BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0642 (650 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 52 1e-07 SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 42 8e-05 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 42 1e-04 SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 41 1e-04 SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 40 2e-04 SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 3e-04 SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 39 5e-04 SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04 SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 7e-04 SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 38 0.001 SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 0.001 SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.004 SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.012 SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.015 SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 34 0.015 SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.027 SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.036 SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.047 SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.047 SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.047 SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.062 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.25 SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 30 0.25 SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.25 SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.58 SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 29 0.58 SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.77 SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 28 1.3 SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 1.3 SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 1.8 SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 1.8 SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 1.8 SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 27 1.8 SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 2.3 SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.1 SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 3.1 SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 27 3.1 SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.1 SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 4.1 SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 4.1 SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 5.4 SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 9.5 SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 9.5 >SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 51.6 bits (118), Expect = 1e-07 Identities = 18/69 (26%), Positives = 40/69 (57%) Frame = +3 Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296 ++F+G + + T D+ F+ YG +++C ++ +GFV +E+ + R+ + + G+ G Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64 Query: 297 QAIKIEAAK 323 I +E A+ Sbjct: 65 SRIVVEPAR 73 Score = 41.1 bits (92), Expect = 1e-04 Identities = 12/55 (21%), Positives = 31/55 (56%) Frame = +1 Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 519 ++FVG + + ++ + F+ +G +++C ++ +GFV ++ D D + + G Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQG 59 Score = 41.1 bits (92), Expect = 1e-04 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Frame = +3 Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY---GFVHMENEQVGREAIQNLNGE 284 F++ + NLS+ + DL+ + K G D R G V E+ R A+ +LNGE Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157 Query: 285 LVHGQAIKIEAAKSPEGA 338 ++ GQA+ + + P+ A Sbjct: 158 VIKGQAVTLR--EDPDAA 173 >SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 297 Score = 41.9 bits (94), Expect = 8e-05 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275 +F+ ++ + E +L+ +F K+GTV I+R +GF+ + AI NL Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 276 NGELVHGQAIKIEAAK 323 N + +G+ + ++ AK Sbjct: 163 NSQEFYGRVLNVQKAK 178 Score = 32.7 bits (71), Expect = 0.047 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 513 +FV + + + E++++F KFGTV I+ R +GF+ + AI L Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 514 N 516 N Sbjct: 163 N 163 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 41.5 bits (93), Expect = 1e-04 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Frame = +3 Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 266 GT +FI NL L F +G ++ C + + YGFVH ++ + AI Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225 Query: 267 QNLNGELVHGQAIKI 311 +++NG L++ + + + Sbjct: 226 EHVNGMLLNDKKVYV 240 Score = 38.3 bits (85), Expect = 0.001 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516 +F+ NL + + F FG ++ C + + YGFVH D+ N AI+ +N Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229 Query: 517 GI 522 G+ Sbjct: 230 GM 231 Score = 36.3 bits (80), Expect = 0.004 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275 +++G L TEA L LF G V + R+ Y +V+ N + G +A+ L Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141 Query: 276 NGELVHGQAIKI 311 N L+ G+ +I Sbjct: 142 NYTLIKGRPCRI 153 Score = 33.9 bits (74), Expect = 0.020 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 7/78 (8%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278 +FI NL D+ + L+ F +GT+ I+ + +GFV + +A+ +N Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425 Query: 279 GELVHGQAIKIEAAKSPE 332 ++ G+ + + A+ E Sbjct: 426 QRMLAGKPLYVALAQRKE 443 Score = 26.2 bits (55), Expect = 4.1 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516 +++ NL + E +LF +FG + +V R +GFV+ A+ ELN Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322 >SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 41.1 bits (92), Expect = 1e-04 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Frame = +3 Query: 66 FFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHME 239 F+ + P + T +F+G LS +E +L+ LF+ +G +V I + GFV Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346 Query: 240 NEQVGREAIQNLNGELVHGQAIKI 311 N Q AI L G + I++ Sbjct: 347 NRQSAEIAINQLQGYPLGNSRIRL 370 Score = 34.7 bits (76), Expect = 0.012 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%) Frame = +3 Query: 114 FKIFIGNLSDKTTEADLRPLFE---------KYGTVVECDIVRNYGFVHMENEQVGREAI 266 + IF+G+LS E D+ LF K T + ++ R YGFV +E + A+ Sbjct: 186 YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSAL 245 Query: 267 QNLNGELVHGQAIKIEAA 320 + G++ + I++ A Sbjct: 246 AEMQGQICGDRPIRVGLA 263 Score = 30.7 bits (66), Expect = 0.19 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 519 +FVG L+ E++ LFQ FG +V I + GFV AI +L G Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQG 360 Score = 27.5 bits (58), Expect = 1.8 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 10/74 (13%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQ---------KFGTVVECDIVRNYGFVHLDATGDVNDAIKE 510 IFVG+L+ +V LF K T + ++ R YGFV D A+ E Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247 Query: 511 LNG-IDGRRTAHEG 549 + G I G R G Sbjct: 248 MQGQICGDRPIRVG 261 >SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 738 Score = 40.3 bits (90), Expect = 2e-04 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = +3 Query: 117 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVH 293 ++F+G+L+ K+ ++ +L +F+ YG + + + NYGFV + A+ G V Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423 Query: 294 GQAIKIEAAK 323 GQ + +E +K Sbjct: 424 GQKLHLEISK 433 Score = 27.1 bits (57), Expect = 2.3 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +1 Query: 355 KIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 519 ++F+G+L K+ + + ++F+ +G + + + NYGFV D A+ G Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQG 419 >SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 348 Score = 39.9 bits (89), Expect = 3e-04 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 12/82 (14%) Frame = +3 Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDI----VR--------NYGFVHMENEQVGR 257 F++F+G LS T ++++R LFE GTV + I VR FV N++ Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVD 103 Query: 258 EAIQNLNGELVHGQAIKIEAAK 323 +AI+ LNG+ + + I ++ A+ Sbjct: 104 KAIETLNGKTLDDREIVVQKAR 125 Score = 33.1 bits (72), Expect = 0.036 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 12/67 (17%) Frame = +1 Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDI----VR--------NYGFVHLDATGDVND 498 ++FVG L+ T+ E+R LF+ GTV + I VR FV + DV+ Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104 Query: 499 AIKELNG 519 AI+ LNG Sbjct: 105 AIETLNG 111 Score = 25.8 bits (54), Expect = 5.4 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +3 Query: 213 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAA 320 R +GFV N + AI+ +NG+ V + +++A Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293 >SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 39.1 bits (87), Expect = 5e-04 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 11/69 (15%) Frame = +3 Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI-- 266 K+FIG L+ +TT+ LR FE++G V++C ++R+ +GF+ +N + E + Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223 Query: 267 -QNLNGELV 290 +L+G+++ Sbjct: 224 EHHLDGKII 232 Score = 36.7 bits (81), Expect = 0.003 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 8/67 (11%) Frame = +1 Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510 K+F+G L +T +R+ F++FG V++C ++R+ +GF+ VN+ + + Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223 Query: 511 LNGIDGR 531 + +DG+ Sbjct: 224 EHHLDGK 230 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = +1 Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 450 K+FVG + E R F +FG V++ ++ Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279 >SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 38.7 bits (86), Expect = 7e-04 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%) Frame = +3 Query: 75 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGF 227 H+N S+ P F IF+G+L T ++DL F Y + I+ R YGF Sbjct: 172 HNNFVSRDP---EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGF 228 Query: 228 VHMENEQVGREAIQNLNGELVHGQAIKIEAAKSPE 332 V +E+ + A+ ++ G L G+ ++I A SP+ Sbjct: 229 VRFSSEKEQQHALMHMQGYLCQGRPLRISVA-SPK 262 >SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 219 Score = 38.7 bits (86), Expect = 7e-04 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%) Frame = +3 Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQN 272 F++F+GNL + + L F +Y ++V+ +VR+ +GFV ++ +A + Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89 Query: 273 LNGELVHGQAIKIEAAKS 326 NG+ + + +K+ A S Sbjct: 90 KNGKYIGSRPVKLSRATS 107 Score = 26.6 bits (56), Expect = 3.1 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Frame = +1 Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 513 ++FVGNL + + + F ++ ++V+ +VR+ +GFV + A +E Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90 Query: 514 NG 519 NG Sbjct: 91 NG 92 >SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 529 Score = 37.9 bits (84), Expect = 0.001 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNL 275 +F+GNL + TE ++R E +G + + IV RN FVH N +A+Q L Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261 Score = 33.5 bits (73), Expect = 0.027 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKEL 513 +F+GNL + E+RE + FG + + IV RN FVH A++EL Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261 Score = 29.9 bits (64), Expect = 0.33 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR--NYGFVHLDATGD-VN--DAIKELNGI 522 I++GN D ++E F++FG + + R N FV+ + +N D IK+ G Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRIKQKKGY 475 Query: 523 DGRRTAHEGXSC 558 + R ++ C Sbjct: 476 ENYRISYGKDRC 487 Score = 26.2 bits (55), Expect = 4.1 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Frame = +3 Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVHMENEQVGREAIQNL 275 G + I+IGN D T L+ FE++G + + R N FV+ + AI + Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 37.9 bits (84), Expect = 0.001 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278 I++GNL T++ +L LF G+V+ I + +G V ENE +I+ LN Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341 Query: 279 GELVHGQAIKIEAA 320 G G+ +++ A Sbjct: 342 GYRYGGRPLQLSYA 355 Score = 29.5 bits (63), Expect = 0.44 Identities = 11/32 (34%), Positives = 22/32 (68%) Frame = +1 Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 450 +++VGNL+ + R E++E + G V+ C+I+ Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98 Score = 29.5 bits (63), Expect = 0.44 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516 I+VGNL T + +LF G+V+ I + +G V + D +I++LN Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341 Query: 517 G 519 G Sbjct: 342 G 342 Score = 29.1 bits (62), Expect = 0.58 Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Frame = +3 Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 275 ++++GNLS + +L+ + G V+ C+I+ + + + R AI+ L Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126 Query: 276 NGELVHGQAIKIEAAKSPEGAVDANH*NIRG*FNGQDA 389 + + G+ + I + ++ + NG+D+ Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDS 164 >SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 116 Score = 36.3 bits (80), Expect = 0.004 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAIQNLN 278 + +GNL+ TE+ L F +G ++ E + R+Y FV + + +EA++N+N Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67 Query: 279 GELVHGQAIKIEAA 320 ++ + I++ A Sbjct: 68 YSILCDRCIRVSPA 81 >SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 34.7 bits (76), Expect = 0.012 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%) Frame = +1 Query: 358 IFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDATGDVNDAIK 507 +FV NL D ++ ELF KFG + C +I + YGFV + AI Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480 Query: 508 ELNGI 522 LNG+ Sbjct: 481 TLNGV 485 Score = 33.5 bits (73), Expect = 0.027 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------------YGFVHMENEQVGRE 260 I++GNL +DL LFE +G + ++ + F+ EN+ Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81 Query: 261 AIQNLNGELVHGQAIKIE 314 AI +LNG G +K+E Sbjct: 82 AIASLNGSSFQGNTLKVE 99 Score = 32.7 bits (71), Expect = 0.047 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 10/81 (12%) Frame = +3 Query: 120 IFIGNLSDKTT--EADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQ 269 +F+ NL D L LF K+G + C +I + YGFV + +AI Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480 Query: 270 NLNGELVHGQAIKIEAAKSPE 332 LNG L + + + A+ E Sbjct: 481 TLNGVLFGKKRLFVNYAEKRE 501 Score = 26.6 bits (56), Expect = 3.1 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFG 426 I+VGNL ++ ++ ELF+ FG Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44 >SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 137 Score = 34.3 bits (75), Expect = 0.015 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNG 281 +FI NLS K T ++ LF +YG V + + R FV EN Q R A + L+G Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72 >SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 3|||Manual Length = 654 Score = 34.3 bits (75), Expect = 0.015 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIK 507 +F+GNL E+ E F KFG + I+ +N FVH ++ DAIK Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHF---LNIRDAIK 349 Score = 31.5 bits (68), Expect = 0.11 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLN 278 +FIGNL E ++ F K+G + I+ +N FVH N + + ++ L+ Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355 Score = 25.8 bits (54), Expect = 5.4 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAIQNL 275 ++ ++SD T +L + +YG + ++N GFV N +A+ L Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555 >SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Schizosaccharomyces pombe|chr 1|||Manual Length = 261 Score = 33.5 bits (73), Expect = 0.027 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275 +F+ LS T E+D+ F +YG + +VRN Y FV E E+ + A + Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161 Query: 276 NGELVHGQAIKIEAAK 323 G +++G+ I ++ + Sbjct: 162 AGLMLNGRRIVVDVER 177 >SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 33.1 bits (72), Expect = 0.036 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +3 Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 266 T +F+G LS + L FE+YGT+V ++ + YG+V E + + A+ Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321 Query: 267 QNLNGELVHGQAIKIE 314 + + G+ + ++ Sbjct: 322 AANGTKEIDGRMVNLD 337 Score = 28.3 bits (60), Expect = 1.0 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--------VRNYGFVHMENEQVGREAIQNL 275 +F+GNLS TE DL F G + + ++ +G+V + ++ ++ + Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426 Query: 276 NGELVHGQAIKIE 314 NG + G+ +++ Sbjct: 427 NGHFIAGRPCRLD 439 >SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 32.7 bits (71), Expect = 0.047 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275 +F+ NL+ +T + DL F G + +V N YGFV + + A + L Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66 Query: 276 NGELVHGQAIKIEAA 320 + +HG+ ++++ A Sbjct: 67 KNKKLHGRILRLDFA 81 Score = 27.1 bits (57), Expect = 2.3 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513 +FV NL +T+ ++ F G + +V N YGFV D A KEL Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66 >SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 32.7 bits (71), Expect = 0.047 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 474 +F+G +T R P +R +F++FG+V + NY GF+ + Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448 Score = 30.7 bits (66), Expect = 0.19 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVGREA 263 +F+G ++ E LR +FE++G+V + NY GF+ M +A Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457 >SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1060 Score = 32.7 bits (71), Expect = 0.047 Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Frame = +3 Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGE 284 T +++GNL + + F YGTV ++ ++ F++ ++ + + ++ LNG+ Sbjct: 586 THALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGK 645 Query: 285 LVH--GQAIKIEAAKSPEGAVDANH*NIRG 368 + + I AK + +++H + G Sbjct: 646 RIFFGSDPVCISFAKVASSSSESSHSAVDG 675 Score = 30.3 bits (65), Expect = 0.25 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 519 ++VGNL A V F +GTV ++ ++ F++ D+ ++ELNG Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNG 644 >SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 32.3 bits (70), Expect = 0.062 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Frame = +3 Query: 99 PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGRE 260 P + IF+G L T L LF KYG V++C I+ + F+ +++Q Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419 Query: 261 AI 266 A+ Sbjct: 420 AV 421 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 30.3 bits (65), Expect = 0.25 Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Frame = +3 Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNL 275 ++ + N+ T+ D++ +FE +G + + R+ +G++ N R A++ + Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400 Query: 276 NGELVHGQAIKI 311 NG + G+ +++ Sbjct: 401 NGFDLAGRNMRV 412 Score = 27.5 bits (58), Expect = 1.8 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218 +F+ L+++ T +L FE+ G V + IVR+ Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456 +FV L ++ + E+ + F++ G V + IVR+ Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274 >SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 111 Score = 30.3 bits (65), Expect = 0.25 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 9/84 (10%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRP----LFEKYGTVVE-----CDIVRNYGFVHMENEQVGREAIQN 272 +++ NL+DK + DLR LF YGTVV+ +R V + A++ Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKA 65 Query: 273 LNGELVHGQAIKIEAAKSPEGAVD 344 L + G+ +KI+ A S ++ Sbjct: 66 LKNFIFFGKEMKIQYAHSKSKIIE 89 >SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizosaccharomyces pombe|chr 2|||Manual Length = 282 Score = 30.3 bits (65), Expect = 0.25 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = +1 Query: 364 VGNLTDKTRAPEVRELFQKFGTV 432 V NL+D TR E+R+LF++FG + Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228 >SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating transcription Rct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 29.1 bits (62), Expect = 0.58 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 8/63 (12%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513 +FV L T+ ++ +F +FG ++ C ++R+ Y F+ D V A ++ Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305 Query: 514 NGI 522 + Sbjct: 306 QNV 308 >SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosaccharomyces pombe|chr 2|||Manual Length = 352 Score = 29.1 bits (62), Expect = 0.58 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Frame = +3 Query: 114 FKIFIGNLSDKTTEADLRPLFEKY----GTVVEC--DIVRNYGFVHMENEQVGREAIQNL 275 + +FI N+ + +E D++ LF++Y V+ C + F+ + NE + A + Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEM 132 Query: 276 NGELVHGQAIKIEAAKS 326 G ++I + + KS Sbjct: 133 QGAFCLKRSILVHSVKS 149 >SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces pombe|chr 1|||Manual Length = 369 Score = 28.7 bits (61), Expect = 0.77 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTV 194 +F+GNL +TT+ADL+ F + G + Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254 >SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 493 Score = 27.9 bits (59), Expect = 1.3 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Frame = +3 Query: 63 LFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYGF 227 +F +N + + + + + N+S TT L+ KY +++ +I G Sbjct: 118 MFIQQNNILNMLVNLMKYFVHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLKKGI 177 Query: 228 VHMENEQVGREAIQNLNGELVHGQAIKIEAAKSPEGAVDANH 353 ++ +A+Q L+ + G+ I P+ +A H Sbjct: 178 AIFQDLSDAEQAVQYLSNCKIDGRLISATITNHPKRLPNAEH 219 >SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity factor complex subunit Ctf1|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 27.9 bits (59), Expect = 1.3 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275 +F+GN+ +E + +F + G V +V + YGF + + A++ L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 276 NGELVHGQAIKIE 314 N + + I++E Sbjct: 69 NNSELGPRKIRVE 81 >SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizosaccharomyces pombe|chr 3|||Manual Length = 920 Score = 27.5 bits (58), Expect = 1.8 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +3 Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218 ++F+ N+S T LR F+ +G V + D+ N Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128 Score = 25.8 bits (54), Expect = 5.4 Identities = 10/34 (29%), Positives = 20/34 (58%) Frame = +1 Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456 ++FV N++ + ++R F+ FG V + D+ N Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128 >SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1063 Score = 27.5 bits (58), Expect = 1.8 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -3 Query: 627 PRATAGKTARGRPCPAAAGHDS-STTXTLMGCPSTINTVQLFDSVVHIARRVQMH 466 P + A TA RP AAG+ S S L+ C T+ ++ + + RV MH Sbjct: 553 PLSGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIRELTERV-MH 606 >SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 182 Score = 27.5 bits (58), Expect = 1.8 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTV 194 +++GNLS TTE + LF K G + Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58 >SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharomyces pombe|chr 1|||Manual Length = 399 Score = 27.5 bits (58), Expect = 1.8 Identities = 18/53 (33%), Positives = 22/53 (41%) Frame = -3 Query: 558 TTXTLMGCPSTINTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLAD 400 T + C S TV L+DS R+ HE V L + P LL AD Sbjct: 295 TALPICACASVDGTVALYDSASLKFRKSLPHEQAVIDCKFLPNTPYLLTACAD 347 >SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces pombe|chr 1|||Manual Length = 1163 Score = 27.1 bits (57), Expect = 2.3 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = +1 Query: 97 CRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKSAAKP 264 CR+ VL T I ILD SK +V +A+S +T+ C K S P Sbjct: 236 CRSCVLIVGQRSTNSILLVYQILDGLSKKSVDYTDAVSLRMTLICLQKLEPSEHDP 291 >SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 710 Score = 26.6 bits (56), Expect = 3.1 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Frame = +3 Query: 120 IFIGNLSDK--TTEADLRPLFEKYGTVVE----C----DIVRNYGFVHMENEQVGREAIQ 269 +++ NL D T ++ L LF +G+++ C I + YGFV + A Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443 Query: 270 NLNGELV 290 LNG +V Sbjct: 444 TLNGMMV 450 >SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 752 Score = 26.6 bits (56), Expect = 3.1 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +1 Query: 457 YGFVHLDATGDVNDAIKELNGIDGRRTAHEGXSC 558 Y F+H G V IKE+ I+G +G C Sbjct: 374 YSFLHTARCGSVQRTIKEIIHIEGNWKLWKGLGC 407 >SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 659 Score = 26.6 bits (56), Expect = 3.1 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Frame = -1 Query: 575 PDTTRRQLXPSWAVRR--PSIPFNSLIASFTSPVASKCTKP*LRTISHSTTVPNF*NSSR 402 P+ TR P V+R S P + L +S + AS P + + S T+P++ N + Sbjct: 122 PNMTRAASQPPPQVQRLPASAPKHDLYSSANASSAS--LHPTEQRTTSSPTIPSYANRTH 179 Query: 401 TSGARVLSVKLP 366 T LS +LP Sbjct: 180 TDSPTSLSHRLP 191 >SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 422 Score = 26.2 bits (55), Expect = 4.1 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Frame = +3 Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275 +++GN+ + E + +F++ G V +V + YGF + A++NL Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66 Query: 276 N 278 N Sbjct: 67 N 67 >SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces pombe|chr 2|||Manual Length = 478 Score = 26.2 bits (55), Expect = 4.1 Identities = 9/32 (28%), Positives = 19/32 (59%) Frame = +1 Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 450 +I+VG L+ + ++ F +FG+V +I+ Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37 >SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 564 Score = 26.2 bits (55), Expect = 4.1 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 451 RNYGFVHLDATGDVNDAIKELNGIDGRRTA 540 RNY +L+ DVND K+ G +TA Sbjct: 500 RNYSLQYLNGRPDVNDYFKDFLHATGTQTA 529 >SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 581 Score = 25.8 bits (54), Expect = 5.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 Query: 435 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 340 D + K+ AD A+L +THE GWRR Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503 >SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 25.0 bits (52), Expect = 9.5 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +1 Query: 88 NLKCR-APVLSKSSSGTFLIKPQKPILD 168 +L+C+ +PV+ +S +F K + PILD Sbjct: 211 HLRCKTSPVIEESKEISFSYKDEHPILD 238 >SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces pombe|chr 2|||Manual Length = 217 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = +1 Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456 I++GNL ++ +F +FG V+ ++VR+ Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,581,510 Number of Sequences: 5004 Number of extensions: 50308 Number of successful extensions: 242 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 239 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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