RGT*VALCNSQRFT*VACRFNNIIKANIRVFVQCMY 426
           N  +++    +F+ H+   S ++ +    A CNS   T VAC   N +  +   FV   +
Sbjct: 586 NLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPMLRDTTTFVTIRF 645

Query: 425 LP 420
            P
Sbjct: 646 QP 647


>AE014298-1867|AAN09652.1| 1049|Drosophila melanogaster CG1771-PA,
           isoform A protein.
          Length = 1049

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 605 NFNETSTNVNVFVIHKYFKSGIS*RGT*VALCNSQRFT*VACRFNNIIKANIRVFVQCMY 426
           N  +++    +F+ H+   S ++ +    A CNS   T VAC   N +  +   FV   +
Sbjct: 586 NLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPMLRDTTTFVTIRF 645

Query: 425 LP 420
            P
Sbjct: 646 QP 647


>AE014298-1866|AAF48242.2| 1146|Drosophila melanogaster CG1771-PB,
           isoform B protein.
          Length = 1146

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 605 NFNETSTNVNVFVIHKYFKSGIS*RGT*VALCNSQRFT*VACRFNNIIKANIRVFVQCMY 426
           N  +++    +F+ H+   S ++ +    A CNS   T VAC   N +  +   FV   +
Sbjct: 683 NLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPMLRDTTTFVTIRF 742

Query: 425 LP 420
            P
Sbjct: 743 QP 744


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,089,772
Number of Sequences: 53049
Number of extensions: 529747
Number of successful extensions: 997
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)