BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0638 (687 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 29 2.6 03_02_1008 - 13170630-13171481 29 2.6 01_01_0330 - 2681019-2683988 29 2.6 06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367... 29 3.5 03_03_0233 - 15656930-15656998,15657459-15657591,15657677-156577... 29 3.5 03_03_0230 - 15623648-15623653,15624333-15624383,15624477-156245... 29 4.6 02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 29 4.6 01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 29 4.6 01_06_0187 - 27296834-27296980,27297567-27297731,27297820-272979... 28 6.0 07_03_1659 - 28432628-28433092 28 8.0 05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 28 8.0 05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300... 28 8.0 03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 8.0 >12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-710408, 710502-710604,710701-710883,710932-711012,711072-711164, 711650-711832,713751-713966 Length = 828 Score = 29.5 bits (63), Expect = 2.6 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Frame = -2 Query: 413 GPARCPSRYSLALTYRGVSVPYLADGT----PADRHRIRLSPPGQAPSEQ*HRVTVRHGR 246 GPA CP Y + TY + + A GT P SP G+ + H ++ H R Sbjct: 635 GPAPCPPGYLIMRTYSQIDDSHRARGTGTYFPNPNLSKDRSPSGRGGRGKTHFLSHNHQR 694 Query: 245 LCHPGR 228 H GR Sbjct: 695 PHHYGR 700 >03_02_1008 - 13170630-13171481 Length = 283 Score = 29.5 bits (63), Expect = 2.6 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 292 KPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRR 167 +P + SD+E FG G ++ G L H + N +NGRR Sbjct: 86 RPNIFSDLEMEFGSGPWLLFRGQLPGHLSEDNGFDVFINGRR 127 >01_01_0330 - 2681019-2683988 Length = 989 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 501 VATRKSRITSWLGMTDSPPPKAGLPFTIGGPCTLSLSILP 382 ++T+++R W + DS GLP +GGP LS S LP Sbjct: 372 LSTKRTR-AEWESIRDSKWSIHGLPRELGGPLYLSYSNLP 410 >06_03_1325 - 29334401-29334859,29335163-29335857,29336538-29336750, 29338791-29339472,29339781-29340020 Length = 762 Score = 29.1 bits (62), Expect = 3.5 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = -3 Query: 349 ISLTGHQPIVIASVYLPPDKPLL-----SSDIESLFGMGDSVILAGD--LNCHH 209 ++L QP++ A+ PP PL + DIE FG+G + L+ D L C H Sbjct: 13 LALLALQPLIAAASRRPPPSPLCPKKCGNVDIEYPFGIGPNCSLSDDFSLECVH 66 >03_03_0233 - 15656930-15656998,15657459-15657591,15657677-15657729, 15658640-15658690,15658790-15658859,15659009-15659223, 15660465-15660570,15660686-15660753,15660861-15661148, 15661253-15661408,15661450-15661544,15661632-15661788 Length = 486 Score = 29.1 bits (62), Expect = 3.5 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 186 VRWQFHLVWWQFKSPARMTESPMP 257 VR + HL WW +KSP R + P Sbjct: 50 VRPKAHLFWWYYKSPQRASSPGKP 73 >03_03_0230 - 15623648-15623653,15624333-15624383,15624477-15624546, 15624646-15624848,15625011-15625116,15625228-15625295, 15625410-15625453,15628360-15628602,15629482-15629691, 15630207-15630287,15630289-15630355,15632167-15632386, 15632534-15632646,15634322-15634416,15634509-15634629 Length = 565 Score = 28.7 bits (61), Expect = 4.6 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = +3 Query: 120 GGPTISKVRSSINASRRLPLTFVRWQFHLVWWQFKSPARMTESPMP 257 GG + + + S R VR + HL WW ++SP R + P Sbjct: 16 GGGVAAISGGTNDGSERWGYVQVRPKAHLFWWYYRSPHRASSPGKP 61 >02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638, 32520145-32520384,32521033-32521149,32521213-32521606, 32521752-32521998,32522086-32522315,32522768-32522823, 32522903-32523094,32523274-32523376,32523478-32523544, 32524312-32525154,32525547-32525670,32525965-32526213, 32526354-32526443,32526530-32526649,32526664-32526738, 32527001-32527147,32527255-32527365,32527446-32527667, 32527777-32527896,32527971-32528270,32528355-32528480, 32529246-32529360,32529556-32530019,32530119-32530253, 32530684-32530788,32530876-32531053,32531143-32531864 Length = 2188 Score = 28.7 bits (61), Expect = 4.6 Identities = 12/49 (24%), Positives = 22/49 (44%) Frame = -3 Query: 268 ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGP 122 E+ + + + D +H +W HR +N LD + D+ +GP Sbjct: 1676 ENFISLSSATLTLNDGQANHVKWWSHRMKLN-NHLDKMLKDMEESWLGP 1723 >01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895, 2668344-2668410,2668473-2668562,2668672-2668787, 2668999-2671924 Length = 1170 Score = 28.7 bits (61), Expect = 4.6 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -1 Query: 501 VATRKSRITSWLGMTDSPPPKAGLPFTIGGPCTLSLSILP 382 V + K W + DS GLP +GGP LS S LP Sbjct: 370 VLSSKKTKAEWESIRDSKWSIHGLPKELGGPLYLSYSNLP 409 >01_06_0187 - 27296834-27296980,27297567-27297731,27297820-27297918, 27299276-27299616,27299824-27300643 Length = 523 Score = 28.3 bits (60), Expect = 6.0 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -2 Query: 356 VPYLADGTPADRHRIRLSPPGQAPSEQ*HRVTVRHGRLCHPGRRFKLPP 210 +PY H + QAP +Q H V HG + H G RF L P Sbjct: 304 LPYFHQHAGMHAHNLLDHTQVQAPYQQCHNNPVLHG-VNHSGNRFHLGP 351 >07_03_1659 - 28432628-28433092 Length = 154 Score = 27.9 bits (59), Expect = 8.0 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Frame = -2 Query: 416 AGPARCPSRYSLALTYRGVSV------PYLADG--TPADR-HRIRLSPPGQAP 285 +GPA CP YSL R + P+L DG DR H + + P Q+P Sbjct: 27 SGPAACPHAYSLLCRRRSDGIHHLLVDPWLLDGGRRQMDRIHHLLVDPAPQSP 79 >05_04_0284 - 19813179-19813340,19813464-19813748,19813850-19814131, 19814224-19814531,19814654-19814927,19815807-19816175, 19816372-19816434,19817495-19817789,19817818-19818008, 19818123-19818428,19818516-19818638 Length = 885 Score = 27.9 bits (59), Expect = 8.0 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Frame = -3 Query: 439 GGTAIYY-RRALHVVPLDTPSLSHIE-ASVCRISLTGHQPIVIASVYLPPDKPLLS-SDI 269 GGT ++ RR+L V + + E C+IS GHQ +V + + LS + Sbjct: 352 GGTTVHVSRRSLSPVAASSTVHAMSELGDTCKISRAGHQSVVAGGTTVHVSRRSLSPAAA 411 Query: 268 ESLFGMGDSVILAGDLNCH 212 S +I G + CH Sbjct: 412 SSTVHAMSELIAGGGVLCH 430 >05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102, 3003571-3004442,3004592-3004773,3005206-3005295, 3005388-3005675,3005776-3005997,3006053-3006133, 3006634-3006861 Length = 1475 Score = 27.9 bits (59), Expect = 8.0 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 379 LSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLF-GMGDSVILAGDLNC 215 L+ +E +V ++++TG IAS L K L+++ F GD + D C Sbjct: 229 LTRLEGTVAKVAMTGVLVYWIASAQLGTSKSLINASSPPAFQDPGDLTLFCSDDEC 284 >03_06_0576 + 34832900-34832911,34833006-34833122,34833752-34833810, 34833901-34833960,34834197-34834250,34834332-34834380, 34834493-34834540,34834889-34834954,34835591-34835641, 34835732-34835851,34835921-34836005,34836428-34836509, 34836666-34836774,34837005-34837051,34837131-34837188, 34839114-34839220,34839700-34839765,34839833-34839879, 34839977-34840042,34840146-34840243,34840344-34840469, 34840551-34840835,34840920-34840985,34841079-34841228 Length = 675 Score = 27.9 bits (59), Expect = 8.0 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 163 DAFIDDLTFEIVGPPTPTCY 104 D F + FE + PPTPTC+ Sbjct: 530 DCFEGIICFETLNPPTPTCH 549 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,868,465 Number of Sequences: 37544 Number of extensions: 394211 Number of successful extensions: 1078 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1049 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1078 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1744894544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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