Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0642
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 52 1e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 42 8e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 42 1e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 41 1e-04
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 40 2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 3e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 39 5e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 7e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 38 0.001
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 0.001
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.004
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.012
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.015
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 34 0.015
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.027
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.036
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.047
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.047
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.047
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.062
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.25
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 30 0.25
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.25
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.58
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 29 0.58
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.77
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 28 1.3
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 1.3
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 1.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 1.8
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 1.8
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 27 1.8
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 2.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 3.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 27 3.1
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.1
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 4.1
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 4.1
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 5.4
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 9.5
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 9.5
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 51.6 bits (118), Expect = 1e-07
Identities = 18/69 (26%), Positives = 40/69 (57%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
++F+G + + T D+ F+ YG +++C ++ +GFV +E+ + R+ + + G+ G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 297 QAIKIEAAK 323
I +E A+
Sbjct: 65 SRIVVEPAR 73
Score = 41.1 bits (92), Expect = 1e-04
Identities = 12/55 (21%), Positives = 31/55 (56%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 519
++FVG + + ++ + F+ +G +++C ++ +GFV ++ D D + + G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQG 59
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY---GFVHMENEQVGREAIQNLNGE 284
F++ + NLS+ + DL+ + K G D R G V E+ R A+ +LNGE
Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157
Query: 285 LVHGQAIKIEAAKSPEGA 338
++ GQA+ + + P+ A
Sbjct: 158 VIKGQAVTLR--EDPDAA 173
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+F+ ++ + E +L+ +F K+GTV I+R +GF+ + AI NL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 276 NGELVHGQAIKIEAAK 323
N + +G+ + ++ AK
Sbjct: 163 NSQEFYGRVLNVQKAK 178
Score = 32.7 bits (71), Expect = 0.047
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 513
+FV + + + E++++F KFGTV I+ R +GF+ + AI L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 514 N 516
N
Sbjct: 163 N 163
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 266
GT +FI NL L F +G ++ C + + YGFVH ++ + AI
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
Query: 267 QNLNGELVHGQAIKI 311
+++NG L++ + + +
Sbjct: 226 EHVNGMLLNDKKVYV 240
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
+F+ NL + + F FG ++ C + + YGFVH D+ N AI+ +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 517 GI 522
G+
Sbjct: 230 GM 231
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+++G L TEA L LF G V + R+ Y +V+ N + G +A+ L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 276 NGELVHGQAIKI 311
N L+ G+ +I
Sbjct: 142 NYTLIKGRPCRI 153
Score = 33.9 bits (74), Expect = 0.020
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+FI NL D+ + L+ F +GT+ I+ + +GFV + +A+ +N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 279 GELVHGQAIKIEAAKSPE 332
++ G+ + + A+ E
Sbjct: 426 QRMLAGKPLYVALAQRKE 443
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
+++ NL + E +LF +FG + +V R +GFV+ A+ ELN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 66 FFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHME 239
F+ + P + T +F+G LS +E +L+ LF+ +G +V I + GFV
Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346
Query: 240 NEQVGREAIQNLNGELVHGQAIKI 311
N Q AI L G + I++
Sbjct: 347 NRQSAEIAINQLQGYPLGNSRIRL 370
Score = 34.7 bits (76), Expect = 0.012
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFE---------KYGTVVECDIVRNYGFVHMENEQVGREAI 266
+ IF+G+LS E D+ LF K T + ++ R YGFV +E + A+
Sbjct: 186 YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSAL 245
Query: 267 QNLNGELVHGQAIKIEAA 320
+ G++ + I++ A
Sbjct: 246 AEMQGQICGDRPIRVGLA 263
Score = 30.7 bits (66), Expect = 0.19
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 519
+FVG L+ E++ LFQ FG +V I + GFV AI +L G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQG 360
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQ---------KFGTVVECDIVRNYGFVHLDATGDVNDAIKE 510
IFVG+L+ +V LF K T + ++ R YGFV D A+ E
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 511 LNG-IDGRRTAHEG 549
+ G I G R G
Sbjct: 248 MQGQICGDRPIRVG 261
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 117 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVH 293
++F+G+L+ K+ ++ +L +F+ YG + + + NYGFV + A+ G V
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423
Query: 294 GQAIKIEAAK 323
GQ + +E +K
Sbjct: 424 GQKLHLEISK 433
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 519
++F+G+L K+ + + ++F+ +G + + + NYGFV D A+ G
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQG 419
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDI----VR--------NYGFVHMENEQVGR 257
F++F+G LS T ++++R LFE GTV + I VR FV N++
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVD 103
Query: 258 EAIQNLNGELVHGQAIKIEAAK 323
+AI+ LNG+ + + I ++ A+
Sbjct: 104 KAIETLNGKTLDDREIVVQKAR 125
Score = 33.1 bits (72), Expect = 0.036
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDI----VR--------NYGFVHLDATGDVND 498
++FVG L+ T+ E+R LF+ GTV + I VR FV + DV+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 499 AIKELNG 519
AI+ LNG
Sbjct: 105 AIETLNG 111
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 213 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAA 320
R +GFV N + AI+ +NG+ V + +++A
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.1 bits (87), Expect = 5e-04
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 11/69 (15%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI-- 266
K+FIG L+ +TT+ LR FE++G V++C ++R+ +GF+ +N + E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 267 -QNLNGELV 290
+L+G+++
Sbjct: 224 EHHLDGKII 232
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
K+F+G L +T +R+ F++FG V++C ++R+ +GF+ VN+ + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 511 LNGIDGR 531
+ +DG+
Sbjct: 224 EHHLDGK 230
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 450
K+FVG + E R F +FG V++ ++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 7e-04
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Frame = +3
Query: 75 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGF 227
H+N S+ P F IF+G+L T ++DL F Y + I+ R YGF
Sbjct: 172 HNNFVSRDP---EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGF 228
Query: 228 VHMENEQVGREAIQNLNGELVHGQAIKIEAAKSPE 332
V +E+ + A+ ++ G L G+ ++I A SP+
Sbjct: 229 VRFSSEKEQQHALMHMQGYLCQGRPLRISVA-SPK 262
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQN 272
F++F+GNL + + L F +Y ++V+ +VR+ +GFV ++ +A +
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 273 LNGELVHGQAIKIEAAKS 326
NG+ + + +K+ A S
Sbjct: 90 KNGKYIGSRPVKLSRATS 107
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 513
++FVGNL + + + F ++ ++V+ +VR+ +GFV + A +E
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 514 NG 519
NG
Sbjct: 91 NG 92
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNL 275
+F+GNL + TE ++R E +G + + IV RN FVH N +A+Q L
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 33.5 bits (73), Expect = 0.027
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKEL 513
+F+GNL + E+RE + FG + + IV RN FVH A++EL
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR--NYGFVHLDATGD-VN--DAIKELNGI 522
I++GN D ++E F++FG + + R N FV+ + +N D IK+ G
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRIKQKKGY 475
Query: 523 DGRRTAHEGXSC 558
+ R ++ C
Sbjct: 476 ENYRISYGKDRC 487
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVHMENEQVGREAIQNL 275
G + I+IGN D T L+ FE++G + + R N FV+ + AI +
Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
I++GNL T++ +L LF G+V+ I + +G V ENE +I+ LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 279 GELVHGQAIKIEAA 320
G G+ +++ A
Sbjct: 342 GYRYGGRPLQLSYA 355
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 450
+++VGNL+ + R E++E + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
I+VGNL T + +LF G+V+ I + +G V + D +I++LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 517 G 519
G
Sbjct: 342 G 342
Score = 29.1 bits (62), Expect = 0.58
Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 275
++++GNLS + +L+ + G V+ C+I+ + + + R AI+ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 276 NGELVHGQAIKIEAAKSPEGAVDANH*NIRG*FNGQDA 389
+ + G+ + I + ++ + NG+D+
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDS 164
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAIQNLN 278
+ +GNL+ TE+ L F +G ++ E + R+Y FV + + +EA++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 279 GELVHGQAIKIEAA 320
++ + I++ A
Sbjct: 68 YSILCDRCIRVSPA 81
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.7 bits (76), Expect = 0.012
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Frame = +1
Query: 358 IFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDATGDVNDAIK 507
+FV NL D ++ ELF KFG + C +I + YGFV + AI
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 508 ELNGI 522
LNG+
Sbjct: 481 TLNGV 485
Score = 33.5 bits (73), Expect = 0.027
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------------YGFVHMENEQVGRE 260
I++GNL +DL LFE +G + ++ + F+ EN+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 261 AIQNLNGELVHGQAIKIE 314
AI +LNG G +K+E
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
Score = 32.7 bits (71), Expect = 0.047
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Frame = +3
Query: 120 IFIGNLSDKTT--EADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQ 269
+F+ NL D L LF K+G + C +I + YGFV + +AI
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 270 NLNGELVHGQAIKIEAAKSPE 332
LNG L + + + A+ E
Sbjct: 481 TLNGVLFGKKRLFVNYAEKRE 501
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFG 426
I+VGNL ++ ++ ELF+ FG
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.3 bits (75), Expect = 0.015
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNG 281
+FI NLS K T ++ LF +YG V + + R FV EN Q R A + L+G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 34.3 bits (75), Expect = 0.015
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIK 507
+F+GNL E+ E F KFG + I+ +N FVH ++ DAIK
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHF---LNIRDAIK 349
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLN 278
+FIGNL E ++ F K+G + I+ +N FVH N + + ++ L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAIQNL 275
++ ++SD T +L + +YG + ++N GFV N +A+ L
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.5 bits (73), Expect = 0.027
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+F+ LS T E+D+ F +YG + +VRN Y FV E E+ + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 276 NGELVHGQAIKIEAAK 323
G +++G+ I ++ +
Sbjct: 162 AGLMLNGRRIVVDVER 177
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.1 bits (72), Expect = 0.036
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 266
T +F+G LS + L FE+YGT+V ++ + YG+V E + + A+
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 267 QNLNGELVHGQAIKIE 314
+ + G+ + ++
Sbjct: 322 AANGTKEIDGRMVNLD 337
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--------VRNYGFVHMENEQVGREAIQNL 275
+F+GNLS TE DL F G + + ++ +G+V + ++ ++ +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426
Query: 276 NGELVHGQAIKIE 314
NG + G+ +++
Sbjct: 427 NGHFIAGRPCRLD 439
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 32.7 bits (71), Expect = 0.047
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+F+ NL+ +T + DL F G + +V N YGFV + + A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 276 NGELVHGQAIKIEAA 320
+ +HG+ ++++ A
Sbjct: 67 KNKKLHGRILRLDFA 81
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FV NL +T+ ++ F G + +V N YGFV D A KEL
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.047
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 474
+F+G +T R P +R +F++FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVGREA 263
+F+G ++ E LR +FE++G+V + NY GF+ M +A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 32.7 bits (71), Expect = 0.047
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGE 284
T +++GNL + + F YGTV ++ ++ F++ ++ + + ++ LNG+
Sbjct: 586 THALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGK 645
Query: 285 LVH--GQAIKIEAAKSPEGAVDANH*NIRG 368
+ + I AK + +++H + G
Sbjct: 646 RIFFGSDPVCISFAKVASSSSESSHSAVDG 675
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 519
++VGNL A V F +GTV ++ ++ F++ D+ ++ELNG
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNG 644
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.062
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 99 PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGRE 260
P + IF+G L T L LF KYG V++C I+ + F+ +++Q
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 261 AI 266
A+
Sbjct: 420 AV 421
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNL 275
++ + N+ T+ D++ +FE +G + + R+ +G++ N R A++ +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 276 NGELVHGQAIKI 311
NG + G+ +++
Sbjct: 401 NGFDLAGRNMRV 412
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+F+ L+++ T +L FE+ G V + IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
+FV L ++ + E+ + F++ G V + IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 30.3 bits (65), Expect = 0.25
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRP----LFEKYGTVVE-----CDIVRNYGFVHMENEQVGREAIQN 272
+++ NL+DK + DLR LF YGTVV+ +R V + A++
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKA 65
Query: 273 LNGELVHGQAIKIEAAKSPEGAVD 344
L + G+ +KI+ A S ++
Sbjct: 66 LKNFIFFGKEMKIQYAHSKSKIIE 89
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 364 VGNLTDKTRAPEVRELFQKFGTV 432
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FV L T+ ++ +F +FG ++ C ++R+ Y F+ D V A ++
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 514 NGI 522
+
Sbjct: 306 QNV 308
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 29.1 bits (62), Expect = 0.58
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKY----GTVVEC--DIVRNYGFVHMENEQVGREAIQNL 275
+ +FI N+ + +E D++ LF++Y V+ C + F+ + NE + A +
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEM 132
Query: 276 NGELVHGQAIKIEAAKS 326
G ++I + + KS
Sbjct: 133 QGAFCLKRSILVHSVKS 149
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTV 194
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Frame = +3
Query: 63 LFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYGF 227
+F +N + + + + + N+S TT L+ KY +++ +I G
Sbjct: 118 MFIQQNNILNMLVNLMKYFVHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLKKGI 177
Query: 228 VHMENEQVGREAIQNLNGELVHGQAIKIEAAKSPEGAVDANH 353
++ +A+Q L+ + G+ I P+ +A H
Sbjct: 178 AIFQDLSDAEQAVQYLSNCKIDGRLISATITNHPKRLPNAEH 219
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
+F+GN+ +E + +F + G V +V + YGF + + A++ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 276 NGELVHGQAIKIE 314
N + + I++E
Sbjct: 69 NNSELGPRKIRVE 81
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
++F+ N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
++FV N++ + ++R F+ FG V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 627 PRATAGKTARGRPCPAAAGHDS-STTXTLMGCPSTINTVQLFDSVVHIARRVQMH 466
P + A TA RP AAG+ S S L+ C T+ ++ + + RV MH
Sbjct: 553 PLSGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIRELTERV-MH 606
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTV 194
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 558 TTXTLMGCPSTINTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLAD 400
T + C S TV L+DS R+ HE V L + P LL AD
Sbjct: 295 TALPICACASVDGTVALYDSASLKFRKSLPHEQAVIDCKFLPNTPYLLTACAD 347
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 97 CRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKSAAKP 264
CR+ VL T I ILD SK +V +A+S +T+ C K S P
Sbjct: 236 CRSCVLIVGQRSTNSILLVYQILDGLSKKSVDYTDAVSLRMTLICLQKLEPSEHDP 291
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Frame = +3
Query: 120 IFIGNLSDK--TTEADLRPLFEKYGTVVE----C----DIVRNYGFVHMENEQVGREAIQ 269
+++ NL D T ++ L LF +G+++ C I + YGFV + A
Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443
Query: 270 NLNGELV 290
LNG +V
Sbjct: 444 TLNGMMV 450
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 457 YGFVHLDATGDVNDAIKELNGIDGRRTAHEGXSC 558
Y F+H G V IKE+ I+G +G C
Sbjct: 374 YSFLHTARCGSVQRTIKEIIHIEGNWKLWKGLGC 407
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 575 PDTTRRQLXPSWAVRR--PSIPFNSLIASFTSPVASKCTKP*LRTISHSTTVPNF*NSSR 402
P+ TR P V+R S P + L +S + AS P + + S T+P++ N +
Sbjct: 122 PNMTRAASQPPPQVQRLPASAPKHDLYSSANASSAS--LHPTEQRTTSSPTIPSYANRTH 179
Query: 401 TSGARVLSVKLP 366
T LS +LP
Sbjct: 180 TDSPTSLSHRLP 191
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
+++GN+ + E + +F++ G V +V + YGF + A++NL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 276 N 278
N
Sbjct: 67 N 67
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 450
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 451 RNYGFVHLDATGDVNDAIKELNGIDGRRTA 540
RNY +L+ DVND K+ G +TA
Sbjct: 500 RNYSLQYLNGRPDVNDYFKDFLHATGTQTA 529
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 435 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 340
D + K+ AD A+L +THE GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 88 NLKCR-APVLSKSSSGTFLIKPQKPILD 168
+L+C+ +PV+ +S +F K + PILD
Sbjct: 211 HLRCKTSPVIEESKEISFSYKDEHPILD 238
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
I++GNL ++ +F +FG V+ ++VR+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,510
Number of Sequences: 5004
Number of extensions: 50308
Number of successful extensions: 242
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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