Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0640
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.9  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   5.0  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.0  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.7  

>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 585 AXNPTYKPRTVT*CQSIMKCAPAFSRTPPXPS*RDASNCPDT 460
           A NP  KP+++    S+ + +P+   +P  PS     N  DT
Sbjct: 351 AWNPDNKPQSIVHWDSLRESSPSIPNSPIDPSNLYVKNLDDT 392


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 8   DLGMLKSLGIKDSELGDVKFFLEKLVNTGFL-D*IAPESASEYYSVVHFAPISSSFYSYL 184
           D G  KS  ++  EL D K     +V+TG L D      AS+   +      +++ ++YL
Sbjct: 72  DFGEFKSFALRMKELADFKGVDLLMVDTGDLHDGNGLSDASDPQGI-----YTNNIFTYL 126

Query: 185 PYD 193
           PYD
Sbjct: 127 PYD 129


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 8   DLGMLKSLGIKDSELGDVKFFLEKLVNTGFL-D*IAPESASEYYSVVHFAPISSSFYSYL 184
           D G  KS  ++  EL D K     LV+TG L D      AS+   +      +++ ++YL
Sbjct: 72  DFGEFKSFVLRMKELADFKDVDLLLVDTGDLHDGNGLSDASDPEGI-----YTNNIFTYL 126

Query: 185 PYD 193
           PYD
Sbjct: 127 PYD 129


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 194 SIRFRRK*IPFLIPVRMSVIYLFNYEKSSGTRIFYDRPHRTIPVPSAISRTPPKPKRNRQ 373
           S+  R +  P  +P+ +   Y +N+  SS   +   +   + PVP+    TP +   NR 
Sbjct: 154 SLHLRSESAPISLPIHLYKSYSYNHSPSSLPTVLNSQALSSPPVPT----TPDEVSTNRL 209

Query: 374 ES 379
            S
Sbjct: 210 SS 211


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 523 RALHDALTLCYRAWFVCGVXRPILNLTLPFYL 618
           R L  +  L   +W V G+  P+ N  LP+YL
Sbjct: 362 RKLAISSILVILSWAVIGLAFPLYNAFLPYYL 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,035
Number of Sequences: 5004
Number of extensions: 60997
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)