Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0641
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   0.91 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   1.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   1.6  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    24   6.4  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   6.4  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   8.5  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 231  KYITKIDNLCLIFIEYMYIFN 293
            KY+T     CL+  EYM+I+N
Sbjct: 1210 KYLTSYFESCLLSTEYMHIYN 1230


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 188 ERTCIFSFSFFEMSNLTFT 132
           E  C+F++SF ++S+LT T
Sbjct: 422 ENPCLFNYSFSDLSSLTIT 440


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 220 IVFYFFAQIKLKGRVFFRFLFSKCQI*RLQFSKVTVTDFFFKYDVVV 80
           ++F+FF    L     F FLF   QI  + FS   +  F F + + V
Sbjct: 117 LLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCV 163


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 143 NLTFRKKKTKKYTSFQFYLCKKIKYDFYPEVYYE 244
           N  + K  T +YT +Q    KKI++  + + Y++
Sbjct: 378 NDLYAKDVTLRYTDYQSSRLKKIRHVSFADKYFD 411


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 95  IRCSSVDGIQHAGRSMLRRFGSAYEYT 15
           I C  VD      RS+L+RFGS  + T
Sbjct: 76  IECLLVDSKITKTRSLLKRFGSCLDET 102


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 129  NCKRQI*HFEKRKRKNTRPFNFICAK 206
            N +R+I HFE R+R  T  +  I  K
Sbjct: 1060 NTQRKIAHFESRRRYLTNLYEHIVLK 1085


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,045
Number of Sequences: 5004
Number of extensions: 21438
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)