Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0640
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7JRL9 Cluster: GH25289p; n=7; Endopterygota|Rep: GH252...    70   7e-11
UniRef50_Q6MMR8 Cluster: Putative uncharacterized protein precur...    33   7.5  
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox...    33   9.9  

>UniRef50_Q7JRL9 Cluster: GH25289p; n=7; Endopterygota|Rep: GH25289p
           - Drosophila melanogaster (Fruit fly)
          Length = 219

 Score = 69.7 bits (163), Expect = 7e-11
 Identities = 33/34 (97%), Positives = 33/34 (97%)
 Frame = +2

Query: 2   NCDLGMLKSLGIKDSELGDVKFFLEKLVNTGFLD 103
           N DLGMLKSLGIKDSELGDVKFFLEKLVNTGFLD
Sbjct: 186 NGDLGMLKSLGIKDSELGDVKFFLEKLVNTGFLD 219


>UniRef50_Q6MMR8 Cluster: Putative uncharacterized protein
           precursor; n=1; Bdellovibrio bacteriovorus|Rep: Putative
           uncharacterized protein precursor - Bdellovibrio
           bacteriovorus
          Length = 220

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 286 SPRGFLVVKQVYHTHSHWDQERDLLSPESYGVIGQVAIE 170
           +P+G L +   YH H  W + +DL S  S G +   A+E
Sbjct: 162 TPKGSLFLHLGYHLHKQWVRRKDLNSLSSLGALPATALE 200


>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
           oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
           Sub-unit I of an aa3-type cytochrome oxidase -
           Thiobacillus ferrooxidans (Acidithiobacillus
           ferrooxidans)
          Length = 627

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 245 SFSLGSGKGFTFS*ILWSHRAGSYRRRSLWGQSGQQSSIQRPTP-VLFSQGNRC*PVSPG 69
           SF LG+G     + +L+S R G     + WG +G +  I+ PTP V +  G     V P 
Sbjct: 549 SFFLGAGFLIPLANLLYSWRYGPKAEANPWGSNGLEWQIKSPTPYVPYPAGTEPEVVGPN 608

Query: 68  KT*RLRVQNP 39
                  ++P
Sbjct: 609 DNYAAEAKDP 618


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,681,437
Number of Sequences: 1657284
Number of extensions: 14636763
Number of successful extensions: 37575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37527
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)