BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0640 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 2.2 SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 27 2.9 SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 5.0 SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 5.0 SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.7 >SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 710 Score = 27.5 bits (58), Expect = 2.2 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -1 Query: 585 AXNPTYKPRTVT*CQSIMKCAPAFSRTPPXPS*RDASNCPDT 460 A NP KP+++ S+ + +P+ +P PS N DT Sbjct: 351 AWNPDNKPQSIVHWDSLRESSPSIPNSPIDPSNLYVKNLDDT 392 >SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 27.1 bits (57), Expect = 2.9 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 8 DLGMLKSLGIKDSELGDVKFFLEKLVNTGFL-D*IAPESASEYYSVVHFAPISSSFYSYL 184 D G KS ++ EL D K +V+TG L D AS+ + +++ ++YL Sbjct: 72 DFGEFKSFALRMKELADFKGVDLLMVDTGDLHDGNGLSDASDPQGI-----YTNNIFTYL 126 Query: 185 PYD 193 PYD Sbjct: 127 PYD 129 >SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 601 Score = 26.2 bits (55), Expect = 5.0 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 8 DLGMLKSLGIKDSELGDVKFFLEKLVNTGFL-D*IAPESASEYYSVVHFAPISSSFYSYL 184 D G KS ++ EL D K LV+TG L D AS+ + +++ ++YL Sbjct: 72 DFGEFKSFVLRMKELADFKDVDLLLVDTGDLHDGNGLSDASDPEGI-----YTNNIFTYL 126 Query: 185 PYD 193 PYD Sbjct: 127 PYD 129 >SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 665 Score = 26.2 bits (55), Expect = 5.0 Identities = 16/62 (25%), Positives = 28/62 (45%) Frame = +2 Query: 194 SIRFRRK*IPFLIPVRMSVIYLFNYEKSSGTRIFYDRPHRTIPVPSAISRTPPKPKRNRQ 373 S+ R + P +P+ + Y +N+ SS + + + PVP+ TP + NR Sbjct: 154 SLHLRSESAPISLPIHLYKSYSYNHSPSSLPTVLNSQALSSPPVPT----TPDEVSTNRL 209 Query: 374 ES 379 S Sbjct: 210 SS 211 >SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 554 Score = 25.4 bits (53), Expect = 8.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 523 RALHDALTLCYRAWFVCGVXRPILNLTLPFYL 618 R L + L +W V G+ P+ N LP+YL Sbjct: 362 RKLAISSILVILSWAVIGLAFPLYNAFLPYYL 393 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,007,035 Number of Sequences: 5004 Number of extensions: 60997 Number of successful extensions: 161 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 161 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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