Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0642
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 54 6e-08
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 53 1e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 52 3e-07
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 52 3e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 51 8e-07
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 50 1e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 50 1e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 50 1e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 50 1e-06
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 50 1e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 49 2e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 49 2e-06
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 49 2e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 49 3e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 49 3e-06
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 48 4e-06
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 48 4e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 48 4e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 48 5e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 48 5e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 48 5e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 48 7e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 7e-06
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 47 9e-06
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 47 9e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 47 9e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 47 9e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 47 9e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 47 9e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 47 9e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 46 2e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 3e-05
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 45 4e-05
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 45 4e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 45 4e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 45 4e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 45 5e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 45 5e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 45 5e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 44 7e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 44 7e-05
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 44 9e-05
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 44 9e-05
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 44 9e-05
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 44 9e-05
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 44 9e-05
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 44 9e-05
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 44 1e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 44 1e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 43 2e-04
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 43 2e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 2e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 3e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 42 3e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 42 3e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 42 3e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 42 4e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 5e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 42 5e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 41 6e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 41 6e-04
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 41 8e-04
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 40 0.001
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 40 0.001
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 40 0.001
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.001
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 40 0.002
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 40 0.002
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 40 0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 40 0.002
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 40 0.002
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 40 0.002
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 40 0.002
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 39 0.003
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 39 0.003
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 39 0.003
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 39 0.003
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 39 0.003
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.003
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 39 0.003
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 39 0.003
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 38 0.004
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 38 0.004
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 38 0.004
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 38 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.006
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 38 0.006
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 38 0.006
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 38 0.008
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 37 0.010
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.010
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 37 0.010
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.013
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 37 0.013
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.018
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 36 0.018
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.023
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.023
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.023
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 36 0.023
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.031
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.031
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 36 0.031
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.031
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 36 0.031
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.031
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.031
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.054
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 35 0.054
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 35 0.054
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 35 0.054
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 34 0.071
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 34 0.094
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 34 0.094
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.094
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.094
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.094
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 34 0.094
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 34 0.094
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.12
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 33 0.12
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.12
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.12
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 33 0.12
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 33 0.16
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.16
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 33 0.16
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.22
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 32 0.29
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 32 0.29
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.38
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 32 0.38
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.50
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 31 0.50
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.50
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.66
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 31 0.66
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 31 0.66
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 31 0.66
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 31 0.88
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.88
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 30 1.2
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 1.2
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 1.5
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 1.5
At2g11090.1 68415.m01187 expressed protein 30 1.5
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 30 1.5
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 29 2.7
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 29 2.7
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 29 2.7
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 3.5
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 3.5
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 3.5
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 29 3.5
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 3.5
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 3.5
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ... 29 3.5
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 29 3.5
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 29 3.5
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 29 3.5
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 28 6.2
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 28 6.2
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 28 6.2
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 28 6.2
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 8.2
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 27 8.2
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 27 8.2
At1g53070.1 68414.m06009 legume lectin family protein contains P... 27 8.2
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 27 8.2
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 287
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRD 68
Query: 288 VHGQAIKIEAAK-SPEGAVD 344
G I +EA++ +P G+ D
Sbjct: 69 FDGSRITVEASRGAPRGSRD 88
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG--IDG 528
+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G DG
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDG 71
Query: 529 RR-TAHEGXSCRRVVSGSGRAWATPSSLXRC 618
R T R +G P S RC
Sbjct: 72 SRITVEASRGAPRGSRDNGSRGPPPGS-GRC 101
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 53.2 bits (122), Expect = 1e-07
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
++ FIG L+ T++ LR FEKYG +VE +V R +GF+ + ++ EAI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 270 NLNGELVHGQAIKIEAAKSPEGAVDANH*NIRG*FNGQDARARS 401
+NG + G+ I ++ A+ +G ++ RG G D R RS
Sbjct: 67 AMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYD-RDRS 109
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+ F+G L T +R+ F+K+G +VE +V R +GF+ D +++AI
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 511 LNGID 525
+NG+D
Sbjct: 68 MNGMD 72
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Frame = +3
Query: 78 SNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVH 233
S+P S G T K+++ LS +TTE LR FE++G ++ ++V + + F+
Sbjct: 66 SSPPSSSSGPKT-KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124
Query: 234 MENEQVGREAIQNLNGELVHGQAIKIEAAKS 326
E E+ +AIQ ++G+ + G+ I +E AK+
Sbjct: 125 YETEEEAMKAIQGMHGKFLDGRVIFVEEAKT 155
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 266
G +F+ NL + T A L+ +F+K+G +V C + R YGFV E E AI
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 267 QNLNGELVHGQAIKI 311
Q LN +V + I +
Sbjct: 170 QTLNSTIVADKEIYV 184
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
+FV NL + ++++F+KFG +V C + R YGFV + + AI+ LN
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
I++ N++ TE +LR F + GT+ ++ + +GFV + +A++ +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 279 GELVHGQAIKIEAAKSPE 332
G++ HG+ + + A+ E
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+++ NL +E LR F ++G +V I R Y FV+ +N + R A + +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 279 G 281
G
Sbjct: 263 G 263
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
+++ NL +RE F +FG +V I R Y FV+ D D A + +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 517 G 519
G
Sbjct: 263 G 263
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 287
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRD 68
Query: 288 VHGQAIKIEAAK-SPEGAVD 344
G I +E ++ +P G+ D
Sbjct: 69 FDGSRITVEFSRGAPRGSRD 88
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNG--IDG 528
+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G DG
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDG 71
Query: 529 RRTAHE 546
R E
Sbjct: 72 SRITVE 77
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 50.8 bits (116), Expect = 8e-07
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Frame = +3
Query: 90 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 245
S+ P T K+FI LS T+E LR FE +G +VE I+ + Y F+ E
Sbjct: 274 SESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTE 333
Query: 246 QVGREAIQNLNGELVHGQAIKIEAAKS 326
+ A++ +NG++++G I ++ AK+
Sbjct: 334 EAAGTALKEMNGKIINGWMIVVDVAKT 360
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 293
IF+G L TE DL F +G VV I + GFV N Q EAI NLNG ++
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 294 GQAIKIEAAKSP 329
+++ +SP
Sbjct: 389 KNTVRLSWGRSP 400
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 270 NLNGELVHGQAIKIEAAKS 326
+NG+ + G+ I + A+S
Sbjct: 66 EMNGKELDGRVITVNEAQS 84
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 511 LNG--IDGR 531
+NG +DGR
Sbjct: 67 MNGKELDGR 75
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 270 NLNGELVHGQAIKIEAAKS 326
+NG+ + G+ I + A+S
Sbjct: 66 EMNGKELDGRVITVNEAQS 84
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 511 LNG--IDGR-RTAHEGXSCRRVVSGSGR 585
+NG +DGR T +E S G GR
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGR 94
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 270 NLNGELVHGQAIKIEAAKS 326
+NG+ + G+ I + A+S
Sbjct: 66 EMNGKELDGRVITVNEAQS 84
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 511 LNG--IDGR-RTAHEGXSCRRVVSGSGR 585
+NG +DGR T +E S G GR
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGR 94
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLN 278
+F+GN +T ++DL LF+KYG V D+ Y FV+ E+E+ +AI+ L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 516
+FVGN +TR ++ LF K+G V D+ Y FV+ + D DAI++L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +3
Query: 111 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 287
T +F+ N +T E D+ FE YG V I RN+ FV E ++ +A++
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSK 151
Query: 288 VHGQAIKIE-AAKSPEGAVDAN 350
+ + + +E A K + D N
Sbjct: 152 ILDRVVSVEYALKDDDERDDRN 173
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 266
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 267 QNLNGELVHGQAIKIEAAK-SPEGAVDANH*NIRG*FNGQDARARSPR 407
+ L+G +V G+ I ++ AK P + + + +R+RSPR
Sbjct: 75 ERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPR 122
Score = 33.5 bits (73), Expect = 0.12
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+ V N+T +T A ++ LF K+G VV+ I R+ + FV + + A++ L
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 514 NG--IDGR----RTAHEGXSCRRVVSGSGRAWATPSSLXRCGPRGPLVPRS 648
+G +DGR + A G + ++ GR P R R P RS
Sbjct: 78 DGRVVDGREITVQFAKYGPNAEKI--SKGRVVEPPPKSRRSRSRSPRRSRS 126
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 266
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 267 QNLNGELVHGQAIKIEAAK-SPEGAVDANH*NIRG*FNGQDARARSPR 407
+ L+G +V G+ I ++ AK P + + + +R+RSPR
Sbjct: 75 ERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPR 122
Score = 33.5 bits (73), Expect = 0.12
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+ V N+T +T A ++ LF K+G VV+ I R+ + FV + + A++ L
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 514 NG--IDGR----RTAHEGXSCRRVVSGSGRAWATPSSLXRCGPRGPLVPRS 648
+G +DGR + A G + ++ GR P R R P RS
Sbjct: 78 DGRVVDGREITVQFAKYGPNAEKI--SKGRVVEPPPKSRRSRSRSPRRSRS 126
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
F+I++GNL L LF ++G VV+ +V R +GFV M NE AI
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 270 NLNGELVHGQAIKIEAAK 323
L+G+ + G+AIK+ A+
Sbjct: 267 ALDGQNLEGRAIKVNVAE 284
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K+F+GNL L LFE+ GTV +++ R +GFV M + +A++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 273 LNGELVHGQAIKIEAAKSPEGA 338
N V+G+ + + A +P G+
Sbjct: 174 FNSFEVNGRRLTVNRA-APRGS 194
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+I+VGNL + + LF + G VV+ +V R +GFV + +VN AI
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 511 LNG--IDGR 531
L+G ++GR
Sbjct: 268 LDGQNLEGR 276
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVGNL + + LF++ GTV +++ R +GFV + + A+++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 511 LNG--IDGRR 534
N ++GRR
Sbjct: 174 FNSFEVNGRR 183
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 49.2 bits (112), Expect = 2e-06
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAI 266
G ++++GNL +E DLR +FE +G+V E + + +GFV + R A+
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
Query: 267 QNLNGEL-VHGQAIKIEAAKSPEGAVDANH*NIRG*FNGQDARARSPRAVS 416
NLNG+L + G+AIK+ A +A G + D S A S
Sbjct: 343 -NLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQS 392
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVV-------ECDIVRNYGFVHLDATGDVNDAIKEL 513
+++VGNL ++R++F+ FG+V E + + +GFV D +A+ L
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NL 344
Query: 514 NG 519
NG
Sbjct: 345 NG 346
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K+FIG ++ E LR F KYG VV+ ++ R +GFV + + AIQ
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 273 LNGELVHGQAIKIEAA 320
L+G +HG+ +K+ A
Sbjct: 101 LDGRDLHGRVVKVNYA 116
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+F+G + +RE F K+G VV+ ++ R +GFV ++ + AI+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 511 LNGID 525
L+G D
Sbjct: 101 LDGRD 105
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVHMENEQVGREAIQNLNGELVH 293
I + NL TE +L+ F + G V+ I + YG+V + EA+Q + G+++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIG 298
Query: 294 GQAIKIEAAKSP 329
QA++I +K+P
Sbjct: 299 QQAVRISWSKNP 310
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
IF+G+L+ T+ L+ F Y +V +V + YGFV E A+
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 273 LNGELVHGQAIKIEAA 320
+NG + ++I AA
Sbjct: 178 MNGLYCSTRPMRISAA 193
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 293
+F GN E DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 294 GQAIKIEAAKSPEG 335
G+ +++E KS G
Sbjct: 64 GRRLRVEWTKSERG 77
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +3
Query: 120 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 158
Query: 297 QAIKIEAAKSPEGAVDANH*NIRG*FNGQDARARSP 404
+ I +E A + A H R + R RSP
Sbjct: 159 KVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSP 194
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGID-GRR 534
+F GN R ++ LF+K+G V D+ + FV+++ D DAI+ L+ + GR+
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 287
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 288 VHGQAIKIEAAKSPEGAVD-ANH*NI 362
+ GQ +K+ A + D ++H NI
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNI 150
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVV----ECDIV--------RNYGFVHMENEQVGR 257
F IF+G+LS + T+A L F + + + ++ R +GFV N+Q +
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQ 207
Query: 258 EAIQNLNGELVHGQAIK 308
AI +NG+ V + I+
Sbjct: 208 TAINEMNGKWVSSRQIR 224
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIKELNG 519
++ GN+ + ++E+F G + C ++R +YGFVH + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNG 122
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 284
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 333
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 287
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 288 VHGQAIKIEAAKSPEGAVD-ANH*NI 362
+ GQ +K+ A + D ++H NI
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNI 150
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
F IF+G+LS + T+A L F + + + ++ R +GFV N+Q + AI
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
Query: 270 NLNGELVHGQAIK 308
+NG+ V + I+
Sbjct: 208 EMNGKWVSSRQIR 220
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIKELNG 519
++ GN+ + ++E+F G + C ++R +YGFVH + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNG 122
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 284
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 329
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 48.0 bits (109), Expect = 5e-06
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K+FIG LS TTE L F K G VVE IV + +GFV + ++A+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 273 LNGELVHGQAIKIEAAKSPE 332
NG+ ++G+ I ++ AK+ +
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQ 114
Score = 36.7 bits (81), Expect = 0.013
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+F+G L+ T + E F K G VVE IV + +GFV + + A+ E
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 511 LNG--IDGRRTAHEGXSCRRVVSGSG 582
NG ++GR + ++ + G G
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLGGGG 120
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 293
IF+G L T+ DL+ F ++G +V I + GFV N EA++ LNG ++
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 367
Query: 294 GQAIKIEAAKSP 329
Q +++ ++P
Sbjct: 368 KQTVRLSWGRNP 379
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG-IDG 528
IFVG L ++++ F +FG +V I + GFV + +A+++LNG + G
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 367
Query: 529 RRT 537
++T
Sbjct: 368 KQT 370
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
IF+G+L+ ++A L F EKY +V +V + YGFV +E +A+
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 273 LNGELVHGQAIKIEAA 320
+NG +A++I A
Sbjct: 261 MNGVKCSSRAMRIGPA 276
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFE--KYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 269
I++G+L + EA L F + +V ++RN YGFV E+ V + +Q
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 270 NLNG 281
NG
Sbjct: 165 EFNG 168
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 293
IF+G L T+ DL+ F ++G +V I + GFV N EA++ LNG ++
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 365
Query: 294 GQAIKIEAAKSP 329
Q +++ ++P
Sbjct: 366 KQTVRLSWGRNP 377
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG-IDG 528
IFVG L ++++ F +FG +V I + GFV + +A+++LNG + G
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 365
Query: 529 RRT 537
++T
Sbjct: 366 KQT 368
Score = 31.5 bits (68), Expect = 0.50
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
IF+G+LS ++ L F EKY +V +V + YGFV +E +A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 273 LNGELVHGQAIKIEAA 320
+NG +A++I A
Sbjct: 259 MNGVKCSSRAMRIGPA 274
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 47.6 bits (108), Expect = 7e-06
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 293
IF+G + TE DL+ +F ++G +V I + GFV N +A+ LNG +
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLG 339
Query: 294 GQAIKIEAAKSP 329
GQ+I++ +SP
Sbjct: 340 GQSIRLSWGRSP 351
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
++++GNL T ++L +F + GTVV+ IV R +GFV M + + +EA+Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 273 LNGELVHGQAIKIEAAKSPEG 335
N + G+ +K+ + P G
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRG 197
Score = 33.9 bits (74), Expect = 0.094
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K++ GNL T L+ F V+ ++ R +GF+ E+ + + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 273 LNGELVHGQAIKIEAAKSPE 332
+NG V G+A+++ A E
Sbjct: 280 MNGVEVEGRALRLNLASERE 299
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+++VGNL + E+ ++F + GTVV+ IV R +GFV + + + +A++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 511 LNG--IDGR 531
N I GR
Sbjct: 177 FNSSQIGGR 185
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 47.2 bits (107), Expect = 9e-06
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 293
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 294 GQAIKIEAAKSPEG 335
G+ +++E K+ G
Sbjct: 64 GRRLRVEWTKNDRG 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGIDGRRT 537
+F GN R ++ LF+K+G V D+ + FV+++ D DAI+ L+ + RT
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +3
Query: 120 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
+F+ N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 297 QAIKIEAAKSPEGAVDANH*NIRG*FNGQDARARSP 404
+ I +E A + + + R D R RSP
Sbjct: 158 KVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSP 193
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 47.2 bits (107), Expect = 9e-06
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 293
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 294 GQAIKIEAAKSPEG 335
G+ +++E K+ G
Sbjct: 64 GRRLRVEWTKNDRG 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGIDGRRT 537
+F GN R ++ LF+K+G V D+ + FV+++ D DAI+ L+ + RT
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +3
Query: 120 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
+F+ N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 297 QAIKIEAAKSPEGAVDANH*NIRG*FNGQDARARSP 404
+ I +E A + + + R D R RSP
Sbjct: 158 KVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSP 193
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 257
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 258 EAIQNLNGELVHGQAIKIEAAKS 326
+AI+ +NG+ + G++I + A+S
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQS 86
Score = 30.7 bits (66), Expect = 0.88
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 511 LNG--IDGRR-TAHEGXS 555
+NG +DGR T +E S
Sbjct: 69 MNGQDLDGRSITVNEAQS 86
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 257
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 258 EAIQNLNGELVHGQAIKIEAAKS 326
+AI+ +NG+ + G++I + A+S
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQS 86
Score = 30.7 bits (66), Expect = 0.88
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 511 LNG--IDGRR-TAHEGXS 555
+NG +DGR T +E S
Sbjct: 69 MNGQDLDGRSITVNEAQS 86
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 273 LNGELVHGQAIKIEAAKSPEGAVDAN 350
++G + + I + A+ G D +
Sbjct: 73 MHGRELGNKVISVNKAEPKVGGEDVD 98
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+IFVG L+ ++ F ++G + EC I+ R +GF+ +DAIK
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 511 LNG 519
++G
Sbjct: 73 MHG 75
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 273 LNGELVHGQAIKIEAAKSPEGAVDAN 350
++G + + I + A+ G D +
Sbjct: 73 MHGRELGNKVISVNKAEPKVGGEDVD 98
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+IFVG L+ ++ F ++G + EC I+ R +GF+ +DAIK
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 511 LNG 519
++G
Sbjct: 73 MHG 75
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 47.2 bits (107), Expect = 9e-06
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 287
+++GN+ + TE L+ +F G V C ++R +YGFVH + + AI +LNG
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 288 VHGQAIKIE-AAKSPEGAVDANH*NI 362
+ GQ IK+ A S + ++H NI
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNI 141
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
F IF+G+LS + T+A L F Y T + ++ R +GFV N+Q + AI
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198
Query: 270 NLNGELVHGQAIK 308
+ G+ + + I+
Sbjct: 199 EITGKWLGSRQIR 211
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIKELNG 519
++VGN+ + P ++E+F G V C ++R +YGFVH AI LNG
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNG 113
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
F++++GNL L LF ++G VVE +V R +GFV M + EAI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 270 NLNGELVHGQAIKIEAAK 323
L+G+ + G+AI++ A+
Sbjct: 304 ALDGQNLEGRAIRVNVAE 321
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVGREAIQN 272
K+F+GNL+ L LFE+ GTV E D R +GFV M + A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 273 LNGELVHGQAIKIEAAKSPEGA 338
N ++G+ + + A +P G+
Sbjct: 211 FNRYDLNGRLLTVNKA-APRGS 231
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+++VGNL + +LF + G VVE +V R +GFV + ++N+AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 511 LNG--IDGR 531
L+G ++GR
Sbjct: 305 LDGQNLEGR 313
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAIKE 510
K+FVGNL + + LF++ GTV E D R +GFV + + + A+++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 511 LNGID 525
N D
Sbjct: 211 FNRYD 215
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGREAIQNL 275
+++G + TE DL +F +YG +V+ +++R+ G F+ E+++ A+ NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 276 NGELVHGQAIKIE 314
NG LV G+ IK++
Sbjct: 98 NGALVLGRTIKVD 110
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 46.0 bits (104), Expect = 2e-05
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Frame = +3
Query: 57 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC----DIV---R 215
I + + +P +++ G G +FI NL L F +GT++ C D+V +
Sbjct: 115 IRIMLSNRDPSTRLSGKGN--VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSK 172
Query: 216 NYGFVHMENEQVGREAIQNLNGELVHGQAIKI-------EAAKSPEGAV 341
YGFV E E+ + AI LNG L++ + + + + A+S GAV
Sbjct: 173 GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAV 221
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+++ NL D + L+ +F +YG V C ++ N +GFV N + A++ +N
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 279 GELVHGQAIKIEAAKSPE 332
G+++ + + + A+ E
Sbjct: 390 GKMIGRKPLYVALAQRKE 407
Score = 34.7 bits (76), Expect = 0.054
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVEC----DIV---RNYGFVHLDATGDVNDAIKELN 516
+F+ NL + E F FGT++ C D+V + YGFV + AI +LN
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 517 G-IDGRRTAHEGXSCRRVVSGSGRAWATPS 603
G + + G RR + A PS
Sbjct: 194 GMLLNDKQVFVGHFVRRQDRARSESGAVPS 223
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+++ NL + T+ +L+ F KYG + ++ R++GFV+ + + A++ +N
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 279 G 281
G
Sbjct: 287 G 287
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 287
+++GN+ + TE L+ +F G V ++R +YGFVH + + AI +LNG
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 288 VHGQAIKIEAAKSPEGAVD-ANH*NI 362
+ GQ IK+ A + D ++H NI
Sbjct: 121 LFGQPIKVNWAYATGQREDTSSHFNI 146
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
F IF+G+LS + T+A L F + + + ++ R +GFV N+Q + AI
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Query: 270 NLNGELVHGQAIK 308
+NG+ + + I+
Sbjct: 204 EMNGKWLSSRQIR 216
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIKELNG 519
++VGN+ + P ++E+F G V ++R +YGFVH AI LNG
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNG 118
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 135 LSDKTTEADLRPLFEKYGTVV---ECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAI 305
LS TT+ LR LF + ++ + + +GF+ E+E ++A++ LNG++V+G+ I
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
Query: 306 KIEAAKSPE 332
+E AK E
Sbjct: 138 FVETAKEVE 146
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 373 LTDKTRAPEVRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNG--IDGR 531
L+ T +R+LF F ++ + + +GF+ ++ D A+K LNG ++GR
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGR 135
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNL-NGELVHG 296
+++GN T +DL LF K+G V D+ Y FV+ E+E+ +AI+ N +G
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Query: 297 -QAIKIEAAKSPEG 335
+ + +E AK +G
Sbjct: 64 RRKLSVEWAKDFQG 77
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIK 507
++VGN TR ++ LF KFG V D+ Y FV+ + D DAI+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 111 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 287
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 153
Query: 288 VHGQAIKIEAAKSPEG 335
+ + + +E A G
Sbjct: 154 LLDKVVSVEYALREAG 169
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 45.2 bits (102), Expect = 4e-05
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Frame = +3
Query: 30 GVHIFNLCYILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 209
GV LCY + S SK G +F+G LS TTE LR + KYG + +
Sbjct: 37 GVRRALLCYNAGLYDPSGD-SKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRL 95
Query: 210 VRN--------YGFVHMENEQVGREAIQNLNGELVHGQAIKIE 314
VR+ YGFV E E+ A ++ + L+ G+ I ++
Sbjct: 96 VRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVD 138
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FVG L+ T +RE+ K+G + +VR+ YGFV + ++ A ++
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 514 NG--IDGR 531
+ IDGR
Sbjct: 126 HHSLIDGR 133
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
KIF+G +S T E LR F KYG VV+ I+ R + FV + + A+Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 273 LNGELVHGQAIKIEAA 320
L+G+ +HG+ I++ A
Sbjct: 94 LDGQDLHGRRIRVNYA 109
Score = 35.1 bits (77), Expect = 0.041
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
KIFVG ++ T +RE F K+G VV+ I+ R + FV +T + ++A+ +
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 511 LNGID--GRR 534
L+G D GRR
Sbjct: 94 LDGQDLHGRR 103
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 293
IF+G L T+ +L+ +F ++G ++ I + GFV N+ A+ LNG +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLG 321
Query: 294 GQAIKIEAAKSPEGAVD 344
GQ+I++ +SP D
Sbjct: 322 GQSIRLSWGRSPNKQSD 338
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
IF+G+L+ + T+ L F+ YG+V +V + YGFV +E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 273 LNGELVHGQAIKIEAA 320
+NG+ + ++I A
Sbjct: 216 MNGQYCSTRPMRIGPA 231
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 519
IFVG L E++ +F +FG ++ I + GFV A+ LNG
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNG 317
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
+IF+G LS + T+ DL F ++G +++C I+ R +GF+ + + E+I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 273 LNGELVHGQAIKIEAAKSPEGAVDANH*NIRG 368
++G + I + A+ G D RG
Sbjct: 68 MHGRDFGDRVISVNRAEPKLGRDDGESHGSRG 99
Score = 35.5 bits (78), Expect = 0.031
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+IFVG L+ + ++ F +FG +++C I+ R +GF+ ++++I+E
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 511 LNGID 525
++G D
Sbjct: 68 MHGRD 72
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 293
+F+G L T+ L+ +F +YG +V I + GFV + EA++ LNG +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLG 322
Query: 294 GQAIKIEAAKSP 329
G +++ +SP
Sbjct: 323 GTTVRLSWGRSP 334
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAI 266
+ IF+G+L+ T+ L F Y +V +V + YGFV +E A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 267 QNLNGELVHGQAIKIEAAKSPEG 335
+NG + ++I A S +G
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKG 237
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 293
IF+G + + DLR F ++G VV I + GFV + + +AI++LNG ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 294 GQAIKIEAAKSP 329
+++ +SP
Sbjct: 383 KNTVRLSWGRSP 394
Score = 35.1 bits (77), Expect = 0.041
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG-IDG 528
IFVG + ++R+ F +FG VV I + GFV DAI+ LNG + G
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 529 RRTAH--EGXSCRRVVSG-SGRAW 591
+ T G S + G SG+ W
Sbjct: 383 KNTVRLSWGRSPNKQWRGDSGQQW 406
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
+F+G+LS T+ L F ++Y +V +V + YGFV +E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 273 LNGELVHGQAIKIEAAKSPEGAV 341
+NG + +++ A +P+ A+
Sbjct: 264 MNGAYCSNRQMRVGIA-TPKRAI 285
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+++G+L E L F G V ++RN YGFV + E +QN
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 276 NGELV 290
+G ++
Sbjct: 170 SGSVM 174
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 44.4 bits (100), Expect = 7e-05
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Frame = +3
Query: 57 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------R 215
I + + +P +++ G G IFI NL L F +GT++ C + +
Sbjct: 119 IRIMLSNRDPSTRLSGKGN--IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK 176
Query: 216 NYGFVHMENEQVGREAIQNLNGELVHGQAIKI-EAAKSPEGAVDAN 350
YGFV E E+ + AI LNG L++ + + + + E A D N
Sbjct: 177 GYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDEN 222
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+++ NL D + L+ +F +YG V ++ R +GFV N + A+ +N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 279 GELVHGQAIKIEAAKSPE 332
G+++ + + I A+ E
Sbjct: 394 GKMIGRKPLYIALAQRKE 411
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 516
++V NL + E+R+ F KFG + ++R+ +GFV+ + T A++++N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 517 GI 522
GI
Sbjct: 291 GI 292
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
IF+ NL + E F FGT++ C + + YGFV + AI +LN
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 517 GI 522
G+
Sbjct: 198 GM 199
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+++ NL + E +LR F K+G + ++R+ +GFV+ E + A++ +N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 279 G 281
G
Sbjct: 291 G 291
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+F+ NLS +T +D+ F G VV ++ N YGFV + ++A++N N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 279 GELVHGQAIKIEAAKS 326
GE +H I I+ AK+
Sbjct: 306 GEYLHDHKIFIDVAKT 321
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY-------GFVHLDATGDVNDAIKELN 516
+FV NL +T+ P + + F+K G VV ++ N GFV + + +A+++ N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 517 G 519
G
Sbjct: 189 G 189
Score = 33.9 bits (74), Expect = 0.094
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 278
+F+ NL +T ++ F+K G VV ++ N GFV + EA+Q N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 279 GELVHGQAIKIEAA 320
GE + I ++ A
Sbjct: 189 GECLDNNKIFLDVA 202
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 278
+F+ NLS +T + + F+ VV ++ N+ GFV + ++A+Q +N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 279 GELVHGQAIKIEAAK 323
GE + + I ++ +
Sbjct: 551 GENLRSREIFLDVVE 565
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +3
Query: 120 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 296
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 117
Query: 297 QAIKIEAAKSPEGAVDANH*NIRG*FNGQDARARSP 404
+ I +E A + A H R + R RSP
Sbjct: 118 KVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSP 153
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 126 IGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVHGQ 299
+ NLS T LR LF GTVV+C I ++ ++ N + A+ LN V G+
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALA-LNNTEVFGR 413
Query: 300 AIKIEAAKS 326
A+ +E AKS
Sbjct: 414 ALNVEIAKS 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 364 VGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 477
V NL+ ++R+LF GTVV+C I + +++
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIE 392
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 284
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 285 LVHGQAIKIEAAKSPEGAVDANH*NIRG*FNG 380
G +++E A + D + RG FNG
Sbjct: 69 DFDGHRLRVELAHGGRRSSD----DTRGSFNG 96
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGI 522
++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 523 D 525
D
Sbjct: 69 D 69
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 284
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 285 LVHGQAIKIEAAKSPEGAVDANH*NIRG*FNG 380
G +++E A + D + RG FNG
Sbjct: 69 DFDGHRLRVELAHGGRRSSD----DTRGSFNG 96
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGI 522
++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 523 D 525
D
Sbjct: 69 D 69
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 284
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 285 LVHGQAIKIEAAKSPEGAVDANH*NIRG*FNG 380
G +++E A + D + RG FNG
Sbjct: 69 DFDGHRLRVELAHGGRRSSD----DTRGSFNG 96
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGI 522
++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 523 D 525
D
Sbjct: 69 D 69
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+++ NLS+ E LR +F YG +V ++ + +GFV N + ++A + LN
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 279 GELVHGQAIKIEAAKSPEGAV 341
G LV G+ I + A+ E +
Sbjct: 366 GFLVDGKPIVVRVAERKEDRI 386
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAI 266
TG +++ NL T + L +F +G+++ C +V + +GFV + EQ A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 267 QNLNGELVHGQAI 305
L+G +V+G+ +
Sbjct: 169 SALHGSMVYGKKL 181
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +3
Query: 60 LLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RN 218
++ +S+ S +G +F+ NL L F GT+V C + R
Sbjct: 116 MIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRG 175
Query: 219 YGFVHMENEQVGREAIQNLNGELVHGQAI 305
YGFV + E + AI+ LNG++++ + I
Sbjct: 176 YGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+++ NL D T+ LR LF ++GT+ C ++R+ GFV + +N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 279 GELVHGQAIKIEAAKSPE 332
G++V G+ + + A+ E
Sbjct: 390 GKMVGGKPLYVALAQRKE 407
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+++ NLS+ TT+ +L+ F +YG++ ++R+ +GFV+ EN + A++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 279 GE 284
G+
Sbjct: 287 GK 288
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 516
++V NL D ++RELF +FGT+ C ++R+ GFV A + + + E+N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 517 G 519
G
Sbjct: 390 G 390
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
+FV NL + E F GT+V C + R YGFV D +AI++LN
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 517 G 519
G
Sbjct: 196 G 196
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 516
++V NL++ T E++ F ++G++ ++R+ +GFV+ + D A++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 517 G 519
G
Sbjct: 287 G 287
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 272
K++IG LS T E L+ F + V E ++ N YGFV+ +E AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 273 LNGELVHGQAIKIEAAK 323
+NG+ ++G I + AK
Sbjct: 92 MNGQELNGFNISVNVAK 108
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
K+++G L+ T +++ F F V E ++ N YGFV+ + N AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 511 LNG 519
+NG
Sbjct: 92 MNG 94
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +1
Query: 364 VGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNG 519
V NL++ TR P++ ELF+ FG V C + R +GFV + D AI +LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +3
Query: 126 IGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLNG 281
+ NLS+ T DL LF +G V C + R +GFV + + + AI LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 282 ELVHGQAIKIE 314
+++E
Sbjct: 238 YGYDNLILRVE 248
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 257
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 246 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 258 EAIQNLNGELVHGQAIKIEAAKS 326
+AI +LNG + G+ I++ A++
Sbjct: 305 KAINSLNGADLDGRQIRVSEAEA 327
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 273 LNGELVHGQAIKIEAAKSP 329
NG G+ +++ A P
Sbjct: 160 FNGYEFEGRPLRVNAGPPP 178
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 511 LNG--IDGRR 534
LNG +DGR+
Sbjct: 310 LNGADLDGRQ 319
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVGNL+ + ++ +LF+ G V +++ R +GFV + +V A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 511 LNGID 525
NG +
Sbjct: 160 FNGYE 164
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 257
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 254 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 258 EAIQNLNGELVHGQAIKIEAAKS 326
+AI +LNG + G+ I++ A++
Sbjct: 313 KAINSLNGADLDGRQIRVSEAEA 335
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 273 LNGELVHGQAIKIEAAKSP 329
NG G+ +++ A P
Sbjct: 160 FNGYEFEGRPLRVNAGPPP 178
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 511 LNG--IDGRR 534
LNG +DGR+
Sbjct: 318 LNGADLDGRQ 327
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVGNL+ + ++ +LF+ G V +++ R +GFV + +V A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 511 LNGID 525
NG +
Sbjct: 160 FNGYE 164
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+++G L TE +R +F YG+V+ IV + YGFV N + +AI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 279 GELVHGQAIKIEAAKSPEGAVD 344
G+ + G+A+++ + G ++
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMN 90
Score = 31.5 bits (68), Expect = 0.50
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 516
++VG L VR +F +G+V+ IV + YGFV +DAI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 517 G--IDGRRTAHEGXSCR--RVVSGSGR 585
G I GR + R R+ G GR
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMNPGPGR 95
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
+++IGN+ T L L E++G V + ++ R +GF M++ + ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 273 LNGELVHGQAIKIEAAKSP 329
LNG V G+ IK+ + P
Sbjct: 137 LNGNTVEGREIKVNITEKP 155
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
++++GN+ ++ +L ++ G V + ++ R +GF + + D N +++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 511 LNG--IDGR 531
LNG ++GR
Sbjct: 137 LNGNTVEGR 145
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 270 NLNG 281
+NG
Sbjct: 66 EMNG 69
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 511 LNGIDG 528
+NG G
Sbjct: 67 MNGSGG 72
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 272
++++GNLS TT+ LR F YG VV+ ++R+ +GFV + A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 273 LNGELVHGQAIKIE 314
++G+ ++G+ + ++
Sbjct: 64 MDGKELNGRRVSVK 77
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 284
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 285 LVHGQAIKIEAAKSPEGAVDANH*NIRG*FNGQDARAR 398
G +++E A G ++H + RG ++G+ R
Sbjct: 69 DFDGHHLRVELA---HGGRRSSH-DARGSYSGRGRGGR 102
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGI 522
I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 523 D 525
D
Sbjct: 69 D 69
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 284
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 285 LVHGQAIKIEAAKSPEGAVDANH*NIRG*FNGQDARAR 398
G +++E A G ++H + RG ++G+ R
Sbjct: 69 DFDGHHLRVELA---HGGRRSSH-DARGSYSGRGRGGR 102
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGI 522
I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 523 D 525
D
Sbjct: 69 D 69
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 266
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V E +
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Query: 267 QNLNGELVHGQAIKIEAAKS 326
G ++ ++E K+
Sbjct: 168 S--KGNMIDMADTQVEIKKA 185
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
KIFVG + E+++ F K+G VVE ++R+ +GFV D+ V++ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 511 LNGID 525
N ID
Sbjct: 170 GNMID 174
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 257
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 258 EAIQNLNGELVHGQAIKIEAAKSPEGA 338
+ I++ + +++G+ ++I+ P+GA
Sbjct: 75 KVIEDTH--VINGKQVEIKRT-IPKGA 98
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGRE 260
T KIF+GNL+ +TT DLR FE++G VV+ ++V + YGF+ +
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
Query: 261 AIQN 272
A+QN
Sbjct: 69 ALQN 72
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHL-DATGDVNDAIK 507
KIFVGNLT +T A ++R F++FG VV+ ++V + YGF+ D V
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 508 ELNGIDGRRT 537
IDGR T
Sbjct: 73 SKPIIDGRTT 82
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+F+ L+ T + DL +F ++GTVV D++R+ Y F+ EN++ +A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 276 NGELVHGQAIKIEAAKS 326
+ L+ + I ++ ++S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 459
+FV L T ++ +F +FGTVV D++R++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDF 278
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 266
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V E +
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Query: 267 QNLN 278
N
Sbjct: 168 SKGN 171
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
KIFVG + E+++ F K+G VVE ++R+ +GFV D+ V++ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 511 LNGID 525
N ID
Sbjct: 170 GNMID 174
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 257
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 258 EAIQNLNGELVHGQAIKIEAAKSPEGA 338
+ I++ + +++G+ ++I+ P+GA
Sbjct: 75 KVIEDTH--VINGKQVEIKRT-IPKGA 98
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV-----HMENEQVGREAIQ--NLN 278
+++G+L+ +TTE+DL LF +YG + + + GF H+E +EA+Q NLN
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLN 79
Query: 279 G 281
G
Sbjct: 80 G 80
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGIDGRRT 537
++VG+LT +T ++ ELF ++G + + + GF + V +A+ + G
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFI-YYRHVEEAVAAKEALQGANL 78
Query: 538 AHEGXSCRRV 567
C+R+
Sbjct: 79 NGTNELCKRI 88
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 257
G+G ++++GNLS + L LF + G VVE ++ + +GFV ++ Q +
Sbjct: 201 GSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 258 EAIQNLNGELVHGQAIKIEAAKS 326
AI++L+G + G+ I++ A++
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEA 282
Score = 41.1 bits (92), Expect = 6e-04
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Frame = +3
Query: 69 FVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYG 224
F P + + K+F+GNL A L LFE G V +++ R +G
Sbjct: 76 FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFG 135
Query: 225 FVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSP 329
FV M + A Q NG + G+ +++ A P
Sbjct: 136 FVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPP 170
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
+++VGNL+ + LF + G VVE ++ + +GFV D++ +V +AIK
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 511 LNG--IDGRR 534
L+G +DGR+
Sbjct: 265 LDGADLDGRQ 274
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVGNL + ++ +LF+ G V +++ R +GFV + + +V A ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 511 LNG--IDGR 531
NG +DGR
Sbjct: 152 FNGYELDGR 160
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+++ NL++ TT+ DL+ F +YG + ++++ +GFV+ EN A+++LN
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 279 G 281
G
Sbjct: 91 G 91
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 516
++V NL + T +++ F ++G + ++++ +GFV+ + D A++ LN
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 517 G 519
G
Sbjct: 91 G 91
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 516
++V NL +++E+F FGTV ++R+ GFV + +A+ +L+
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 193
Query: 517 G 519
G
Sbjct: 194 G 194
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+++ NL + T+ADL+ LF ++G + ++ R +GFV+ E + AI+ +N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 279 GELVHGQAIKIEAAK 323
G +V + + + A+
Sbjct: 181 GVVVDEKELHVGRAQ 195
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 278
+++ NL D L LF ++GT+ C ++ + GFV + +A+ +N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 279 GELVHGQAIKIEAAKSPE 332
G++V + I + A+ E
Sbjct: 285 GKMVGNKPIYVSLAQCKE 302
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
++V NL D ++ ELF +FGT+ C ++ + GFV + + + A+ ++N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 517 G 519
G
Sbjct: 285 G 285
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
++V NL + +++ LF +FG + ++ R +GFV+ + AI+++N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 517 G-IDGRRTAHEGXSCRR 564
G + + H G + R+
Sbjct: 181 GVVVDEKELHVGRAQRK 197
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGI 522
I+VGNL R EV +LF K+G +V+ D+ Y FV + D +DAI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 523 D 525
D
Sbjct: 69 D 69
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 284
I++GNL + ++ LF KYG +V+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 285 LVHGQAIKIEAA 320
G +++E A
Sbjct: 69 DFDGCRLRVEIA 80
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +3
Query: 96 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGRE 260
M G + I++GNL E ++ +F KYG +V+ ++ Y FV E+ + +
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 261 AIQNLNGELVHGQAIKIEAAKSPEG 335
AI+ +G + G +++E A G
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRG 85
Score = 38.7 bits (86), Expect = 0.003
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNG- 519
I+VGNL R E+ ++F K+G +V+ ++ Y FV + + D DAIK +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 520 -IDGRRTAHEGXSCRRVVSGSGR 585
+DG R E R S S R
Sbjct: 69 NLDGCRLRVELAHGGRGQSSSDR 91
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Frame = +3
Query: 99 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 254
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 255 REAIQNLNGELVHGQAIKIEAAKSPE 332
+ + EL +G+ ++++ A E
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKE 187
Score = 33.9 bits (74), Expect = 0.094
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+F+G ++ T ++E F FG V+E I+ R +GFV I E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 511 LNGIDGR 531
+ IDGR
Sbjct: 67 KHNIDGR 73
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 266
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 267 -QNLNGELVHGQ 299
N++G LV +
Sbjct: 67 KHNIDGRLVEAK 78
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI-- 504
KIFVG L + + F++FGT + ++ R +GF+ D+ V +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 505 --KELNG 519
ELNG
Sbjct: 169 TFHELNG 175
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Frame = +3
Query: 99 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 254
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 255 REAIQNLNGELVHGQAIKIEAAKSPE 332
+ + EL +G+ ++++ A E
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKE 187
Score = 33.9 bits (74), Expect = 0.094
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+F+G ++ T ++E F FG V+E I+ R +GFV I E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 511 LNGIDGR 531
+ IDGR
Sbjct: 67 KHNIDGR 73
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 266
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 267 -QNLNGELVHGQ 299
N++G LV +
Sbjct: 67 KHNIDGRLVEAK 78
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI-- 504
KIFVG L + + F++FGT + ++ R +GF+ D+ V +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 505 --KELNG 519
ELNG
Sbjct: 169 TFHELNG 175
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKELNGID 525
+++VGNL + E+ + F+ FG + + R Y F+ + + D DAI+E++G +
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKN 62
Query: 526 GRR 534
G R
Sbjct: 63 GWR 65
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K+F+GNLS T L F + G VV +V R YGFV ++ A+++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 273 LNGELVHGQAIKIEAAK 323
L+G + G+AI++ A+
Sbjct: 238 LDGFELEGRAIRVNLAQ 254
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVGNL+ + + F++ G VV +V R YGFV + ++ A++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 511 LNGID 525
L+G +
Sbjct: 238 LDGFE 242
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ--- 248
G T KIF+G L TEA+ + F+++GT+ + ++ R +GF+ ++E+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Query: 249 -VGREAIQNLNGELV 290
V + LNG++V
Sbjct: 178 MVLHKTFHELNGKMV 192
Score = 34.3 bits (75), Expect = 0.071
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 272
K+FIG +S T E L+ F KYG +VE I+R+ +GF+ + V I
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-- 73
Query: 273 LNGELVHGQAIKIEAA 320
++ ++ G+ ++ + A
Sbjct: 74 MDKHIIDGRTVEAKKA 89
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV----ND 498
KIFVG L E + F +FGT+ + ++ R +GF+ D+ V +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 499 AIKELNG 519
ELNG
Sbjct: 183 TFHELNG 189
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
K+F+G ++ T ++E F K+G +VE I+R+ +GF+ I +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 511 LNGIDGR 531
+ IDGR
Sbjct: 76 KHIIDGR 82
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGRE 260
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV +++
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 261 AIQNLNG 281
AI LNG
Sbjct: 267 AIDGLNG 273
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+ T K+F+G++ TE ++RP FE++G V+E ++++
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 33.5 bits (73), Expect = 0.12
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 513
K+FVG+L + EV E+F +FG V + ++R+ GFV + AI L
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 514 NGIDGRRTAHEGXSCR-----RVVSGSGRAWATPSSLXRCGPR 627
NG R ++ R R G R A P L GPR
Sbjct: 272 NGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLG-SGPR 313
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG++ E+R F++ G V+E ++++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGRE 260
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV +++
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 261 AIQNLNG 281
AI LNG
Sbjct: 267 AIDGLNG 273
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
+ T K+F+G++ TE ++RP FE++G V+E ++++
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Score = 33.5 bits (73), Expect = 0.12
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 513
K+FVG+L + EV E+F +FG V + ++R+ GFV + AI L
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 514 NGIDGRRTAHEGXSCR-----RVVSGSGRAWATPSSLXRCGPR 627
NG R ++ R R G R A P L GPR
Sbjct: 272 NGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLG-SGPR 313
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+FVG++ E+R F++ G V+E ++++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
++FV L+ T +R+LF FG + E ++R+ +GF+ D+ D A+K
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 511 LNG--IDGR 531
L+G +DGR
Sbjct: 68 LDGKIVDGR 76
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVG L+ T +++ F FG V E ++ R +GFV N+AIKE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 511 LNG--IDGRR 534
++G ++GR+
Sbjct: 96 MDGKELNGRQ 105
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVG L+ T +++ F FG V E ++ R +GFV N+AIKE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 511 LNG--IDGRR 534
++G ++GR+
Sbjct: 96 MDGKELNGRQ 105
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
+F+GN+ TE LR + + G VV +V + YGF ++E+ A +NL
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 276 NGELVHGQAIKIEAAKSPEG 335
++G+ ++++ A++ +G
Sbjct: 71 QSYEINGRQLRVDFAENDKG 90
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
KIF+G L+ +T +R FE++G +VE ++ + YGFV + + A QN
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 273 LN 278
+N
Sbjct: 83 MN 84
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
KIFVG L +T+ +R F++FG +VE ++ + YGFV A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 511 LNG-IDGRR 534
+N IDGRR
Sbjct: 83 MNPVIDGRR 91
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 266
T KIF+G LS TTE + + FE++G + ++ R +GFV ++E E +
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED-SVEVV 177
Query: 267 QNLNGELVHGQAIKIEAAKSPEGAVDANH*N 359
N + + ++++ A EG + +N+ N
Sbjct: 178 MQSNFHELSDKRVEVKRAIPKEG-IQSNNGN 207
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 245
+K+F+G ++ +T+E L+ F +YG V+E + R +GFV N+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV 492
KIFVG L+ T E + F++FG + ++ R +GFV D+ V
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREA 263
+G IFI NL L F +G ++ C + + YGFV + ++ + A
Sbjct: 130 SGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGA 189
Query: 264 IQNLNGELVHGQAIKI 311
I LNG L++ + + +
Sbjct: 190 IDKLNGMLLNDKQVYV 205
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+++ NLS+ ++ +L +F ++G C I+R+ +GFV+ EN A+ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 279 GE 284
G+
Sbjct: 286 GK 287
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+++ NL + T+ LR F +GT+ C ++R+ GFV + AI +N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 279 GELVHGQAIKIEAAKSPE 332
G+++ + + + A+ E
Sbjct: 389 GKMIVTKPLYVALAQRKE 406
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 516
++V NL++ E+ ++F +FG C I+R+ +GFV+ + + D A+ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 517 G 519
G
Sbjct: 286 G 286
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 516
++V NL + ++RE F FGT+ C ++R+ GFV + AI E+N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 517 G 519
G
Sbjct: 389 G 389
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELN 516
IF+ NL + E F FG ++ C + + YGFV D AI +LN
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 517 GI 522
G+
Sbjct: 195 GM 196
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNGID 525
+++VGNL + E+ + F+ FG V + R Y F+ + D DAI+ L+G +
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKN 62
Query: 526 GRRTAHEGXSCRRVVSGSG 582
G R R G G
Sbjct: 63 GWRVEQSHNRGERGGGGRG 81
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 275
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 276 NGE 284
NG+
Sbjct: 167 NGK 169
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 453
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 275
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 276 NGE 284
NG+
Sbjct: 167 NGK 169
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 453
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
+FI N+ + + +L F+ +G V+ + + +GFV +++ + AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 276 NGELVHGQAIKIEAAK-SPEGAVDAN 350
NG + G+ +K++ + S G +N
Sbjct: 411 NGRHLGGKKLKVQLKRDSNNGQPSSN 436
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +1
Query: 364 VGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAIKELNG 519
V NL++ TR P++ ELF FG V + + R +GFV+ + D AI +LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 126 IGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVGREAIQNLNG 281
+ NLS+ T E DL LF +G V + + R +GFV+ + + + AI LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 282 ELVHGQAIKIEAA 320
+++E A
Sbjct: 277 YGYDNLILRVEWA 289
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
+F+ +S +TE L F +YG V++ D++ + + +V +++ +A+ L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 276 NGELVHGQAIKIEAAKS 326
N +LV G+ + ++ K+
Sbjct: 83 NAQLVDGRVVILDTTKA 99
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Frame = +3
Query: 99 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 251
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 27 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 86
Query: 252 GREAIQNLNGELVHGQAIKIEAAKSPEGAVD 344
+ +Q EL +G+ ++++ A + A++
Sbjct: 87 VDKVLQKTFHEL-NGKMVEVKLAVPKDMALN 116
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK- 507
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 508 ---ELNG 519
ELNG
Sbjct: 94 TFHELNG 100
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Frame = +3
Query: 99 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 251
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 252 GREAIQNLNGELVHGQAIKIEAAKSPEGAVD 344
+ +Q EL +G+ ++++ A + A++
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLAVPKDMALN 189
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK- 507
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 508 ---ELNG 519
ELNG
Sbjct: 167 TFHELNG 173
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Frame = +3
Query: 99 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 251
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 252 GREAIQNLNGELVHGQAIKIEAAKSPEGAVD 344
+ +Q EL +G+ ++++ A + A++
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLAVPKDMALN 189
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK- 507
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 508 ---ELNG 519
ELNG
Sbjct: 167 TFHELNG 173
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYG--FVHMENEQVGREAIQNL 275
++ N+ +T D+R LFEKYG+V++ ++ RN G F+ M + + A+++L
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 154
Query: 276 NGELVHGQAIKIEAAKS 326
G+ +K++ AK+
Sbjct: 155 ESCEYEGRRLKVDYAKT 171
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 276 NGELVHGQAIKIE 314
NG+ G+ I ++
Sbjct: 139 NGKFFDGRFILVK 151
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FV +D ++++F +FG V I+ N YG+V ++ D A++ +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 514 NG--IDGR 531
NG DGR
Sbjct: 139 NGKFFDGR 146
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVG L +T E+R F++FG ++E I+ + YGFV + A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 511 LNG-IDGRR 534
N IDGR+
Sbjct: 78 PNPVIDGRK 86
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 273 LN 278
N
Sbjct: 78 PN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVG L +T E+R F++FG ++E I+ + YGFV + A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 511 LNG-IDGRR 534
N IDGR+
Sbjct: 78 PNPVIDGRK 86
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 273 LN 278
N
Sbjct: 78 PN 79
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
KIF+G L+ +TT A+ F KYG + + I+ R +GFV + V + IQ
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 273 LNGELVHGQAIKIEAAKSPEGAVDAN 350
+ ++ G+ ++I+ P G++ +N
Sbjct: 102 -DNHIIIGKQVEIKRT-IPRGSMSSN 125
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 459
KIFVG + E +E F +FG + E I+R++
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDH 165
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
KIFVG L +T + E + F K+G + + I+ R +GFV + V+ I++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 511 LNGIDGRR 534
+ I G++
Sbjct: 103 NHIIIGKQ 110
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.1 bits (82), Expect = 0.010
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTV--------VECDIVRNYGFVHMENEQVGR 257
G K+++GNL +E LR +FE +G V E + +GF+ + +
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSK 320
Query: 258 EAIQNLNGEL-VHGQAIKIEAAKSPEGAVDA 347
A LNG+L + G+ IK+ + G D+
Sbjct: 321 AAQIALNGKLEIAGRTIKVSSVSDHIGTQDS 351
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +3
Query: 96 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 251
+P G+ ++FIG L E DLR L E+ G + E ++++ Y FV + + V
Sbjct: 111 LPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 169
Query: 252 GREAIQNLNGELVHGQAIKIEAAKS 326
++AI+ L+ + G+ I+ +++
Sbjct: 170 AQKAIEELHSKEFKGKTIRCSLSET 194
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQNLNG 281
+++ N+ + T+ L+ LF+++G V + R++GFVH +A+++
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
Query: 282 ELVHGQAIKIEAAK 323
V+GQ +++ AK
Sbjct: 354 YEVNGQPLEVVLAK 367
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQNL 275
+++G L + +E L LF + G VV ++ +NYGF+ +E+ AI+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 276 NGELVHGQAIKIEAAKSPEGAVD 344
N +HG+ I++ A + ++D
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLD 109
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV---------RNYGFVHMENEQVGREAIQN 272
+FIGNL E L F +G + + R +GF+ ++ + AI++
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 273 LNGELVHGQAIKIEAA 320
+ G+ + + I + A
Sbjct: 174 MTGQYLSNRQITVSYA 189
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDATGDVNDAIKEL 513
++VG L + + ELF + G VV ++ +NYGF+ + D + AIK L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 514 NGI 522
N I
Sbjct: 87 NMI 89
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 269
IF+ TT+ +L+ FE YG + EC +V + YGFV + + REA++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 36.7 bits (81), Expect = 0.013
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVG L +T E+R F +FG ++E I+ + YGFV + A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 511 LNG-IDGRR 534
N IDGR+
Sbjct: 78 PNPVIDGRK 86
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Frame = +3
Query: 102 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 254
G TF K+F+G L+ +T LR FE+YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 255 REA 263
R A
Sbjct: 79 RRA 81
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
KIFVG L+ T ++E F FG +V+ +V R +GFV D+ N+A++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 511 LNG--IDGR 531
+ +DGR
Sbjct: 97 MQNKELDGR 105
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 245
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 246 QVGREAIQNLNGELV 290
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI-- 504
KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+ +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 505 --KELNG 519
ELNG
Sbjct: 171 TFHELNG 177
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 245
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 246 QVGREAIQNLNGELV 290
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI-- 504
KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+ +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 505 --KELNG 519
ELNG
Sbjct: 171 TFHELNG 177
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 245
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 246 QVGREAIQNLNGELV 290
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI-- 504
KIFVG L E + F +FGT+ + ++ R +GF+ D+ V+ +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 505 --KELNG 519
ELNG
Sbjct: 171 TFHELNG 177
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 456
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 35.9 bits (79), Expect = 0.023
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDAT-GDVNDAIKEL 513
K++VGNL T+ +R F KFGT+V ++ RN F L T G+ DA
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSF 272
Query: 514 NG--IDGRR 534
NG +GRR
Sbjct: 273 NGTQYEGRR 281
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHME-NEQVGREAIQNL 275
K+++GNL T LR F K+GT+V ++ RN F + R+A +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSF 272
Query: 276 NGELVHGQAI 305
NG G+ I
Sbjct: 273 NGTQYEGRRI 282
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
+++V N+ ++ ++FQ FGTV+ ++ RN G+V + + AI
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 511 LNGID 525
L+G +
Sbjct: 169 LDGTE 173
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 276 NGELVHGQAIKIE-AAKSP 329
NG G+ + + A KSP
Sbjct: 542 NGYRFEGRTLAVRIAGKSP 560
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 276 NGELVHGQAIKIE-AAKSP 329
NG G+ + + A KSP
Sbjct: 542 NGYRFEGRTLAVRIAGKSP 560
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 111 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 287
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 127
Query: 288 VHGQAIKIEAAKSPEG 335
+ + + +E A G
Sbjct: 128 LLDKVVSVEYALREAG 143
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 269
F+IF+G+L +E DL+ +F G V E I++N F+ + + A++
Sbjct: 214 FEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVK 273
Query: 270 NLNGELVHGQAIKIEAAK 323
L +++G+ + A++
Sbjct: 274 ELKSPMINGKKCGVTASQ 291
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
IF+ L TT +L+ FE YG + EC +V + +GFV + + R A++N
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 35.5 bits (78), Expect = 0.031
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNGID 525
+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L+ +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKN 62
Query: 526 GRRT--AHEGXSCRRVVSGSGRAWATPSSLXRCGPRG 630
G R +H+ R G R S CG G
Sbjct: 63 GWRVELSHKDKG-GRGGGGGRRGGIEDSKCYECGELG 98
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 35.5 bits (78), Expect = 0.031
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNGID 525
+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L+ +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKN 62
Query: 526 GRRT--AHEGXSCRRVVSGSGRAWATPSSLXRCGPRG 630
G R +H+ R G R S CG G
Sbjct: 63 GWRVELSHKDKG-GRGGGGGRRGGIEDSKCYECGELG 98
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 276 NGEL 287
NG++
Sbjct: 120 NGKV 123
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 513
+FV +D ++++F +FG V I+ N YG+V ++ D A++ +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 514 NG 519
NG
Sbjct: 120 NG 121
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 34.7 bits (76), Expect = 0.054
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Frame = +3
Query: 96 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 251
+P G+ ++++G + TE DL+ G V E I+R Y FV ++ +
Sbjct: 87 LPPHGS-EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
Query: 252 GREAIQNLNGELVHGQAIKIEAAKS 326
EAI LN G+ IK ++
Sbjct: 146 AAEAIDTLNNTDFRGKRIKCSTTQA 170
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 275
++I NL T+ L+ LFE +G +++ I YGFVH A++N
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 276 NGELVHGQAIKIEAAK 323
+ G + AK
Sbjct: 330 ERYEIDGHMLDCTLAK 345
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 34.7 bits (76), Expect = 0.054
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Frame = +3
Query: 90 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYG-TVVECDIV--------RNYGFVHMEN 242
S PG K+++ NL+ K LR LF V +V YGFV
Sbjct: 186 SPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFAT 245
Query: 243 EQVGREAIQNLNGELVHGQAIKIE-----AAKSPEG-AVDANH 353
+ AI LNG+ + G+ I ++ A++S +G +V+AN+
Sbjct: 246 REEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANN 288
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 275
K+F+ NL + D+ LF + GTV +I+ R + FV M + + + AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 276 NGELVHGQAIKIEAAK 323
+ V G+ I + A+
Sbjct: 156 DTFQVSGRIISVSFAR 171
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFG-TVVECDIV--------RNYGFVHLDATGDVNDAIK 507
K++V NL K R+ +RELF V +V YGFV + +AI
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 508 ELNG 519
+LNG
Sbjct: 255 KLNG 258
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 34.7 bits (76), Expect = 0.054
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Frame = +3
Query: 102 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 254
G TF K+F+G L+ +T LR F++YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 255 REA 263
R A
Sbjct: 79 RRA 81
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.3 bits (75), Expect = 0.071
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGREAIQN---L 275
I++GN+ T +++ F+ GTV I+ + GF ++E +V EA+QN L
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEV--EAVQNSLIL 162
Query: 276 NGELVHGQAIKIEAAKS 326
N +HG+ IK+ A ++
Sbjct: 163 NESELHGRQIKVSAKRT 179
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 33.9 bits (74), Expect = 0.094
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-----------RNYGFVHMENEQVGR 257
T +++GNLS K E L F ++G + I+ RN GFV N G+
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 258 EAIQNLNGELVHGQAIKIEAAKS 326
A + G +V+ +KI K+
Sbjct: 238 AAKDEMQGIIVYEYELKIGWGKA 260
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.9 bits (74), Expect = 0.094
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 266
T KIF+G L T+ + R FE YG V + I+ R +GFV ++E +
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Query: 267 QNLNGELVHGQAIKIEAA 320
+L G+ ++++ A
Sbjct: 169 HKTFHDL-SGKQVEVKRA 185
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
K+F+G +S +T E LR F YG V + ++R+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD 40
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVE 200
K+++ +S TE D+R +FEKYG V E
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTE 138
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVEC-------DIVRNYGFVHMENEQVGREAIQNL 275
K+++ L+ +TT+ ++ +F +YG + + I R Y FV +++ AI+ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 276 NG 281
NG
Sbjct: 268 NG 269
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVEC-------DIVRNYGFVHLDATGDVNDAIKEL 513
K++V L +T EV E+F ++G + + I R Y FV AIK L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 514 NGI 522
NG+
Sbjct: 268 NGL 270
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Frame = +3
Query: 96 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 251
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 252 GREA 263
++A
Sbjct: 61 AQKA 64
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV-HLDATGDVNDAIK 507
K+FVG L +T +R F++FG +VE ++ + YGFV D +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 508 ELNGIDGRR 534
IDGRR
Sbjct: 68 PAPVIDGRR 76
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Frame = +3
Query: 96 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 251
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 252 GREA 263
++A
Sbjct: 61 AQKA 64
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV-HLDATGDVNDAIK 507
K+FVG L +T +R F++FG +VE ++ + YGFV D +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 508 ELNGIDGRR 534
IDGRR
Sbjct: 68 PAPVIDGRR 76
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 275
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 276 NG 281
NG
Sbjct: 170 NG 171
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 453
K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 257
G +FI N+ + + +L F+ +G V+ + + +GF+ +++ +
Sbjct: 335 GPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQ 394
Query: 258 EAIQNLNGELVHGQAIKIE 314
AI +NG + G+ +K++
Sbjct: 395 NAINTMNGCQLSGKKLKVQ 413
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 275
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 276 NG 281
NG
Sbjct: 161 NG 162
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 453
K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 257
G +FI N+ + + +L F+ +G V+ + + +GF+ +++ +
Sbjct: 326 GPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQ 385
Query: 258 EAIQNLNGELVHGQAIKIE 314
AI +NG + G+ +K++
Sbjct: 386 NAINTMNGCQLSGKKLKVQ 404
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDA 480
KIFVGNL + PE E F++FG + +++ + V +A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 278
+F+ NLS +T D+ + G VV ++ N+ FV + ++ ++N N
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLENKN 188
Query: 279 GELVHGQAI 305
GE HG I
Sbjct: 189 GEYFHGHKI 197
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 273 LNGELVHGQAIKIEAAKSP 329
+++ A A+ P
Sbjct: 165 PKKRILNRTATCQLASMGP 183
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 273 LNGELVHGQAIKIEAAKSP 329
+++ A A+ P
Sbjct: 165 PKKRILNRTATCQLASMGP 183
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 120 IFIGNLS-DKTTEADLRPLFEKYGTVVECDIVRN---YGFVHMENEQVGREAIQNLNGEL 287
+ + NL+ D E L LF YG +V ++RN + V M + A+ L G +
Sbjct: 247 VLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAM 306
Query: 288 VHGQAIKIEAAKSP 329
+ G+ +++ +K P
Sbjct: 307 LFGKRLEVNFSKHP 320
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 33.1 bits (72), Expect = 0.16
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Frame = +3
Query: 105 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGRE 260
+G + I NL DLR FE++G + + + RNY GFV + E
Sbjct: 44 SGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAE 103
Query: 261 AIQNLNGELVHGQAIKIEAAK 323
A++ +N +++ G+ I I A+
Sbjct: 104 AMKRMNHKVIGGREIAIVFAE 124
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIKEL 513
+ + NL R ++R+ F++FG + + + RNY GFV D +A+K +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 514 NG--IDGRRTA 540
N I GR A
Sbjct: 109 NHKVIGGREIA 119
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ----VG 254
T KIF+G L T + R FE YG V + I+ R +GFV ++E V
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Query: 255 REAIQNLNGELV 290
+ +LNG+ V
Sbjct: 169 HKTFHDLNGKQV 180
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+F+G ++ T +RE F FG V++ ++ R +GFV ++ +++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 511 LNGIDGRRTAHEGXSCRRVVSGSGRA 588
+ ID R + R S +GR+
Sbjct: 67 KHHIDNRDVDVKRAMSREEQSPAGRS 92
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 278
+ + NLS T A ++ F VV +V N YGFV + +A++ N
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219
Query: 279 GELVHGQAIKI-EAAKSPEGAVDA 347
GE +H I + + +SP A +A
Sbjct: 220 GEYLHNHKILLMKGHESPGFAEEA 243
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +3
Query: 120 IFIG-NLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV 290
++IG S K +A LR +F +G + + + R+Y FV N +A ++L G+L
Sbjct: 153 LYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLF 212
Query: 291 HGQAIKIEAAKS 326
+ I AKS
Sbjct: 213 GNPRVHICFAKS 224
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFVHME--NEQVGREAIQNLNGELV 290
+ +GN+S + +L+ LFE++G + +N GF+ + + + + A + L +L+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLL 278
Query: 291 HGQAIKIEAAKSPE 332
G + I + S E
Sbjct: 279 RGTKLDIRYSISKE 292
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 32.3 bits (70), Expect = 0.29
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGT--VVECD--IVRNYGFVHMENEQVGREAIQNLNGEL 287
+ + +L D + LF +YG V C +RN FV +NE +A + LNG
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 288 VHGQAIKIEAAKSP 329
G+ ++++ A P
Sbjct: 90 FLGKVLQVQRANKP 103
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 93 KMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 221
+ P +IF+ + +E+D R FE+YG + + + ++Y
Sbjct: 84 RQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
KIFVG L + ++R+ F +FG + + I R +GFV G + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 511 LNGIDGRRTA 540
+ I G+ A
Sbjct: 301 SHEICGQEVA 310
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
KIF+G L + + DLR F ++G + + I R +GFV V + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVA-DRVAR 299
Query: 273 LNGELVHGQAIKIEAA 320
+ E+ GQ + I++A
Sbjct: 300 RSHEIC-GQEVAIDSA 314
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENE 245
F ++GNL T E DL+ F ++G V+ ++ ++ F ++ E
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLIDYE 51
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 361 FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 477
+VGNL T +++ F +FG V+ ++ ++ F +D
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLID 49
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.5 bits (68), Expect = 0.50
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFE-------KYGTVVECDIVRNYGFVHMENEQVGREAI 266
G +++IGNL+ TTE D+R LF + G E + Y V + + V
Sbjct: 260 GYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFK-DSVSVAIA 318
Query: 267 QNLNGELVHGQAIKIEAAKSPEGAVD--ANH*NIRG*FNGQDARA 395
L+ +++ G+ +KI A A D N G +N +D A
Sbjct: 319 LKLDQQVICGRPVKICCALKDRPATDHTPGETNNAGSYNMEDTYA 363
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.5 bits (68), Expect = 0.50
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
IF+G+LS ++ L F EKY +V +V + YGFV +E +A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 273 LNGELVHGQAIKIEAA 320
+NG +A++I A
Sbjct: 259 MNGVKCSSRAMRIGPA 274
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV- 290
+++G L+ + E D+R F +G + I+ + FV + + +A Q L+ LV
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVI 289
Query: 291 HGQAIKI 311
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 275
++IG + E ++ F ++GTV + RN +GF+ E+ +V A +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 276 NGELVHGQAIKIEAAKSPE 332
N L+ +K+ + PE
Sbjct: 122 NDYLLMEHMLKVHVIE-PE 139
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHL-DATGDVNDAIK 507
K+FVG L +T +++ F++FG ++E ++ + YGFV +A + +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 508 ELNGIDGRR 534
IDGRR
Sbjct: 74 ATPVIDGRR 82
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREA 263
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHL-DATGDVNDAIK 507
K+FVG L +T +++ F++FG ++E ++ + YGFV +A + +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 508 ELNGIDGRR 534
IDGRR
Sbjct: 74 ATPVIDGRR 82
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREA 263
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHL-DATGDVNDAIK 507
K+FVG L +T +++ F++FG ++E ++ + YGFV +A + +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 508 ELNGIDGRR 534
IDGRR
Sbjct: 74 ATPVIDGRR 82
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREA 263
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 30.7 bits (66), Expect = 0.88
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
KI+VG L TR + F++FG ++ ++V + YGFV A K+
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 511 LN-GIDGRRT 537
N I+GR T
Sbjct: 74 PNPTIEGRIT 83
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 30.7 bits (66), Expect = 0.88
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 275
+ + NL + DLR FE++G V + + R+Y GFV + +A ++
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 276 NGELVHGQAIKIEAAKSPEGAVDANH*NIRG*FNGQDARARSPRAVS 416
+G L+ G+ + + A+ RG +D R PR S
Sbjct: 98 DGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYS 144
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 269
+++F G+L ++ + L F ++ T ++R+ YGFV N A++
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 270 NLNGELVHGQAIKIEAAKSPE 332
+NG+ V + IK+ + E
Sbjct: 197 EMNGKYVGNRPIKLRKSSWKE 217
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 510
++F G+L ++ + + F +F T ++R+ YGFV D+ A+KE
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 511 LNG 519
+NG
Sbjct: 198 MNG 200
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGEL-V 290
+++G L+ + E D+R F +G + I+ + FV + +A + L+ L V
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVV 289
Query: 291 HGQAIKI 311
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVG--REAIQNLN 278
+F+GN+ T +++ F+ GTV I+ + GF ++E +V +EA+Q LN
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 279 GELVHGQAIKI 311
+HG+ +K+
Sbjct: 153 ESELHGRQLKV 163
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 513
+FV L+ +T + +R F +FG V + +V + +GFV AT + D+ K +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY-AT--LEDSAKGI 114
Query: 514 NGIDGR 531
G+DG+
Sbjct: 115 AGMDGK 120
>At2g11090.1 68415.m01187 expressed protein
Length = 151
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = -1
Query: 638 TSGPRGPQRXRLLGVAHARPLPDTTRRQLXPSWAVRRP--SIPFNSLIASFTSPVASKCT 465
T+ PRG H+ P TT W R S P++S+I S TSP T
Sbjct: 19 TTRPRGRVEDLSTSRHHSTPWSSTT-------WTTTRSHYSTPWSSIITSTTSPSLDHTT 71
Query: 464 KP*LR-----TISHSTTVPN 420
+P R ++ HSTT P+
Sbjct: 72 QPRGRVPSSPSLDHSTTKPS 91
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+FVG ++ +T A F KFG VV+ I+ R +GFV + ++E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 511 LNGIDGRR 534
+ ID R+
Sbjct: 127 DHVIDDRK 134
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Frame = +3
Query: 75 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV 230
H + S M G K+F+G +S +TT F K+G VV+ I+ R +GFV
Sbjct: 55 HRHSSSSMSSPG--KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFV 112
Query: 231 HMENEQVGREAIQ 269
+ V + ++
Sbjct: 113 TFADSAVAEKVLE 125
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +3
Query: 111 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 245
T KIF+G L E +L+ F YG ++E I+ R +GFV + E
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 458 TASCIWTRRAM*TTLSKS*TVLMVDGQPMRVXVVDESC-PAAAGHGRP 598
TA +++RR K + +DG+PM++ +V + AAA GRP
Sbjct: 128 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRP 175
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 458 TASCIWTRRAM*TTLSKS*TVLMVDGQPMRVXVVDESC-PAAAGHGRP 598
TA +++RR K + +DG+PM++ +V + AAA GRP
Sbjct: 64 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRP 111
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 458 TASCIWTRRAM*TTLSKS*TVLMVDGQPMRVXVVDESC-PAAAGHGRP 598
TA +++RR K + +DG+PM++ +V + AAA GRP
Sbjct: 130 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRP 177
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 218
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 287
+FIGNL + E +LR L + I+R F+ E+ NL G +
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQGAV 294
Query: 288 VHGQ---AIKIEAAKSPEG 335
+ ++I+ +K+P G
Sbjct: 295 IPSSGSIGMRIQYSKNPYG 313
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 212
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 212
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 236
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 42 FNLCYILLFFVHSNP*SKMPGTG-TFKIF 125
F LCYI+LF +H++ +KM G F +F
Sbjct: 88 FQLCYIILFIMHTDKKNKMKMLGLLFVVF 116
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 275
+ + NL + DLR FE++G V + + R+Y GF+ + EA +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 276 NGELVHGQAIKIEAAK 323
+G L+ G+ + + A+
Sbjct: 99 DGYLLLGRELTVVFAE 114
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Frame = +1
Query: 355 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 510
K+F+G L+ +++ F FG V E I R +GFV GD A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 511 LNG 519
++G
Sbjct: 102 MDG 104
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +3
Query: 108 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHME--NEQVGREA 263
G +F+G L TT+A++ + +YG V E ++ G+ +E +
Sbjct: 200 GNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAAC 259
Query: 264 IQNLNGELVHGQAIKIEAAKSPE 332
+ +NG + +G+A + A SPE
Sbjct: 260 KEGMNGFIFNGKAC-VVAFASPE 281
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVE---CDIVRNYGFVHMENEQVGREAIQNLNG 281
+FI NL +TT L+ LFE+Y E D FV E++ A+Q L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 120 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENE 245
+F+G L T+ L+ +F +YG +V I + GFV +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +3
Query: 114 FKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAI 266
+ IF+G+L+ T+ L F Y +V +V + YGFV +E A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 267 QNLNGELVHGQAIKIEAAKSPEG 335
+NG + ++I A S +G
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKG 237
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 513
++V L+ + ++ + F K G V + +V R +GF+ + + GD N I+ L
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 514 N 516
+
Sbjct: 107 D 107
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = +1
Query: 358 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 513
++V L+ + ++ + F K G V + +V R +GF+ + + GD N I+ L
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 514 N 516
+
Sbjct: 137 D 137
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 102 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 200
G G F +F+G+L TT+A+L KYG V E
Sbjct: 231 GGGAF-LFVGDLHWWTTDAELEAELCKYGAVKE 262
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +3
Query: 117 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 272
K+F+G L+ T + + F KYG ++E I+ + YGFV ++ + A ++
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 219 YGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKS 326
YGFV + + A++ NGE +H I + AK+
Sbjct: 724 YGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKT 759
>At1g53070.1 68414.m06009 legume lectin family protein contains Pfam
domain, PF00139: Legume lectins beta domain
Length = 272
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -1
Query: 575 PDTTRRQLXPSWAVRRPSIPFNSLIASFTSPVASKCTKP*LRTISHSTTVPNF*NSSRTS 396
PDT + + A+ R +IPF+ A FT+P+ K L S T ++
Sbjct: 48 PDTDGKSRSGAIALTRDNIPFSHGRAIFTTPITFKPNASALYPFKTSFTFSITPKTNPNQ 107
Query: 395 GARVLSVKLPTN 360
G + + +P+N
Sbjct: 108 GHGLAFIVVPSN 119
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 440 HSTTVPNF*NSSRTSGARVLSVKLPTNILVVGVDG 336
H T+ N +++TSG S+K P+ G++G
Sbjct: 1270 HKVTILNLPETAQTSGLHEASIKAPSVTFGTGIEG 1304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,747,895
Number of Sequences: 28952
Number of extensions: 272533
Number of successful extensions: 1314
Number of sequences better than 10.0: 180
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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