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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0642
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    52   1e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    42   8e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    42   1e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    41   1e-04
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       40   2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    40   3e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    39   5e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    39   7e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    39   7e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    38   0.001
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    38   0.001
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    36   0.004
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    35   0.012
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    34   0.015
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    34   0.015
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    33   0.027
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    33   0.036
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    33   0.047
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    33   0.047
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    33   0.047
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    32   0.062
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    30   0.25 
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom...    30   0.25 
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    30   0.25 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   0.58 
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    29   0.58 
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    29   0.77 
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    28   1.3  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    28   1.3  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   1.8  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   1.8  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    27   1.8  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    27   1.8  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   2.3  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   3.1  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   3.1  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.1  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   4.1  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   4.1  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   5.4  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   9.5  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    25   9.5  

>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 40/69 (57%)
 Frame = +3

Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
           ++F+G +  + T  D+   F+ YG +++C ++  +GFV +E+ +  R+ + +  G+   G
Sbjct: 5   RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64

Query: 297 QAIKIEAAK 323
             I +E A+
Sbjct: 65  SRIVVEPAR 73



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 31/55 (56%)
 Frame = +1

Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 519
           ++FVG +  +    ++ + F+ +G +++C ++  +GFV ++   D  D + +  G
Sbjct: 5   RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQG 59



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = +3

Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY---GFVHMENEQVGREAIQNLNGE 284
           F++ + NLS+  +  DL+ +  K G     D  R     G V    E+  R A+ +LNGE
Sbjct: 98  FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157

Query: 285 LVHGQAIKIEAAKSPEGA 338
           ++ GQA+ +   + P+ A
Sbjct: 158 VIKGQAVTLR--EDPDAA 173


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
           +F+  ++ +  E +L+ +F K+GTV    I+R         +GF+     +    AI NL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162

Query: 276 NGELVHGQAIKIEAAK 323
           N +  +G+ + ++ AK
Sbjct: 163 NSQEFYGRVLNVQKAK 178



 Score = 32.7 bits (71), Expect = 0.047
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 513
           +FV  +  + +  E++++F KFGTV    I+        R +GF+      +   AI  L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162

Query: 514 N 516
           N
Sbjct: 163 N 163


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
 Frame = +3

Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 266
           GT  +FI NL        L   F  +G ++ C +        + YGFVH ++ +    AI
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225

Query: 267 QNLNGELVHGQAIKI 311
           +++NG L++ + + +
Sbjct: 226 EHVNGMLLNDKKVYV 240



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
           +F+ NL        + + F  FG ++ C +        + YGFVH D+    N AI+ +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229

Query: 517 GI 522
           G+
Sbjct: 230 GM 231



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
           +++G L    TEA L  LF   G V    + R+        Y +V+  N + G +A+  L
Sbjct: 82  LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141

Query: 276 NGELVHGQAIKI 311
           N  L+ G+  +I
Sbjct: 142 NYTLIKGRPCRI 153



 Score = 33.9 bits (74), Expect = 0.020
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
           +FI NL D+  +  L+  F  +GT+    I+       + +GFV     +   +A+  +N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425

Query: 279 GELVHGQAIKIEAAKSPE 332
             ++ G+ + +  A+  E
Sbjct: 426 QRMLAGKPLYVALAQRKE 443



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
           +++ NL  +    E  +LF +FG +    +V       R +GFV+         A+ ELN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +3

Query: 66  FFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHME 239
           F+  + P  +   T    +F+G LS   +E +L+ LF+ +G +V   I   +  GFV   
Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346

Query: 240 NEQVGREAIQNLNGELVHGQAIKI 311
           N Q    AI  L G  +    I++
Sbjct: 347 NRQSAEIAINQLQGYPLGNSRIRL 370



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 114 FKIFIGNLSDKTTEADLRPLFE---------KYGTVVECDIVRNYGFVHMENEQVGREAI 266
           + IF+G+LS    E D+  LF          K  T  + ++ R YGFV   +E   + A+
Sbjct: 186 YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSAL 245

Query: 267 QNLNGELVHGQAIKIEAA 320
             + G++   + I++  A
Sbjct: 246 AEMQGQICGDRPIRVGLA 263



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 519
           +FVG L+      E++ LFQ FG +V   I   +  GFV          AI +L G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQG 360



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQ---------KFGTVVECDIVRNYGFVHLDATGDVNDAIKE 510
           IFVG+L+      +V  LF          K  T  + ++ R YGFV      D   A+ E
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247

Query: 511 LNG-IDGRRTAHEG 549
           + G I G R    G
Sbjct: 248 MQGQICGDRPIRVG 261


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +3

Query: 117 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVH 293
           ++F+G+L+ K+ ++ +L  +F+ YG + +  +  NYGFV     +    A+    G  V 
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423

Query: 294 GQAIKIEAAK 323
           GQ + +E +K
Sbjct: 424 GQKLHLEISK 433



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 355 KIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 519
           ++F+G+L  K+ +   + ++F+ +G + +  +  NYGFV      D   A+    G
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQG 419


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
 Frame = +3

Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDI----VR--------NYGFVHMENEQVGR 257
           F++F+G LS  T ++++R LFE  GTV +  I    VR           FV   N++   
Sbjct: 44  FRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVD 103

Query: 258 EAIQNLNGELVHGQAIKIEAAK 323
           +AI+ LNG+ +  + I ++ A+
Sbjct: 104 KAIETLNGKTLDDREIVVQKAR 125



 Score = 33.1 bits (72), Expect = 0.036
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
 Frame = +1

Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDI----VR--------NYGFVHLDATGDVND 498
           ++FVG L+  T+  E+R LF+  GTV +  I    VR           FV  +   DV+ 
Sbjct: 45  RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104

Query: 499 AIKELNG 519
           AI+ LNG
Sbjct: 105 AIETLNG 111



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 213 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAA 320
           R +GFV   N +    AI+ +NG+ V    + +++A
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 11/69 (15%)
 Frame = +3

Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI-- 266
           K+FIG L+ +TT+  LR  FE++G V++C ++R+        +GF+  +N +   E +  
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223

Query: 267 -QNLNGELV 290
             +L+G+++
Sbjct: 224 EHHLDGKII 232



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
 Frame = +1

Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
           K+F+G L  +T    +R+ F++FG V++C ++R+        +GF+       VN+ + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223

Query: 511 LNGIDGR 531
            + +DG+
Sbjct: 224 EHHLDGK 230



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 450
           K+FVG +       E R  F +FG V++  ++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
 Frame = +3

Query: 75  HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGF 227
           H+N  S+ P    F IF+G+L   T ++DL   F   Y +     I+        R YGF
Sbjct: 172 HNNFVSRDP---EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGF 228

Query: 228 VHMENEQVGREAIQNLNGELVHGQAIKIEAAKSPE 332
           V   +E+  + A+ ++ G L  G+ ++I  A SP+
Sbjct: 229 VRFSSEKEQQHALMHMQGYLCQGRPLRISVA-SPK 262


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
 Frame = +3

Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQN 272
           F++F+GNL +   +  L   F +Y ++V+  +VR+       +GFV  ++     +A + 
Sbjct: 30  FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89

Query: 273 LNGELVHGQAIKIEAAKS 326
            NG+ +  + +K+  A S
Sbjct: 90  KNGKYIGSRPVKLSRATS 107



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +1

Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 513
           ++FVGNL +      + + F ++ ++V+  +VR+       +GFV    +     A +E 
Sbjct: 31  RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90

Query: 514 NG 519
           NG
Sbjct: 91  NG 92


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNL 275
           +F+GNL +  TE ++R   E +G + +  IV  RN  FVH  N     +A+Q L
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261



 Score = 33.5 bits (73), Expect = 0.027
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKEL 513
           +F+GNL +     E+RE  + FG + +  IV  RN  FVH         A++EL
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261



 Score = 29.9 bits (64), Expect = 0.33
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR--NYGFVHLDATGD-VN--DAIKELNGI 522
           I++GN  D      ++E F++FG +   +  R  N  FV+  +    +N  D IK+  G 
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRIKQKKGY 475

Query: 523 DGRRTAHEGXSC 558
           +  R ++    C
Sbjct: 476 ENYRISYGKDRC 487



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVHMENEQVGREAIQNL 275
           G  +  I+IGN  D  T   L+  FE++G +   +  R  N  FV+  +      AI  +
Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
           I++GNL   T++ +L  LF   G+V+   I        + +G V  ENE     +I+ LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341

Query: 279 GELVHGQAIKIEAA 320
           G    G+ +++  A
Sbjct: 342 GYRYGGRPLQLSYA 355



 Score = 29.5 bits (63), Expect = 0.44
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 450
           +++VGNL+ + R  E++E   + G V+ C+I+
Sbjct: 67  RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98



 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
           I+VGNL   T    + +LF   G+V+   I        + +G V  +   D   +I++LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341

Query: 517 G 519
           G
Sbjct: 342 G 342



 Score = 29.1 bits (62), Expect = 0.58
 Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
 Frame = +3

Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 275
           ++++GNLS +    +L+    + G V+ C+I+       +    +     +  R AI+ L
Sbjct: 67  RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126

Query: 276 NGELVHGQAIKIEAAKSPEGAVDANH*NIRG*FNGQDA 389
           + +   G+ + I   +       ++  +     NG+D+
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDS 164


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAIQNLN 278
           + +GNL+   TE+ L   F  +G ++       E  + R+Y FV  +  +  +EA++N+N
Sbjct: 8   VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67

Query: 279 GELVHGQAIKIEAA 320
             ++  + I++  A
Sbjct: 68  YSILCDRCIRVSPA 81


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
 Frame = +1

Query: 358 IFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDATGDVNDAIK 507
           +FV NL D       ++ ELF KFG +  C        +I + YGFV      +   AI 
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480

Query: 508 ELNGI 522
            LNG+
Sbjct: 481 TLNGV 485



 Score = 33.5 bits (73), Expect = 0.027
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------------YGFVHMENEQVGRE 260
           I++GNL      +DL  LFE +G   +  ++               + F+  EN+     
Sbjct: 22  IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81

Query: 261 AIQNLNGELVHGQAIKIE 314
           AI +LNG    G  +K+E
Sbjct: 82  AIASLNGSSFQGNTLKVE 99



 Score = 32.7 bits (71), Expect = 0.047
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
 Frame = +3

Query: 120 IFIGNLSDKTT--EADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQ 269
           +F+ NL D        L  LF K+G +  C        +I + YGFV   +     +AI 
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480

Query: 270 NLNGELVHGQAIKIEAAKSPE 332
            LNG L   + + +  A+  E
Sbjct: 481 TLNGVLFGKKRLFVNYAEKRE 501



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFG 426
           I+VGNL    ++ ++ ELF+ FG
Sbjct: 22  IYVGNLPSTCQSSDLHELFEPFG 44


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNG 281
           +FI NLS K T  ++  LF +YG V +  +      R   FV  EN Q  R A + L+G
Sbjct: 14  LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIK 507
           +F+GNL       E+ E F KFG +    I+  +N  FVH     ++ DAIK
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHF---LNIRDAIK 349



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLN 278
           +FIGNL     E ++   F K+G +    I+  +N  FVH  N +   + ++ L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAIQNL 275
           ++  ++SD  T  +L  +  +YG +     ++N   GFV   N     +A+  L
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
           +F+  LS  T E+D+   F +YG +    +VRN        Y FV  E E+  + A +  
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161

Query: 276 NGELVHGQAIKIEAAK 323
            G +++G+ I ++  +
Sbjct: 162 AGLMLNGRRIVVDVER 177


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +3

Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 266
           T  +F+G LS    +  L   FE+YGT+V   ++        + YG+V  E  +  + A+
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321

Query: 267 QNLNGELVHGQAIKIE 314
                + + G+ + ++
Sbjct: 322 AANGTKEIDGRMVNLD 337



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--------VRNYGFVHMENEQVGREAIQNL 275
           +F+GNLS   TE DL   F   G +    +        ++ +G+V   +    ++ ++ +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426

Query: 276 NGELVHGQAIKIE 314
           NG  + G+  +++
Sbjct: 427 NGHFIAGRPCRLD 439


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
           +F+ NL+ +T + DL   F   G +    +V N        YGFV     +  + A + L
Sbjct: 7   LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66

Query: 276 NGELVHGQAIKIEAA 320
             + +HG+ ++++ A
Sbjct: 67  KNKKLHGRILRLDFA 81



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
           +FV NL  +T+  ++   F   G +    +V N        YGFV      D   A KEL
Sbjct: 7   LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 474
           +F+G +T   R P +R +F++FG+V    +  NY  GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVGREA 263
           +F+G ++    E  LR +FE++G+V    +  NY  GF+ M       +A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = +3

Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGE 284
           T  +++GNL    +   +   F  YGTV    ++  ++  F++ ++ +  +  ++ LNG+
Sbjct: 586 THALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGK 645

Query: 285 LVH--GQAIKIEAAKSPEGAVDANH*NIRG 368
            +      + I  AK    + +++H  + G
Sbjct: 646 RIFFGSDPVCISFAKVASSSSESSHSAVDG 675



 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 519
           ++VGNL     A  V   F  +GTV    ++  ++  F++ D+       ++ELNG
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNG 644


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +3

Query: 99  PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGRE 260
           P    + IF+G L     T   L  LF KYG V++C I+       + F+  +++Q    
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419

Query: 261 AI 266
           A+
Sbjct: 420 AV 421


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
 Frame = +3

Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNL 275
           ++ + N+    T+ D++ +FE +G +    + R+       +G++   N    R A++ +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400

Query: 276 NGELVHGQAIKI 311
           NG  + G+ +++
Sbjct: 401 NGFDLAGRNMRV 412



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
           +F+  L+++ T  +L   FE+ G V +  IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
           +FV  L ++  + E+ + F++ G V +  IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274


>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRP----LFEKYGTVVE-----CDIVRNYGFVHMENEQVGREAIQN 272
           +++ NL+DK  + DLR     LF  YGTVV+        +R    V   +      A++ 
Sbjct: 6   LYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKA 65

Query: 273 LNGELVHGQAIKIEAAKSPEGAVD 344
           L   +  G+ +KI+ A S    ++
Sbjct: 66  LKNFIFFGKEMKIQYAHSKSKIIE 89


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 364 VGNLTDKTRAPEVRELFQKFGTV 432
           V NL+D TR  E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
           +FV  L   T+  ++  +F +FG ++ C ++R+        Y F+  D    V  A  ++
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305

Query: 514 NGI 522
             +
Sbjct: 306 QNV 308


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +3

Query: 114 FKIFIGNLSDKTTEADLRPLFEKY----GTVVEC--DIVRNYGFVHMENEQVGREAIQNL 275
           + +FI N+  + +E D++ LF++Y      V+ C      +  F+ + NE   + A   +
Sbjct: 73  YMLFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEM 132

Query: 276 NGELVHGQAIKIEAAKS 326
            G     ++I + + KS
Sbjct: 133 QGAFCLKRSILVHSVKS 149


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTV 194
           +F+GNL  +TT+ADL+  F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
 Frame = +3

Query: 63  LFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYGF 227
           +F   +N  + +     + + + N+S  TT   L+    KY +++  +I         G 
Sbjct: 118 MFIQQNNILNMLVNLMKYFVHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLKKGI 177

Query: 228 VHMENEQVGREAIQNLNGELVHGQAIKIEAAKSPEGAVDANH 353
              ++     +A+Q L+   + G+ I       P+   +A H
Sbjct: 178 AIFQDLSDAEQAVQYLSNCKIDGRLISATITNHPKRLPNAEH 219


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
           +F+GN+    +E  +  +F + G V    +V        + YGF    + +    A++ L
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query: 276 NGELVHGQAIKIE 314
           N   +  + I++E
Sbjct: 69  NNSELGPRKIRVE 81


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
           ++F+ N+S   T   LR  F+ +G V + D+  N
Sbjct: 95  QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
           ++FV N++    + ++R  F+ FG V + D+  N
Sbjct: 95  QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 627 PRATAGKTARGRPCPAAAGHDS-STTXTLMGCPSTINTVQLFDSVVHIARRVQMH 466
           P + A  TA  RP   AAG+ S S    L+ C  T+   ++   +  +  RV MH
Sbjct: 553 PLSGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIRELTERV-MH 606


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTV 194
           +++GNLS  TTE  +  LF K G +
Sbjct: 34  VYVGNLSFYTTEEQIYALFSKCGEI 58


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 558 TTXTLMGCPSTINTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLAD 400
           T   +  C S   TV L+DS     R+   HE  V     L + P LL   AD
Sbjct: 295 TALPICACASVDGTVALYDSASLKFRKSLPHEQAVIDCKFLPNTPYLLTACAD 347


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 97  CRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKSAAKP 264
           CR+ VL      T  I     ILD  SK +V   +A+S  +T+ C  K   S   P
Sbjct: 236 CRSCVLIVGQRSTNSILLVYQILDGLSKKSVDYTDAVSLRMTLICLQKLEPSEHDP 291


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
 Frame = +3

Query: 120 IFIGNLSDK--TTEADLRPLFEKYGTVVE----C----DIVRNYGFVHMENEQVGREAIQ 269
           +++ NL D   T ++ L  LF  +G+++     C     I + YGFV     +    A  
Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443

Query: 270 NLNGELV 290
            LNG +V
Sbjct: 444 TLNGMMV 450


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 457 YGFVHLDATGDVNDAIKELNGIDGRRTAHEGXSC 558
           Y F+H    G V   IKE+  I+G     +G  C
Sbjct: 374 YSFLHTARCGSVQRTIKEIIHIEGNWKLWKGLGC 407


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 575 PDTTRRQLXPSWAVRR--PSIPFNSLIASFTSPVASKCTKP*LRTISHSTTVPNF*NSSR 402
           P+ TR    P   V+R   S P + L +S  +  AS    P  +  + S T+P++ N + 
Sbjct: 122 PNMTRAASQPPPQVQRLPASAPKHDLYSSANASSAS--LHPTEQRTTSSPTIPSYANRTH 179

Query: 401 TSGARVLSVKLP 366
           T     LS +LP
Sbjct: 180 TDSPTSLSHRLP 191


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +3

Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
           +++GN+  +  E  +  +F++ G V    +V        + YGF    +      A++NL
Sbjct: 7   VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66

Query: 276 N 278
           N
Sbjct: 67  N 67


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 450
           +I+VG L+    + ++   F +FG+V   +I+
Sbjct: 6   RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 451 RNYGFVHLDATGDVNDAIKELNGIDGRRTA 540
           RNY   +L+   DVND  K+     G +TA
Sbjct: 500 RNYSLQYLNGRPDVNDYFKDFLHATGTQTA 529


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 435 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 340
           D +    K+ AD   A+L   +THE   GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 88  NLKCR-APVLSKSSSGTFLIKPQKPILD 168
           +L+C+ +PV+ +S   +F  K + PILD
Sbjct: 211 HLRCKTSPVIEESKEISFSYKDEHPILD 238


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
           I++GNL       ++  +F +FG  V+ ++VR+
Sbjct: 33  IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,510
Number of Sequences: 5004
Number of extensions: 50308
Number of successful extensions: 242
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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