Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0640
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735     30   2.3  
08_02_0596 + 19117191-19117318,19117729-19117825,19118685-191187...    28   6.9  
01_05_0285 - 20382305-20382563,20383315-20384504                       28   6.9  
03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816           28   9.1  

>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
          Length = 637

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 233 PVRMSVIYLFNYEKSSGTRIFYDRPHRTIPVPSAISRTPP 352
           P+R  V  LF   KSS  R     P R    P A SR+PP
Sbjct: 246 PLRRDVPELFKEAKSSSKRFSTPPPRRKPSSPPAPSRSPP 285


>08_02_0596 +
           19117191-19117318,19117729-19117825,19118685-19118788,
           19119318-19119633,19120379-19120486
          Length = 250

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 245 SFSLGSGKGFTFS*ILWSHRAGSYRRRSLW 156
           S ++ SG+ +T++  LW  R+GS RRR  W
Sbjct: 174 SLNVTSGRSWTYN--LWMARSGSARRRLPW 201


>01_05_0285 - 20382305-20382563,20383315-20384504
          Length = 482

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -3

Query: 202 SYGVIGQVAIEGGAYGGKVDNRVVFRGRLRCYSVKE----TGVNQFL 74
           S GV+  +   GGA G  V NR+ F G    Y+V+E    TG+   L
Sbjct: 398 SLGVVSGMTASGGAVGAIVTNRLFFSGSR--YTVEEAISCTGITSLL 442


>03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816
          Length = 392

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 205 ESYGVIGQVAIEGGAYGGKVDNRVVFRGRLRCYSVKETGVNQFLQE 68
           +S  V+G+ +  G A+G K  NRVV     R ++V +  V + L+E
Sbjct: 158 DSRAVLGRRSAAGAAHGRKGKNRVVPERLSRDHNVADEDVRRELKE 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,653,150
Number of Sequences: 37544
Number of extensions: 409109
Number of successful extensions: 1137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)