BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0641 (367 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 0.91 SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 1.2 SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 1.6 SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 24 6.4 SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 6.4 SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 24 8.5 >SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1628 Score = 27.1 bits (57), Expect = 0.91 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 231 KYITKIDNLCLIFIEYMYIFN 293 KY+T CL+ EYM+I+N Sbjct: 1210 KYLTSYFESCLLSTEYMHIYN 1230 >SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1513 Score = 26.6 bits (56), Expect = 1.2 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -3 Query: 188 ERTCIFSFSFFEMSNLTFT 132 E C+F++SF ++S+LT T Sbjct: 422 ENPCLFNYSFSDLSSLTIT 440 >SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 230 Score = 26.2 bits (55), Expect = 1.6 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -1 Query: 220 IVFYFFAQIKLKGRVFFRFLFSKCQI*RLQFSKVTVTDFFFKYDVVV 80 ++F+FF L F FLF QI + FS + F F + + V Sbjct: 117 LLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCV 163 >SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharomyces pombe|chr 3|||Manual Length = 686 Score = 24.2 bits (50), Expect = 6.4 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +2 Query: 143 NLTFRKKKTKKYTSFQFYLCKKIKYDFYPEVYYE 244 N + K T +YT +Q KKI++ + + Y++ Sbjct: 378 NDLYAKDVTLRYTDYQSSRLKKIRHVSFADKYFD 411 >SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 356 Score = 24.2 bits (50), Expect = 6.4 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -3 Query: 95 IRCSSVDGIQHAGRSMLRRFGSAYEYT 15 I C VD RS+L+RFGS + T Sbjct: 76 IECLLVDSKITKTRSLLKRFGSCLDET 102 >SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1375 Score = 23.8 bits (49), Expect = 8.5 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 129 NCKRQI*HFEKRKRKNTRPFNFICAK 206 N +R+I HFE R+R T + I K Sbjct: 1060 NTQRKIAHFESRRRYLTNLYEHIVLK 1085 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,287,045 Number of Sequences: 5004 Number of extensions: 21438 Number of successful extensions: 49 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 49 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 114084208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -