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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0638
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71...    29   2.6  
03_02_1008 - 13170630-13171481                                         29   2.6  
01_01_0330 - 2681019-2683988                                           29   2.6  
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367...    29   3.5  
03_03_0233 - 15656930-15656998,15657459-15657591,15657677-156577...    29   3.5  
03_03_0230 - 15623648-15623653,15624333-15624383,15624477-156245...    29   4.6  
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196...    29   4.6  
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    29   4.6  
01_06_0187 - 27296834-27296980,27297567-27297731,27297820-272979...    28   6.0  
07_03_1659 - 28432628-28433092                                         28   8.0  
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141...    28   8.0  
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    28   8.0  
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338...    28   8.0  

>12_01_0089 -
           707260-707317,707626-708050,708663-709621,710223-710408,
           710502-710604,710701-710883,710932-711012,711072-711164,
           711650-711832,713751-713966
          Length = 828

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -2

Query: 413 GPARCPSRYSLALTYRGVSVPYLADGT----PADRHRIRLSPPGQAPSEQ*HRVTVRHGR 246
           GPA CP  Y +  TY  +   + A GT    P        SP G+    + H ++  H R
Sbjct: 635 GPAPCPPGYLIMRTYSQIDDSHRARGTGTYFPNPNLSKDRSPSGRGGRGKTHFLSHNHQR 694

Query: 245 LCHPGR 228
             H GR
Sbjct: 695 PHHYGR 700


>03_02_1008 - 13170630-13171481
          Length = 283

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 292 KPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRR 167
           +P + SD+E  FG G  ++  G L  H +  N     +NGRR
Sbjct: 86  RPNIFSDLEMEFGSGPWLLFRGQLPGHLSEDNGFDVFINGRR 127


>01_01_0330 - 2681019-2683988
          Length = 989

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 501 VATRKSRITSWLGMTDSPPPKAGLPFTIGGPCTLSLSILP 382
           ++T+++R   W  + DS     GLP  +GGP  LS S LP
Sbjct: 372 LSTKRTR-AEWESIRDSKWSIHGLPRELGGPLYLSYSNLP 410


>06_03_1325 -
           29334401-29334859,29335163-29335857,29336538-29336750,
           29338791-29339472,29339781-29340020
          Length = 762

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = -3

Query: 349 ISLTGHQPIVIASVYLPPDKPLL-----SSDIESLFGMGDSVILAGD--LNCHH 209
           ++L   QP++ A+   PP  PL      + DIE  FG+G +  L+ D  L C H
Sbjct: 13  LALLALQPLIAAASRRPPPSPLCPKKCGNVDIEYPFGIGPNCSLSDDFSLECVH 66


>03_03_0233 -
           15656930-15656998,15657459-15657591,15657677-15657729,
           15658640-15658690,15658790-15658859,15659009-15659223,
           15660465-15660570,15660686-15660753,15660861-15661148,
           15661253-15661408,15661450-15661544,15661632-15661788
          Length = 486

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 186 VRWQFHLVWWQFKSPARMTESPMP 257
           VR + HL WW +KSP R +    P
Sbjct: 50  VRPKAHLFWWYYKSPQRASSPGKP 73


>03_03_0230 -
           15623648-15623653,15624333-15624383,15624477-15624546,
           15624646-15624848,15625011-15625116,15625228-15625295,
           15625410-15625453,15628360-15628602,15629482-15629691,
           15630207-15630287,15630289-15630355,15632167-15632386,
           15632534-15632646,15634322-15634416,15634509-15634629
          Length = 565

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 120 GGPTISKVRSSINASRRLPLTFVRWQFHLVWWQFKSPARMTESPMP 257
           GG   +    + + S R     VR + HL WW ++SP R +    P
Sbjct: 16  GGGVAAISGGTNDGSERWGYVQVRPKAHLFWWYYRSPHRASSPGKP 61


>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
            32520145-32520384,32521033-32521149,32521213-32521606,
            32521752-32521998,32522086-32522315,32522768-32522823,
            32522903-32523094,32523274-32523376,32523478-32523544,
            32524312-32525154,32525547-32525670,32525965-32526213,
            32526354-32526443,32526530-32526649,32526664-32526738,
            32527001-32527147,32527255-32527365,32527446-32527667,
            32527777-32527896,32527971-32528270,32528355-32528480,
            32529246-32529360,32529556-32530019,32530119-32530253,
            32530684-32530788,32530876-32531053,32531143-32531864
          Length = 2188

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 268  ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGP 122
            E+   +  + +   D   +H +W  HR  +N   LD  + D+    +GP
Sbjct: 1676 ENFISLSSATLTLNDGQANHVKWWSHRMKLN-NHLDKMLKDMEESWLGP 1723


>01_01_0328 -
           2664412-2664535,2665388-2665465,2667784-2667895,
           2668344-2668410,2668473-2668562,2668672-2668787,
           2668999-2671924
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 501 VATRKSRITSWLGMTDSPPPKAGLPFTIGGPCTLSLSILP 382
           V + K     W  + DS     GLP  +GGP  LS S LP
Sbjct: 370 VLSSKKTKAEWESIRDSKWSIHGLPKELGGPLYLSYSNLP 409


>01_06_0187 -
           27296834-27296980,27297567-27297731,27297820-27297918,
           27299276-27299616,27299824-27300643
          Length = 523

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -2

Query: 356 VPYLADGTPADRHRIRLSPPGQAPSEQ*HRVTVRHGRLCHPGRRFKLPP 210
           +PY         H +      QAP +Q H   V HG + H G RF L P
Sbjct: 304 LPYFHQHAGMHAHNLLDHTQVQAPYQQCHNNPVLHG-VNHSGNRFHLGP 351


>07_03_1659 - 28432628-28433092
          Length = 154

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = -2

Query: 416 AGPARCPSRYSLALTYRGVSV------PYLADG--TPADR-HRIRLSPPGQAP 285
           +GPA CP  YSL    R   +      P+L DG     DR H + + P  Q+P
Sbjct: 27  SGPAACPHAYSLLCRRRSDGIHHLLVDPWLLDGGRRQMDRIHHLLVDPAPQSP 79


>05_04_0284 -
           19813179-19813340,19813464-19813748,19813850-19814131,
           19814224-19814531,19814654-19814927,19815807-19816175,
           19816372-19816434,19817495-19817789,19817818-19818008,
           19818123-19818428,19818516-19818638
          Length = 885

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = -3

Query: 439 GGTAIYY-RRALHVVPLDTPSLSHIE-ASVCRISLTGHQPIVIASVYLPPDKPLLS-SDI 269
           GGT ++  RR+L  V   +   +  E    C+IS  GHQ +V     +   +  LS +  
Sbjct: 352 GGTTVHVSRRSLSPVAASSTVHAMSELGDTCKISRAGHQSVVAGGTTVHVSRRSLSPAAA 411

Query: 268 ESLFGMGDSVILAGDLNCH 212
            S       +I  G + CH
Sbjct: 412 SSTVHAMSELIAGGGVLCH 430


>05_01_0384 +
           2997465-2999777,2999960-3000035,3003027-3003102,
           3003571-3004442,3004592-3004773,3005206-3005295,
           3005388-3005675,3005776-3005997,3006053-3006133,
           3006634-3006861
          Length = 1475

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 379 LSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLF-GMGDSVILAGDLNC 215
           L+ +E +V ++++TG     IAS  L   K L+++     F   GD  +   D  C
Sbjct: 229 LTRLEGTVAKVAMTGVLVYWIASAQLGTSKSLINASSPPAFQDPGDLTLFCSDDEC 284


>03_06_0576 +
           34832900-34832911,34833006-34833122,34833752-34833810,
           34833901-34833960,34834197-34834250,34834332-34834380,
           34834493-34834540,34834889-34834954,34835591-34835641,
           34835732-34835851,34835921-34836005,34836428-34836509,
           34836666-34836774,34837005-34837051,34837131-34837188,
           34839114-34839220,34839700-34839765,34839833-34839879,
           34839977-34840042,34840146-34840243,34840344-34840469,
           34840551-34840835,34840920-34840985,34841079-34841228
          Length = 675

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 163 DAFIDDLTFEIVGPPTPTCY 104
           D F   + FE + PPTPTC+
Sbjct: 530 DCFEGIICFETLNPPTPTCH 549


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,465
Number of Sequences: 37544
Number of extensions: 394211
Number of successful extensions: 1078
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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