Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0642
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 60 2e-09
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 60 2e-09
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 56 3e-08
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 52 4e-07
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 52 4e-07
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 49 3e-06
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 49 3e-06
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 47 1e-05
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 47 1e-05
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 47 1e-05
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 46 2e-05
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 45 4e-05
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 45 5e-05
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 45 5e-05
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 45 5e-05
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 45 5e-05
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 45 5e-05
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 44 9e-05
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 44 9e-05
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 42 3e-04
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 42 3e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 41 7e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 41 9e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 41 9e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 41 9e-04
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 40 0.002
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 40 0.002
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 40 0.002
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 40 0.002
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 39 0.004
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 39 0.004
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 38 0.008
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 37 0.011
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 37 0.011
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 37 0.011
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 37 0.011
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.019
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 36 0.019
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 36 0.025
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.033
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.033
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 36 0.033
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 36 0.033
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 35 0.044
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 35 0.044
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 35 0.044
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 35 0.044
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 35 0.058
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 34 0.076
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 33 0.13
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 33 0.13
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 33 0.13
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 33 0.13
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.18
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.18
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 33 0.18
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 33 0.18
U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical pr... 33 0.23
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.23
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 32 0.31
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 32 0.31
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 32 0.31
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 32 0.41
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 30 1.2
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 30 1.6
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 30 1.6
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 30 1.6
AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.6
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 30 1.6
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 30 1.6
AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical ... 29 2.9
AF016422-6|AAY86271.1| 128|Caenorhabditis elegans Hypothetical ... 28 6.6
U64856-1|AAB04985.2| 429|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/70 (38%), Positives = 41/70 (58%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
K+F+GNL D L+ +F+ + V ECDIV+NY FVH+E + V I L G + G
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVD-PIITRLTGYTIDG 62
Query: 297 QAIKIEAAKS 326
+ + I+ + S
Sbjct: 63 KVVNIKKSTS 72
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG--IDG 528
K+FVGNL D + +++++FQ F V ECDIV+NY FVH++ DV+ I L G IDG
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIE-EDDVDPIITRLTGYTIDG 62
Query: 529 R 531
+
Sbjct: 63 K 63
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/70 (38%), Positives = 41/70 (58%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
K+F+GNL D L+ +F+ + V ECDIV+NY FVH+E + V I L G + G
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIEEDDVD-PIITRLTGYTIDG 62
Query: 297 QAIKIEAAKS 326
+ + I+ + S
Sbjct: 63 KVVNIKKSTS 72
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG--IDG 528
K+FVGNL D + +++++FQ F V ECDIV+NY FVH++ DV+ I L G IDG
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIE-EDDVDPIITRLTGYTIDG 62
Query: 529 R 531
+
Sbjct: 63 K 63
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVHMENEQVGREAIQNLNGELVH 293
+++GN+S +TT+ADLR LF YG + E I + Y FV E ++ +AI +NG+ +
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMA 298
Query: 294 GQAIK 308
G ++
Sbjct: 299 GNQVR 303
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 269
F +F+G+LS + L+ F K+G V E ++R+ YGFV N+Q AI
Sbjct: 135 FHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIA 194
Query: 270 NLNGELVHGQAIK 308
+NG+ + +A++
Sbjct: 195 GMNGKWIGKRAVR 207
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLDATGDVNDAIKELNG 519
++VGN++ +T ++R+LF +G + E I + Y FV + AI E+NG
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNG 294
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FVG+L+ ++ F KFG V E ++R+ YGFV + +AI +
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 514 NG-IDGRRTAHEGXSCRR 564
NG G+R + R+
Sbjct: 197 NGKWIGKRAVRTNWAARK 214
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/73 (26%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFVHMENEQVGREAIQNLNG 281
TG ++F+GNL ++ E +L+ LF +G + EC + + + F+ ++ A + ++G
Sbjct: 113 TGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDG 172
Query: 282 ELVHGQAIKIEAA 320
++HG+ +++ A
Sbjct: 173 RIIHGRQVRVRFA 185
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFVHLDATGDVNDAIKELNG--ID 525
++FVGNL ++ + E++ELF G + EC + + + F+ LD A + ++G I
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDGRIIH 176
Query: 526 GRR 534
GR+
Sbjct: 177 GRQ 179
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/73 (26%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFVHMENEQVGREAIQNLNG 281
TG ++F+GNL ++ E +L+ LF +G + EC + + + F+ ++ A + ++G
Sbjct: 113 TGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDG 172
Query: 282 ELVHGQAIKIEAA 320
++HG+ +++ A
Sbjct: 173 RIIHGRQVRVRFA 185
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFVHLDATGDVNDAIKELNG--ID 525
++FVGNL ++ + E++ELF G + EC + + + F+ LD A + ++G I
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDGRIIH 176
Query: 526 GRR 534
GR+
Sbjct: 177 GRQ 179
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/76 (26%), Positives = 44/76 (57%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
+I+IG L+ + +E D+ F YG + + + +GFV ++++ +A+ +LNG+ + G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 297 QAIKIEAAKSPEGAVD 344
+ + ++ +K G D
Sbjct: 64 ERVILDYSKPRGGGGD 79
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG--IDG 528
+I++G LT + ++ F+ +G + + + +GFV D D DA+ +LNG + G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 529 RRTAHE------GXSCRRVVSGSGRAWATPSSLXRCGPRG 630
R + G R G GR A SS G G
Sbjct: 64 ERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGG 103
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/76 (26%), Positives = 44/76 (57%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
+I+IG L+ + +E D+ F YG + + + +GFV ++++ +A+ +LNG+ + G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 297 QAIKIEAAKSPEGAVD 344
+ + ++ +K G D
Sbjct: 64 ERVILDYSKPRGGGGD 79
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG--IDG 528
+I++G LT + ++ F+ +G + + + +GFV D D DA+ +LNG + G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 529 RRTAHE------GXSCRRVVSGSGRAWATPSSLXRCGPRG 630
R + G R G GR A SS G G
Sbjct: 64 ERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGG 103
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/76 (26%), Positives = 44/76 (57%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
+I+IG L+ + +E D+ F YG + + + +GFV ++++ +A+ +LNG+ + G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 297 QAIKIEAAKSPEGAVD 344
+ + ++ +K G D
Sbjct: 64 ERVILDYSKPRGGGGD 79
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG--IDG 528
+I++G LT + ++ F+ +G + + + +GFV D D DA+ +LNG + G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 529 RRTAHE------GXSCRRVVSGSGRAWATPSSLXRCGPRG 630
R + G R G GR A SS G G
Sbjct: 64 ERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGG 103
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVHMENEQVGREAIQ 269
G ++ + N+ + + DL+ +FEK+G V + +I+ N +GFV ME Q A Q
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210
Query: 270 NLNGELVHGQAIKIEAA 320
L+G ++ G+ I++ A
Sbjct: 211 ELHGSMIEGRKIEVNCA 227
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN------YGFVHLDATGDVNDAIKELN 516
++ V N+ + R P+++ +F+KFG V + +I+ N +GFV ++ D A +EL+
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 517 G--IDGRR 534
G I+GR+
Sbjct: 214 GSMIEGRK 221
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVHMENEQVGREAIQ 269
G ++ + N+ + + DL+ +FEK+G V + +I+ N +GFV ME Q A Q
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210
Query: 270 NLNGELVHGQAIKIEAA 320
L+G ++ G+ I++ A
Sbjct: 211 ELHGSMIEGRKIEVNCA 227
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN------YGFVHLDATGDVNDAIKELN 516
++ V N+ + R P+++ +F+KFG V + +I+ N +GFV ++ D A +EL+
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 517 G--IDGRR 534
G I+GR+
Sbjct: 214 GSMIEGRK 221
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = +3
Query: 96 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVG 254
M +G IFI NL + F +G ++ C + + YGFVH E E+
Sbjct: 114 MRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAA 173
Query: 255 REAIQNLNGELVHGQAI 305
+ AIQ +NG L+ G+ +
Sbjct: 174 QNAIQKVNGMLLAGKKV 190
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQNLNG 281
+++ N D + L +F K+G + C+++ + +GFV N + A+Q L+
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 282 ELVHGQAIKIEAAKS 326
+ G +K+ ++
Sbjct: 275 STIEGTDLKLHVCRA 289
Score = 34.7 bits (76), Expect = 0.058
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
IF+ NL + + F FG ++ C + + YGFVH + +AI+++N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 517 GI 522
G+
Sbjct: 182 GM 183
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATGDVNDAIKELN 516
++V N D + ++F KFG + C+++ + +GFV + A++ L+
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALH 273
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = +3
Query: 96 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVG 254
M +G IFI NL + F +G ++ C + + YGFVH E E+
Sbjct: 51 MRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAA 110
Query: 255 REAIQNLNGELVHGQAI 305
+ AIQ +NG L+ G+ +
Sbjct: 111 QNAIQKVNGMLLAGKKV 127
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQNLNG 281
+++ N D + L LF K+G + C+++ + +GFV N + A+Q L+
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 211
Query: 282 ELVHGQAIKIEAAKS 326
+ G +K+ ++
Sbjct: 212 STIEGTDLKLHVCRA 226
Score = 34.7 bits (76), Expect = 0.058
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
IF+ NL + + F FG ++ C + + YGFVH + +AI+++N
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 517 GI 522
G+
Sbjct: 119 GM 120
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATGDVNDAIKELN 516
++V N D + +LF KFG + C+++ + +GFV + A++ L+
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALH 210
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = +3
Query: 96 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVG 254
M +G IFI NL + F +G ++ C + + YGFVH E E+
Sbjct: 114 MRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAA 173
Query: 255 REAIQNLNGELVHGQAI 305
+ AIQ +NG L+ G+ +
Sbjct: 174 QNAIQKVNGMLLAGKKV 190
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQNLNG 281
+++ N D + L LF K+G + C+++ + +GFV N + A+Q L+
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 282 ELVHGQAIKIEAAKS 326
+ G +K+ ++
Sbjct: 275 STIEGTDLKLHVCRA 289
Score = 34.7 bits (76), Expect = 0.058
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
IF+ NL + + F FG ++ C + + YGFVH + +AI+++N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 517 GI 522
G+
Sbjct: 182 GM 183
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATGDVNDAIKELN 516
++V N D + +LF KFG + C+++ + +GFV + A++ L+
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALH 273
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
+F+GN+S +E +R +F K G V+ +V + YGF+ + Q AI+NL
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 276 NGELVHGQAIKIEAA 320
NG + G+ +++++A
Sbjct: 80 NGYELSGRILRVDSA 94
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 513
+FVGN++ +R +F K G V+ +V + YGF+ AI+ L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 514 NGID 525
NG +
Sbjct: 80 NGYE 83
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/71 (26%), Positives = 38/71 (53%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQ 299
++I N+ + TE L LF++Y ++ V++Y F+H +A++ NG+ + G
Sbjct: 379 LYIRNIKEAVTEEKLNELFKEYASLDRVKKVKDYAFIHFNERDDCLKAMEEWNGKELEGT 438
Query: 300 AIKIEAAKSPE 332
++ AK P+
Sbjct: 439 VVEASLAKPPQ 449
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 519
+++ N+ + ++ ELF+++ ++ V++Y F+H + D A++E NG
Sbjct: 379 LYIRNIKEAVTEEKLNELFKEYASLDRVKKVKDYAFIHFNERDDCLKAMEEWNG 432
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
+I++G++ E L PLFEK G + + ++ R Y FV N++ A +
Sbjct: 201 EIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKT 260
Query: 273 LNG-ELVHGQAIKIEAA 320
+G E+ G+ +K+ +
Sbjct: 261 YDGHEISTGKPLKVNVS 277
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = +3
Query: 90 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENE 245
SK+ T F +F+G+LS + LR F+ +G V + ++R+ YGFV
Sbjct: 14 SKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKR 73
Query: 246 QVGREAIQNLNGELVHGQAIKIE-AAKSPEGAVDANH*N 359
+ AI+ +NG+ + + I+ A + P +H N
Sbjct: 74 EEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 112
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FVG+L+ + ++RE FQ FG V + ++R+ YGFV + AI+++
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 514 NG-IDGRRTAHEGXSCRR 564
NG GRRT + R+
Sbjct: 84 NGQWLGRRTIRTNWATRK 101
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLDATGDVNDAIKELNGID 525
++VGN+ T E+R+ F FG + E I ++ Y FV D AI ++N D
Sbjct: 130 VYVGNIASLTE-DEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 186
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = +3
Query: 90 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENE 245
SK+ T F +F+G+LS + LR F+ +G V + ++R+ YGFV
Sbjct: 24 SKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKR 83
Query: 246 QVGREAIQNLNGELVHGQAIKIE-AAKSPEGAVDANH*N 359
+ AI+ +NG+ + + I+ A + P +H N
Sbjct: 84 EEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 122
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FVG+L+ + ++RE FQ FG V + ++R+ YGFV + AI+++
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 514 NG-IDGRRTAHEGXSCRR 564
NG GRRT + R+
Sbjct: 94 NGQWLGRRTIRTNWATRK 111
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLDATGDVNDAIKELNGID 525
++VGN+ T E+R+ F FG + E I ++ Y FV D AI ++N D
Sbjct: 140 VYVGNIASLTE-DEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 196
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = +3
Query: 90 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENE 245
SK+ T F +F+G+LS + LR F+ +G V + ++R+ YGFV
Sbjct: 127 SKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKR 186
Query: 246 QVGREAIQNLNGELVHGQAIKIE-AAKSPEGAVDANH*N 359
+ AI+ +NG+ + + I+ A + P +H N
Sbjct: 187 EEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 225
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FVG+L+ + ++RE FQ FG V + ++R+ YGFV + AI+++
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 514 NG-IDGRRTAHEGXSCRR 564
NG GRRT + R+
Sbjct: 197 NGQWLGRRTIRTNWATRK 214
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLDATGDVNDAIKELNGID 525
++VGN+ T E+R+ F FG + E I ++ Y FV D AI ++N D
Sbjct: 243 VYVGNIASLTE-DEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 299
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = +3
Query: 90 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENE 245
SK+ T F +F+G+LS + LR F+ +G V + ++R+ YGFV
Sbjct: 95 SKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKR 154
Query: 246 QVGREAIQNLNGELVHGQAIKIE-AAKSPEGAVDANH*N 359
+ AI+ +NG+ + + I+ A + P +H N
Sbjct: 155 EEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 193
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FVG+L+ + ++RE FQ FG V + ++R+ YGFV + AI+++
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 514 NG-IDGRRTAHEGXSCRR 564
NG GRRT + R+
Sbjct: 165 NGQWLGRRTIRTNWATRK 182
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLDATGDVNDAIKELNGID 525
++VGN+ T E+R+ F FG + E I ++ Y FV D AI ++N D
Sbjct: 211 VYVGNIASLTE-DEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 267
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 45.2 bits (102), Expect = 4e-05
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREA 263
G + I NLS +TT DLR FE+YG + + I R+ +GFV + A
Sbjct: 17 GLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHA 76
Query: 264 IQNLNGELVHGQAIKIEAAKSPEGAVDANH*NIRG*FNGQDARARSPR 407
+ +G+LV G+ +++ AK + + RG G+ R+RSPR
Sbjct: 77 LDRTDGKLVDGRELRVTLAKYDRPSDERGG---RGGGGGR-RRSRSPR 120
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVHMENEQVGREAIQ 269
G ++ + N+ K E DL +FEK G VV+ +I+ N +GFV M+N A
Sbjct: 98 GPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARA 157
Query: 270 NLNGELVHGQAIKIEAA 320
NG + G+ +++ A
Sbjct: 158 EFNGTTIEGRRVEVNLA 174
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 81 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG LS K E +LR +F K+G + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G L+ K +RE+F KFG + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVEC----DIVRN----YGFVHMENEQVGREAIQNL 275
+FI +L ++DL F +G ++ D V N +GFV EN Q AI +
Sbjct: 501 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 560
Query: 276 NGELVHGQAIKIE 314
NG + + +K++
Sbjct: 561 NGFQIGSKRLKVQ 573
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 81 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG LS K E +LR +F K+G + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G L+ K +RE+F KFG + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVEC----DIVRN----YGFVHMENEQVGREAIQNL 275
+FI +L ++DL F +G ++ D V N +GFV EN Q AI +
Sbjct: 501 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 560
Query: 276 NGELVHGQAIKIE 314
NG + + +K++
Sbjct: 561 NGFQIGSKRLKVQ 573
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 81 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG LS K E +LR +F K+G + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G L+ K +RE+F KFG + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVEC----DIVRN----YGFVHMENEQVGREAIQNL 275
+FI +L ++DL F +G ++ D V N +GFV EN Q AI +
Sbjct: 430 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 489
Query: 276 NGELVHGQAIKIE 314
NG + + +K++
Sbjct: 490 NGFQIGSKRLKVQ 502
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 81 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG LS K E +LR +F K+G + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G L+ K +RE+F KFG + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 81 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG LS K E +LR +F K+G + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G L+ K +RE+F KFG + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 81 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG LS K E +LR +F K+G + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G L+ K +RE+F KFG + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 81 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG LS K E +LR +F K+G + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G L+ K +RE+F KFG + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVEC----DIVRN----YGFVHMENEQVGREAIQNL 275
+FI +L ++DL F +G ++ D V N +GFV EN Q AI +
Sbjct: 501 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 560
Query: 276 NGELVHGQAIKIE 314
NG + + +K++
Sbjct: 561 NGFQIGSKRLKVQ 573
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVHMENEQVGREAIQ 269
G ++ + N+ K E DL +FEK G VV+ +I+ N +GFV M+N A
Sbjct: 98 GPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARA 157
Query: 270 NLNGELVHGQAIKIEAA 320
NG + G+ +++ A
Sbjct: 158 EFNGTTIEGRRVEVNLA 174
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 44.8 bits (101), Expect = 5e-05
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FVG+L + + ++RE F KFG V E I+R+ YGFV D AI E+
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 514 NGI-DGRRTAHEGXSCRR 564
NG GRRT + R+
Sbjct: 194 NGAWLGRRTIRTNWATRK 211
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Frame = +3
Query: 90 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENE 245
SK + F +F+G+L + LR F K+G V E I+R+ YGFV
Sbjct: 124 SKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRR 183
Query: 246 QVGREAIQNLNGELVHGQAIKIE-AAKSPE 332
+ AI +NG + + I+ A + P+
Sbjct: 184 EDAERAIDEMNGAWLGRRTIRTNWATRKPD 213
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/73 (23%), Positives = 42/73 (57%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
+++IG L ++ ++ D+ F YG + + + +GFV ++++ +A+ +LNG+ + G
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62
Query: 297 QAIKIEAAKSPEG 335
+ + +E + G
Sbjct: 63 ERVILEFPRRKVG 75
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG 519
++++G L ++ +V F+ +G + + + +GFV D +DA+ +LNG
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNG 57
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREA 263
G + I NLS +TT DLR FE+YG + + I R+ +GFV + A
Sbjct: 17 GLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHA 76
Query: 264 IQNLNGELVHGQAIKIEAAK 323
+ +G+LV G+ +++ AK
Sbjct: 77 LDRTDGKLVDGRELRVTLAK 96
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG----FVHLDATGDVNDAIKELNG- 519
K++VGNL R EV ++F K+G + DI G FV + D DA++ +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 520 -IDGRR 534
DGRR
Sbjct: 70 EFDGRR 75
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG----FVHMENEQVGREAIQ 269
G+ K+++GNL E ++ +F KYG + DI G FV E+ + +A++
Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVR 64
Query: 270 NLNGELVHGQAIKIE 314
+G G+ I++E
Sbjct: 65 ARDGYEFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG----FVHLDATGDVNDAIKELNG- 519
K++VGNL R EV ++F K+G + DI G FV + D DA++ +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 520 -IDGRR 534
DGRR
Sbjct: 70 EFDGRR 75
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG----FVHMENEQVGREAIQ 269
G+ K+++GNL E ++ +F KYG + DI G FV E+ + +A++
Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVR 64
Query: 270 NLNGELVHGQAIKIE 314
+G G+ I++E
Sbjct: 65 ARDGYEFDGRRIRVE 79
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
F +++GN +TTE DL F + G V IV R + FV E + A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 270 NLNGELVHGQAIKIEAAKS 326
NG +G+A+++ A++
Sbjct: 64 QFNGVDFNGRALRVNLAQN 82
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQNLNG 281
+++ N D + L LF K+G + C+++ + +GFV N + A+Q L+
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 214
Query: 282 ELVHGQAIKIEAAKS 326
+ G +K+ ++
Sbjct: 215 STIEGTDLKLHVCRA 229
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATGDVNDAIKELN 516
++V N D + +LF KFG + C+++ + +GFV + A++ L+
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALH 213
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
F++++ ++ +E DL+ +FE +G +V+C + R +G++ N EAI
Sbjct: 207 FRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIA 266
Query: 270 NLNGELVHGQAIKIEAAKSPEGAV 341
+N + GQ +++ +P A+
Sbjct: 267 GMNMFDLGGQYLRVGKCVTPPDAL 290
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
F++++ ++ +E DL+ +FE +G +V+C + R +G++ N EAI
Sbjct: 207 FRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIA 266
Query: 270 NLNGELVHGQAIKIEAAKSPEGAV 341
+N + GQ +++ +P A+
Sbjct: 267 GMNMFDLGGQYLRVGKCVTPPDAL 290
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +3
Query: 81 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHME 239
+P ++ G G IFI NL + F +G ++ C + + YGFVH E
Sbjct: 136 DPAARRAGNGN--IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFE 193
Query: 240 NEQVGREAIQNLNGELVHGQAIKI 311
E + AI+ +NG L+ + + +
Sbjct: 194 TEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
IF+ NL V + F FG ++ C + + YGFVH + AI+++N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 517 GI 522
G+
Sbjct: 207 GM 208
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+F+ N + + L +F K+G + ++ + +GFV ++ +A++ LN
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 279 GELVHGQAIKIEAAKS 326
++ G K+ ++
Sbjct: 300 DSILEGTDCKLSVCRA 315
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +3
Query: 81 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHME 239
+P ++ G G IFI NL + F +G ++ C + + YGFVH E
Sbjct: 136 DPAARRAGNGN--IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFE 193
Query: 240 NEQVGREAIQNLNGELVHGQAIKI 311
E + AI+ +NG L+ + + +
Sbjct: 194 TEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
IF+ NL V + F FG ++ C + + YGFVH + AI+++N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 517 GI 522
G+
Sbjct: 207 GM 208
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+F+ N + + L +F K+G + ++ + +GFV ++ +A++ LN
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 279 GELVHGQAIKIEAAKS 326
++ G K+ ++
Sbjct: 300 DSILEGTDCKLSVCRA 315
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTV----VECD----IVRNYGFVHMENEQVGRE 260
+G F +++GN +TTE +L F G + + CD R + F+ E +
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQR 61
Query: 261 AIQNLNGELVHGQAIKIEAA 320
A++ +NG +G+ +++ A
Sbjct: 62 AVEQMNGAEFNGRPLRVNLA 81
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNG 519
K++VG L + E+ E+F +FG + + + R + FV D D DA++ L+G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNG 519
K++VG L + E+ E+F +FG + + + R + FV D D DA++ L+G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNG 519
K++VG L + E+ E+F +FG + + + R + FV D D DA++ L+G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREA 263
T + +F+ NLS T + L LF ++G +V I+R+ Y FV M N A
Sbjct: 371 TAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNA 430
Query: 264 IQNLNGELVHGQAIKI 311
+ +LNG + G+ +++
Sbjct: 431 MLSLNGTNLAGKTLQV 446
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 257
G + I L T+ ++R LF G + C +VR+ YGFV+ E+
Sbjct: 38 GESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDAL 97
Query: 258 EAIQNLNGELVHGQAIKIEAAKSPEGAVDANH*NIRG 368
A+ + NG + + IK+ A+ + ++ + G
Sbjct: 98 RAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSG 134
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 516
+FV NL+ T + +LF +FG +V I+R+ Y FV + + +A+ LN
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 517 G 519
G
Sbjct: 436 G 436
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 513
++V + E+ +F+ FG ++ I+ + GFV D + + AIK L
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 514 NG 519
NG
Sbjct: 190 NG 191
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
+++ + T +L +F +G ++ I+ + GFV + + AI+ L
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 276 NGELVHG--QAIKIEAAKSP 329
NG + G + I ++ A +P
Sbjct: 190 NGSIPSGCSEQITVKFANNP 209
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+F+ L+ TT+ DL +F ++G + C+IVR+ Y F+ +N + +A +
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 276 NGELVHGQAIKIEAAKS 326
+ L+ + I ++ ++S
Sbjct: 303 DNVLIDDRRIHVDFSQS 319
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FV L T ++ +F +FG + C+IVR+ Y F+ D A ++
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 514 NG--IDGRR 534
+ ID RR
Sbjct: 303 DNVLIDDRR 311
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+F+ L+ TT+ DL +F ++G + C+IVR+ Y F+ +N + +A +
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 276 NGELVHGQAIKIEAAKS 326
+ L+ + I ++ ++S
Sbjct: 303 DNVLIDDRRIHVDFSQS 319
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FV L T ++ +F +FG + C+IVR+ Y F+ D A ++
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 514 NG--IDGRR 534
+ ID RR
Sbjct: 303 DNVLIDDRR 311
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+F+ L+ TT+ DL +F ++G + C+IVR+ Y F+ +N + +A +
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 233
Query: 276 NGELVHGQAIKIEAAKS 326
+ L+ + I ++ ++S
Sbjct: 234 DNVLIDDRRIHVDFSQS 250
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FV L T ++ +F +FG + C+IVR+ Y F+ D A ++
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 233
Query: 514 NG--IDGRR 534
+ ID RR
Sbjct: 234 DNVLIDDRR 242
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGRE 260
T T K+FIG LS +T D++ FE YG V + ++ R +GFV ++++V +
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVA-D 189
Query: 261 AIQNLNGELVHGQAIKIEAAKSPE 332
+ ++ ++G+ ++ + A+ E
Sbjct: 190 KVCEIHFHEINGKMVECKKAQPKE 213
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G L+ +T A +R+ F +FG V EC ++R+
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGRE 260
T T K+FIG LS +T D++ FE YG V + ++ R +GFV ++++V +
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVA-D 189
Query: 261 AIQNLNGELVHGQAIKIEAAKSPE 332
+ ++ ++G+ ++ + A+ E
Sbjct: 190 KVCEIHFHEINGKMVECKKAQPKE 213
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G L+ +T A +R+ F +FG V EC ++R+
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +3
Query: 132 NLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLNGEL 287
NLS TTE DLR +F ++G + +CD+V R +GF++ + A L
Sbjct: 82 NLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCNTD 141
Query: 288 VHGQAIKIEAAKSPEG 335
+ G I+++ + + G
Sbjct: 142 LDGHKIRVDFSLTKRG 157
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +1
Query: 364 VGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNG 519
V NL+ T ++R++F +FG + +CD+V R +GF++ + D A +L
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCN 139
Query: 520 ID 525
D
Sbjct: 140 TD 141
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 37.1 bits (82), Expect = 0.011
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 513
+IFVG T E+RE F+KF V + +V++ YGF+ + T D + I++L
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFE-TEDQAEEIRKL 125
Query: 514 --NGIDGR-RTAHEGXSCRRVVSGS---GRAWATPSSLXRCGPRGP 633
++ R R + G + R++ S S A ATPS L P GP
Sbjct: 126 TPKQLEFRSRKLNLGPAIRKINSNSFQPSYAIATPSQLVAASP-GP 170
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGRE 260
+IF+G TTE +LR FEK+ V + +V++ YGF+ E E E
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 121
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC 203
TG ++F+GNL ++ E +L+ LF +G + EC
Sbjct: 113 TGRCRLFVGNLPNEVKETELKELFSPHGDIAEC 145
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFVHL 474
++FVGNL ++ + E++ELF G + EC + + + F+ L
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRL 157
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
F++++ ++ +E DL+ +FE +G +V+C + R +G++ N EAI
Sbjct: 207 FRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIA 266
Query: 270 NLNGELVHGQAIK 308
+N + GQ ++
Sbjct: 267 GMNMFDLGGQYLR 279
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 37.1 bits (82), Expect = 0.011
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 513
+IFVG T E+RE F+KF V + +V++ YGF+ + T D + I++L
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFE-TEDQAEEIRKL 126
Query: 514 --NGIDGR-RTAHEGXSCRRVVSGS---GRAWATPSSLXRCGPRGP 633
++ R R + G + R++ S S A ATPS L P GP
Sbjct: 127 TPKQLEFRSRKLNLGPAIRKINSNSFQPSYAIATPSQLVAASP-GP 171
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGRE 260
+IF+G TTE +LR FEK+ V + +V++ YGF+ E E E
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
I+IG LS +E D+ +F +YG V+ +++R+ + F+ ++++ A+ N
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 276 NGELVHGQAIK---IEAAKSPEGAVDAN 350
NG +H + I+ +E K P+ DA+
Sbjct: 100 NGISLHKRMIRVDHVEEYKVPKYKEDAD 127
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV---------RNYGFVHMENEQVGREAIQ 269
++ I NLS + L +F YG + D+ R YG+V +N + ++I+
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIK 193
Query: 270 NLNGELVHGQAIKIE 314
+++G + G A+ +E
Sbjct: 194 HMDGGQIDGMAVHVE 208
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---------RNYGFVHLDATGDVNDAIK 507
++ + NL+ + E+F +G + D+ R YG+V D D +IK
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIK 193
Query: 508 ELNG--IDG 528
++G IDG
Sbjct: 194 HMDGGQIDG 202
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
+++G ++ TE L F +G VV I R +GFV + + AI N+
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 276 NGELVHGQAIKIEAAKSPE 332
N + G+ I++ A+ P+
Sbjct: 73 NESELFGKTIRVNFARPPK 91
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
I++G L +K +E+ L L + G VV ++ ++ +GFV E+ AI+ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 276 NGELVHGQAIKIEAAKSPEGAVD 344
N ++G+ IK+ A + E +D
Sbjct: 75 NMIKLYGKPIKVNKASAHEKNMD 97
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTV---------VECDIVRNYGFVHMENEQVGREAIQN 272
IF+GNL + E L F +G + V+ + + F++ + + A++
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161
Query: 273 LNGELVHGQAIKIEAA 320
+NG+ + +AI + A
Sbjct: 162 MNGQFLCNRAITVSYA 177
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
I++G L +K +E+ L L + G VV ++ ++ +GFV E+ AI+ L
Sbjct: 25 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 84
Query: 276 NGELVHGQAIKIEAAKSPEGAVD 344
N ++G+ IK+ A + E +D
Sbjct: 85 NMIKLYGKPIKVNKASAHEKNMD 107
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTV---------VECDIVRNYGFVHMENEQVGREAIQN 272
IF+GNL + E L F +G + V+ + + F++ + + A++
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 171
Query: 273 LNGELVHGQAIKIEAA 320
+NG+ + +AI + A
Sbjct: 172 MNGQFLCNRAITVSYA 187
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
KIFVG L T + E F++FG + E ++ R YGFV + A K+
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 511 LNG-IDGRR 534
N IDGR+
Sbjct: 96 PNPIIDGRK 104
Score = 34.7 bits (76), Expect = 0.058
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
KIF+G L T++ L FE++G + E ++ R YGFV M++ A ++
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 273 LNGELVHGQAIKIEAA 320
N ++ G+ + A
Sbjct: 96 PN-PIIDGRKANVNLA 110
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--------NYGFVHMENEQVGREAIQ 269
F++F G+L ++ ++ L F KY + + +VR YGFV + + A++
Sbjct: 203 FRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMR 262
Query: 270 NLNGELVHGQAIKIEAAKSPEGAVD 344
++G+ V + IK+ + E +D
Sbjct: 263 EMDGKYVGNRPIKLRKSAWKERNID 287
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--------VRNYGFVHMENEQVGREAIQNL 275
+F+ N+ ++ TE D+ F +YG + + ++ Y V E ++ EAI
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 276 NGELVHGQAIKIE 314
N + GQ +K++
Sbjct: 117 NDTDLLGQNVKVD 129
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 35.1 bits (77), Expect = 0.044
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
KIFVG LT T +RE + +FG + + ++R+ +GFV +V+ A+K+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 511 L-NGIDGR 531
+ IDG+
Sbjct: 84 RPHIIDGK 91
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
KIF+G L+ TT+ +R + ++G + + ++R+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRD 57
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 35.1 bits (77), Expect = 0.044
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
KIFVG LT T +RE + +FG + + ++R+ +GFV +V+ A+K+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 511 L-NGIDGR 531
+ IDG+
Sbjct: 84 RPHIIDGK 91
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
KIF+G L+ TT+ +R + ++G + + ++R+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRD 57
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 35.1 bits (77), Expect = 0.044
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
KIFVG LT T +RE + +FG + + ++R+ +GFV +V+ A+K+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 511 L-NGIDGR 531
+ IDG+
Sbjct: 84 RPHIIDGK 91
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
KIF+G L+ TT+ +R + ++G + + ++R+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRD 57
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 355 KIFVGNLTDKT-RAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGI 522
++F+GN+ ++ ELF+ FG ++ + + +GFV + G +++ + LNG+
Sbjct: 84 RVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQGFGFVQFNEAGSADESCRSLNGM 142
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 34.3 bits (75), Expect = 0.076
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +3
Query: 171 LFEKYGTVVECDIVRN------YGFVHMENEQVGREAIQNLNGELVHGQAIKIEAA 320
+FEK G VV+ +I+ N +GFV M+N A NG + G+ +++ A
Sbjct: 1 MFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI-------VRNYGFVHMENEQVGREAIQ 269
T ++ + NL TE LR FEKYG + + + R + FV +E A+
Sbjct: 2 TTRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALA 61
Query: 270 NLNGELVHGQAIKIEAAKSPEGAVDAN 350
N + + + +E + P G DAN
Sbjct: 62 KSNQTFFNSKKLTVEECR-PFG--DAN 85
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 212
T ++F+ NL T E DL+ LF+KYG V E +V
Sbjct: 278 TGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVV 311
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 99 PGTGTFK-IFIGNLSDKTTEADLRPLFE-----KYGTVVECDIV-RNYGFVHMENEQVGR 257
PGT + IF+ NL TTE ++R E ++ D+V R + +V MEN+Q +
Sbjct: 587 PGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANSDLVHRGFAYVVMENDQKAQ 646
Query: 258 EAI 266
+A+
Sbjct: 647 QAL 649
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTV 194
K+F+ N+ + T+ +L+ LF K+GTV
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTV 709
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTV 432
K+FV N+ + E++ LF KFGTV
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTV 709
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVH 233
K+FIG LS TT+ L F ++G VV+ ++R+ H
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKH 88
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVH 233
K+FIG LS TT+ L F ++G VV+ ++R+ H
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKH 108
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVH 233
K+FIG LS TT+ L F ++G VV+ ++R+ H
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKH 109
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+F+G + E DLR LFE++G + E I+++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG + ++R LF++FG + E I+++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 453
K+F+G L+ + EVR LF FG + E ++R
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLR 157
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+F+G + E DLR LFE++G + E I+++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG + ++R LF++FG + E I+++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 453
K+F+G L+ + EVR LF FG + E ++R
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLR 157
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHME-NEQVGREAIQNL 275
KIF+G +S + DL F +YG V + + R+ GF +E G +
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 276 NGELVHGQAIKIEAAKSPE 332
+ + G++++++ AKS E
Sbjct: 90 REQTIKGKSVEVKPAKSRE 108
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECD--------IVRNYGFVHMENEQVGREA 263
K+F+G L +E DLR FE++G V + + RN+ F+ E E+ +A
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHME-NEQVGREAIQNL 275
KIF+G +S + DL F +YG V + + R+ GF +E G +
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 276 NGELVHGQAIKIEAAKSPE 332
+ + G++++++ AKS E
Sbjct: 90 REQTIKGKSVEVKPAKSRE 108
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECD--------IVRNYGFVHMENEQVGREA 263
K+F+G L +E DLR FE++G V + + RN+ F+ E E+ +A
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
>U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical
protein EEED8.10a protein.
Length = 738
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 215
KI + N+S K T++ L+ F +YG + C + R
Sbjct: 113 KIVVSNISAKVTQSQLQSFFSQYGKITSCILPR 145
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+F+G ++ +T+E+ LR FE YG + + +V R Y F+ ++ A + +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 279 GELVHGQAIKIE 314
G V G+ + ++
Sbjct: 166 GIKVDGKRLVVD 177
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 209
T +F+GN+ E ++R +FE++G V E DI
Sbjct: 168 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI 447
+FVGN+ + E+R +F++ G V E DI
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 209
T +F+GN+ E ++R +FE++G V E DI
Sbjct: 168 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI 447
+FVGN+ + E+R +F++ G V E DI
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 209
T +F+GN+ E ++R +FE++G V E DI
Sbjct: 145 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI 177
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI 447
+FVGN+ + E+R +F++ G V E DI
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEEVDI 177
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGT-VVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
+F+ +S + +L F VV+C + YGFV + ++ I ++G+ ++G
Sbjct: 98 VFVRGISRDMPDTELYQAFGGITDGVVQCHVADGYGFVLFDTRANAQKKIVEMDGKTLNG 157
Query: 297 QAIKIEAAK 323
+ I + A+
Sbjct: 158 KLISVSWAR 166
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +1
Query: 406 ELFQKFGT----VVECDIVRNYGFVHLDATGDVNDAIKELNG 519
EL+Q FG VV+C + YGFV D + I E++G
Sbjct: 111 ELYQAFGGITDGVVQCHVADGYGFVLFDTRANAQKKIVEMDG 152
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVEC----DIVRN----YGFVHMENEQVGREAIQNL 275
+FI +L ++DL F +G ++ D V N +GFV EN Q AI +
Sbjct: 337 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 396
Query: 276 NGELVHGQAIKIE 314
NG + + +K++
Sbjct: 397 NGFQIGSKRLKVQ 409
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +1
Query: 382 KTRAPEVRELFQKFGTVVECDIVR-------NYGFVHLDATGDVNDAIK-ELNGIDGRR 534
KT ++ F+ GTVV C+I R +GFV + + G+ N + + IDGRR
Sbjct: 183 KTTDECFQKYFEDIGTVVFCEIKRKSDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRR 241
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRNYGF 465
+F+G L A E+ ++F +FG V V DI ++YG+
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 358
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRNYGF 465
+F+G L A E+ ++F +FG V V DI ++YG+
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 358
>AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical
protein Y65B4BL.3 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +1
Query: 28 LVFIFLTCVIYCYSLYIVTHNLKCR 102
L+F F++C ++ Y++Y+V H + +
Sbjct: 104 LIFFFISCTMFLYAVYLVKHETELK 128
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRNYGF 465
+F+G L A E+ ++F +FG V V DI ++YG+
Sbjct: 107 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 144
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRNYGF 465
+F+G L A E+ ++F +FG V V DI ++YG+
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 358
>AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical
protein Y52D5A.1 protein.
Length = 914
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 39 IFNLCYILLFFVHSNP*SKMPGTGTFKI-FIGNL 137
IF+L I +F SN K+P +GTF + +IGN+
Sbjct: 615 IFDLPVIYIFLKMSNSIFKLPASGTFVLMYIGNV 648
>AF016422-6|AAY86271.1| 128|Caenorhabditis elegans Hypothetical
protein R09E12.9 protein.
Length = 128
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 153 EADLRPLFEKYGTVVECDI-VRNYGFVHMENEQVGREAIQNLNGELVHG-QAIKIEAAKS 326
EA L+P FEKYG +V+ ++ G+ H V ++ E V+G +AI AK
Sbjct: 10 EALLKPQFEKYGKLVDDEVWAEVEGYYHPNGVLVHKDK------EAVYGSKAITAHLAKF 63
Query: 327 PEG 335
EG
Sbjct: 64 AEG 66
>U64856-1|AAB04985.2| 429|Caenorhabditis elegans Hypothetical
protein T25F10.3 protein.
Length = 429
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 636 QWPPRATAGKTARGRPCPAAAGHDSSTTXTLMGCPSTINTVQ 511
Q PP +TAR P ++ +T T++G +T+ +Q
Sbjct: 336 QPPPPYAVSRTARREALPPLPSYEDATKDTVIGAAATVIEMQ 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,598,477
Number of Sequences: 27780
Number of extensions: 297502
Number of successful extensions: 1198
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -