Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0638
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   1.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   1.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.1  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   5.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.2  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +1

Query: 388 YREGQRAGPAYSKWQSRLW 444
           Y +G + GP    W+ ++W
Sbjct: 32  YHQGAQMGPEQQMWEPQMW 50


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +1

Query: 388 YREGQRAGPAYSKWQSRLW 444
           Y +G + GP    W+ ++W
Sbjct: 32  YHQGAQMGPEQQMWEPQMW 50


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 217 CHHTRWNCHRTNVNGRRLDAFIDDLTFEIV 128
           C++T W+ +R  +     +  I DL   I+
Sbjct: 91  CYYTNWSQYRVKIGKFTPEHIIPDLCTHII 120


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 394 EGQRAGPAYSKWQSRLWRR 450
           E Q A P Y  WQ  L RR
Sbjct: 336 EQQGAAPDYRHWQIPLGRR 354


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 268 RCHCSEG 288
           RCHCS+G
Sbjct: 169 RCHCSDG 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,751
Number of Sequences: 336
Number of extensions: 3011
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)