BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0643 (700 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value X73975-1|CAA52155.1| 1146|Drosophila melanogaster integrin protein. 30 3.5 AY075338-1|AAL68203.1| 1049|Drosophila melanogaster GH14509p pro... 29 8.0 AE014298-1867|AAN09652.1| 1049|Drosophila melanogaster CG1771-PA... 29 8.0 AE014298-1866|AAF48242.2| 1146|Drosophila melanogaster CG1771-PB... 29 8.0 >X73975-1|CAA52155.1| 1146|Drosophila melanogaster integrin protein. Length = 1146 Score = 29.9 bits (64), Expect = 3.5 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = -3 Query: 605 NFNETSTNVNVFVIHKYFKSGIS*RGT*VALCNSQRFT*VACRFNNIIKANIRVFVQCMY 426 N +++ +F+ H+ S ++ + A CNS T VAC N I + FV + Sbjct: 683 NLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPIVRDTTTFVTIRF 742 Query: 425 LP 420 P Sbjct: 743 QP 744 >AY075338-1|AAL68203.1| 1049|Drosophila melanogaster GH14509p protein. Length = 1049 Score = 28.7 bits (61), Expect = 8.0 Identities = 16/62 (25%), Positives = 28/62 (45%) Frame = -3 Query: 605 NFNETSTNVNVFVIHKYFKSGIS*RGT*VALCNSQRFT*VACRFNNIIKANIRVFVQCMY 426 N +++ +F+ H+ S ++ + A CNS T VAC N + + FV + Sbjct: 586 NLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPMLRDTTTFVTIRF 645 Query: 425 LP 420 P Sbjct: 646 QP 647 >AE014298-1867|AAN09652.1| 1049|Drosophila melanogaster CG1771-PA, isoform A protein. Length = 1049 Score = 28.7 bits (61), Expect = 8.0 Identities = 16/62 (25%), Positives = 28/62 (45%) Frame = -3 Query: 605 NFNETSTNVNVFVIHKYFKSGIS*RGT*VALCNSQRFT*VACRFNNIIKANIRVFVQCMY 426 N +++ +F+ H+ S ++ + A CNS T VAC N + + FV + Sbjct: 586 NLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPMLRDTTTFVTIRF 645 Query: 425 LP 420 P Sbjct: 646 QP 647 >AE014298-1866|AAF48242.2| 1146|Drosophila melanogaster CG1771-PB, isoform B protein. Length = 1146 Score = 28.7 bits (61), Expect = 8.0 Identities = 16/62 (25%), Positives = 28/62 (45%) Frame = -3 Query: 605 NFNETSTNVNVFVIHKYFKSGIS*RGT*VALCNSQRFT*VACRFNNIIKANIRVFVQCMY 426 N +++ +F+ H+ S ++ + A CNS T VAC N + + FV + Sbjct: 683 NLADSAYEAQLFIAHQAGVSYVATKKPTNATCNSYNTTLVACSLGNPMLRDTTTFVTIRF 742 Query: 425 LP 420 P Sbjct: 743 QP 744 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 27,089,772 Number of Sequences: 53049 Number of extensions: 529747 Number of successful extensions: 997 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 997 length of database: 24,988,368 effective HSP length: 83 effective length of database: 20,585,301 effective search space used: 3067209849 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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