Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0640
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15240.1 68414.m01824 phox (PX) domain-containing protein wea...    29   3.3  
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ...    28   7.6  
At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase, puta...    28   7.6  

>At1g15240.1 68414.m01824 phox (PX) domain-containing protein weak
           similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
           contains Pfam profiles PF00787: PX domain, PF02194: PXA
           domain
          Length = 706

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 556 RAWFVCGVXRPILNLTLPFYLGQMSXATPMKR 651
           R  F C V RP+LNL  P ++ +   A  M R
Sbjct: 257 RELFACCVIRPVLNLANPRFINERIEAAVMSR 288


>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 259

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 266 YEKSSGTRIFYDRPHRTIPVPSAISRTPPKPK 361
           YEK + T    DR   T P+  AI  TPPK K
Sbjct: 64  YEKFNDTIKELDRVSGTCPIRPAIPFTPPKEK 95


>At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase,
           putative / long-chain acyl-CoA synthetase, putative
           similar to GI:1617270 (MF7P) from [Brassica napus]
          Length = 665

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 301 VVEDSSPRGFLVVKQVYHTHSHWDQERDLLSP 206
           V +D   +GF ++K V+     +D ERDL++P
Sbjct: 603 VAKDKKLKGFELIKGVHLDTVPFDMERDLITP 634


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,840
Number of Sequences: 28952
Number of extensions: 326032
Number of successful extensions: 794
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)