BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0641 (367 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g09400.1 68418.m01089 potassium transporter family protein si... 27 3.8 At5g02570.1 68418.m00191 histone H2B, putative similar to histon... 27 5.0 At1g03030.1 68414.m00275 phosphoribulokinase/uridine kinase fami... 26 6.7 >At5g09400.1 68418.m01089 potassium transporter family protein similar to K+ transporter HAK5 [Arabidopsis thaliana] GI:7108597; contains Pfam profile PF02705: K+ potassium transporter; KUP/HAK/KT Transporter family member, PMID:11500563; Note: possible sequencing error causes a frameshift in the 4th exon|15810448|gb|AY056263 Length = 858 Score = 27.1 bits (57), Expect = 3.8 Identities = 9/29 (31%), Positives = 20/29 (68%) Frame = -1 Query: 295 ILKIYIYSINIRQRLSIFVIYFGIEIVFY 209 ++ + I+ INI ++ V++ G+E+VF+ Sbjct: 518 LIMLLIWQINIVIVIAFLVVFLGVELVFF 546 >At5g02570.1 68418.m00191 histone H2B, putative similar to histone H2B-2 Lycopersicon esculentum GI:3021483, Gossypium hirsutum SP|O22582, Asparagus officinalis GI:563329; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 Length = 132 Score = 26.6 bits (56), Expect = 5.0 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = +2 Query: 137 TSNLTFRKKKTKKYT-SFQFYLCKKIKYDFYPEV 235 TS + +KKKTKK T +++ Y+ K +K +P++ Sbjct: 28 TSEIVKKKKKTKKSTETYKIYIFKVLK-QVHPDI 60 >At1g03030.1 68414.m00275 phosphoribulokinase/uridine kinase family protein contains Pfam PF00485: Phosphoribulokinase / Uridine kinase family; Belongs to Interpro IPR006083 Phosphoribulokinase/uridine kinase family; similar to Uridine kinase (Uridine monophosphokinase) (SP:P27515) {Saccharomyces cerevisiae}; ESTs gb|AA585719, gb|AA728503 and gb|T22272 come from this gene Length = 301 Score = 26.2 bits (55), Expect = 6.7 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 150 HFEKRKRKNTRPFNFICAKK*NTISIPKYITKIDNLCL 263 HF RKRKNT + C++K K +T +D C+ Sbjct: 41 HFSIRKRKNTPRYLISCSQK-------KDVTVVDGSCM 71 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,502,582 Number of Sequences: 28952 Number of extensions: 101715 Number of successful extensions: 200 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 200 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 477939072 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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