Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0641
         (367 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09400.1 68418.m01089 potassium transporter family protein si...    27   3.8  
At5g02570.1 68418.m00191 histone H2B, putative similar to histon...    27   5.0  
At1g03030.1 68414.m00275 phosphoribulokinase/uridine kinase fami...    26   6.7  

>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 295 ILKIYIYSINIRQRLSIFVIYFGIEIVFY 209
           ++ + I+ INI   ++  V++ G+E+VF+
Sbjct: 518 LIMLLIWQINIVIVIAFLVVFLGVELVFF 546


>At5g02570.1 68418.m00191 histone H2B, putative similar to histone
           H2B-2 Lycopersicon esculentum GI:3021483, Gossypium
           hirsutum SP|O22582, Asparagus officinalis GI:563329;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 132

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 137 TSNLTFRKKKTKKYT-SFQFYLCKKIKYDFYPEV 235
           TS +  +KKKTKK T +++ Y+ K +K   +P++
Sbjct: 28  TSEIVKKKKKTKKSTETYKIYIFKVLK-QVHPDI 60


>At1g03030.1 68414.m00275 phosphoribulokinase/uridine kinase family
           protein contains Pfam PF00485: Phosphoribulokinase /
           Uridine kinase family; Belongs to Interpro IPR006083
           Phosphoribulokinase/uridine kinase family; similar to
           Uridine kinase (Uridine monophosphokinase) (SP:P27515)
           {Saccharomyces cerevisiae};  ESTs gb|AA585719,
           gb|AA728503 and gb|T22272 come from this gene
          Length = 301

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 150 HFEKRKRKNTRPFNFICAKK*NTISIPKYITKIDNLCL 263
           HF  RKRKNT  +   C++K       K +T +D  C+
Sbjct: 41  HFSIRKRKNTPRYLISCSQK-------KDVTVVDGSCM 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,502,582
Number of Sequences: 28952
Number of extensions: 101715
Number of successful extensions: 200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)