Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0641
(367 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine re... 27 5.4
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z70286-7|CAA94292.3| 431|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z68108-19|CAD44153.1| 1895|Caenorhabditis elegans Hypothetical p... 26 7.2
Z68108-18|CAB60299.4| 1868|Caenorhabditis elegans Hypothetical p... 26 7.2
Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical p... 26 7.2
Z50740-6|CAD44124.1| 1895|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z50740-5|CAB60282.4| 1868|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical pr... 26 7.2
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 26 7.2
AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase... 26 7.2
Z48783-6|CAA88700.1| 371|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and trans... 26 9.5
>AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 7 protein.
Length = 330
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = -1
Query: 226 IEIVFYFFAQIKLKGRVFFRFLFSKCQI*RLQFSKVT 116
+E++F+ ++ GRV F++LF+ + RL+ ++T
Sbjct: 188 VEVIFHIILLAQIVGRVIFQYLFNLNE--RLRAKQIT 222
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 150 HFEKRKRKNTRPFNFICAKK*NTISIP-KYITKIDNLC 260
H E R+ PF F CA N++ IP K++ DN C
Sbjct: 3950 HCEDVSRRTCSPFEFECA---NSVCIPRKFMCDGDNDC 3984
>Z70286-7|CAA94292.3| 431|Caenorhabditis elegans Hypothetical
protein K08C7.1 protein.
Length = 431
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 235 YFGIEIVFYFFAQIKLKGRVFFRFLFS 155
YFG E +YF A + L V F +++S
Sbjct: 162 YFGWEYTYYFLAVLCLISHVAFYYVYS 188
>Z68108-19|CAD44153.1| 1895|Caenorhabditis elegans Hypothetical
protein F31B12.1c protein.
Length = 1895
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 155 RKKKTKKYTSFQFYLCKKIKYDFYPEVYYEDR*SLPY 265
R+K + F +LC + + F PE D L Y
Sbjct: 878 RQKNQMSFEGFTRFLCDPVNFAFVPETIEPDEEDLRY 914
>Z68108-18|CAB60299.4| 1868|Caenorhabditis elegans Hypothetical
protein F31B12.1b protein.
Length = 1868
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 155 RKKKTKKYTSFQFYLCKKIKYDFYPEVYYEDR*SLPY 265
R+K + F +LC + + F PE D L Y
Sbjct: 878 RQKNQMSFEGFTRFLCDPVNFAFVPETIEPDEEDLRY 914
>Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical
protein F31B12.1a protein.
Length = 1898
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 155 RKKKTKKYTSFQFYLCKKIKYDFYPEVYYEDR*SLPY 265
R+K + F +LC + + F PE D L Y
Sbjct: 878 RQKNQMSFEGFTRFLCDPVNFAFVPETIEPDEEDLRY 914
>Z50740-6|CAD44124.1| 1895|Caenorhabditis elegans Hypothetical
protein F31B12.1c protein.
Length = 1895
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 155 RKKKTKKYTSFQFYLCKKIKYDFYPEVYYEDR*SLPY 265
R+K + F +LC + + F PE D L Y
Sbjct: 878 RQKNQMSFEGFTRFLCDPVNFAFVPETIEPDEEDLRY 914
>Z50740-5|CAB60282.4| 1868|Caenorhabditis elegans Hypothetical
protein F31B12.1b protein.
Length = 1868
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 155 RKKKTKKYTSFQFYLCKKIKYDFYPEVYYEDR*SLPY 265
R+K + F +LC + + F PE D L Y
Sbjct: 878 RQKNQMSFEGFTRFLCDPVNFAFVPETIEPDEEDLRY 914
>Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical
protein F31B12.1a protein.
Length = 1898
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 155 RKKKTKKYTSFQFYLCKKIKYDFYPEVYYEDR*SLPY 265
R+K + F +LC + + F PE D L Y
Sbjct: 878 RQKNQMSFEGFTRFLCDPVNFAFVPETIEPDEEDLRY 914
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 150 HFEKRKRKNTRPFNFICAKK*NTISIP-KYITKIDNLC 260
H E R+ PF F CA N++ IP K++ DN C
Sbjct: 3950 HCEDVSRRTCSPFEFECA---NSVCIPRKFMCDGDNDC 3984
>AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase C
PLC210 protein.
Length = 1898
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 155 RKKKTKKYTSFQFYLCKKIKYDFYPEVYYEDR*SLPY 265
R+K + F +LC + + F PE D L Y
Sbjct: 878 RQKNQMSFEGFTRFLCDPVNFAFVPETIEPDEEDLRY 914
>Z48783-6|CAA88700.1| 371|Caenorhabditis elegans Hypothetical
protein F33H1.5 protein.
Length = 371
Score = 25.8 bits (54), Expect = 9.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 203 KKIKYDFYPEVYYEDR 250
K+I YD +P+ +Y+DR
Sbjct: 177 KQIMYDLHPQYHYDDR 192
>Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical
protein K02C4.4 protein.
Length = 723
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 3 AESHSILVSGTEPP*HRPACMLDPVYTTTSY 95
+E ++ T PP P+C +YTTT Y
Sbjct: 244 SEYSNLQYPSTPPPPVPPSCSKREIYTTTDY 274
>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical
protein F43D9.1 protein.
Length = 1226
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -1
Query: 274 SINIRQRLSIF---VIYFGIEIVFYFFAQIKLKGR 179
S+++R +S+F ++ FG+ IV FF + L G+
Sbjct: 855 SMSLRHDISVFTSGMLAFGVAIVMLFFVSLLLLGQ 889
>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical
protein F43D9.1 protein.
Length = 1226
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -1
Query: 274 SINIRQRLSIF---VIYFGIEIVFYFFAQIKLKGR 179
S+++R +S+F ++ FG+ IV FF + L G+
Sbjct: 855 SMSLRHDISVFTSGMLAFGVAIVMLFFVSLLLLGQ 889
>AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and
transglutaminase domainprotein protein.
Length = 723
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 3 AESHSILVSGTEPP*HRPACMLDPVYTTTSY 95
+E ++ T PP P+C +YTTT Y
Sbjct: 244 SEYSNLQYPSTPPPPVPPSCSKREIYTTTDY 274
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,214,999
Number of Sequences: 27780
Number of extensions: 121682
Number of successful extensions: 306
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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