Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0638
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 29 2.6
03_02_1008 - 13170630-13171481 29 2.6
01_01_0330 - 2681019-2683988 29 2.6
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367... 29 3.5
03_03_0233 - 15656930-15656998,15657459-15657591,15657677-156577... 29 3.5
03_03_0230 - 15623648-15623653,15624333-15624383,15624477-156245... 29 4.6
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 29 4.6
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 29 4.6
01_06_0187 - 27296834-27296980,27297567-27297731,27297820-272979... 28 6.0
07_03_1659 - 28432628-28433092 28 8.0
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 28 8.0
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300... 28 8.0
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 8.0
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -2
Query: 413 GPARCPSRYSLALTYRGVSVPYLADGT----PADRHRIRLSPPGQAPSEQ*HRVTVRHGR 246
GPA CP Y + TY + + A GT P SP G+ + H ++ H R
Sbjct: 635 GPAPCPPGYLIMRTYSQIDDSHRARGTGTYFPNPNLSKDRSPSGRGGRGKTHFLSHNHQR 694
Query: 245 LCHPGR 228
H GR
Sbjct: 695 PHHYGR 700
>03_02_1008 - 13170630-13171481
Length = 283
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 292 KPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRR 167
+P + SD+E FG G ++ G L H + N +NGRR
Sbjct: 86 RPNIFSDLEMEFGSGPWLLFRGQLPGHLSEDNGFDVFINGRR 127
>01_01_0330 - 2681019-2683988
Length = 989
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 501 VATRKSRITSWLGMTDSPPPKAGLPFTIGGPCTLSLSILP 382
++T+++R W + DS GLP +GGP LS S LP
Sbjct: 372 LSTKRTR-AEWESIRDSKWSIHGLPRELGGPLYLSYSNLP 410
>06_03_1325 -
29334401-29334859,29335163-29335857,29336538-29336750,
29338791-29339472,29339781-29340020
Length = 762
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = -3
Query: 349 ISLTGHQPIVIASVYLPPDKPLL-----SSDIESLFGMGDSVILAGD--LNCHH 209
++L QP++ A+ PP PL + DIE FG+G + L+ D L C H
Sbjct: 13 LALLALQPLIAAASRRPPPSPLCPKKCGNVDIEYPFGIGPNCSLSDDFSLECVH 66
>03_03_0233 -
15656930-15656998,15657459-15657591,15657677-15657729,
15658640-15658690,15658790-15658859,15659009-15659223,
15660465-15660570,15660686-15660753,15660861-15661148,
15661253-15661408,15661450-15661544,15661632-15661788
Length = 486
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 186 VRWQFHLVWWQFKSPARMTESPMP 257
VR + HL WW +KSP R + P
Sbjct: 50 VRPKAHLFWWYYKSPQRASSPGKP 73
>03_03_0230 -
15623648-15623653,15624333-15624383,15624477-15624546,
15624646-15624848,15625011-15625116,15625228-15625295,
15625410-15625453,15628360-15628602,15629482-15629691,
15630207-15630287,15630289-15630355,15632167-15632386,
15632534-15632646,15634322-15634416,15634509-15634629
Length = 565
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 120 GGPTISKVRSSINASRRLPLTFVRWQFHLVWWQFKSPARMTESPMP 257
GG + + + S R VR + HL WW ++SP R + P
Sbjct: 16 GGGVAAISGGTNDGSERWGYVQVRPKAHLFWWYYRSPHRASSPGKP 61
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -3
Query: 268 ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGP 122
E+ + + + D +H +W HR +N LD + D+ +GP
Sbjct: 1676 ENFISLSSATLTLNDGQANHVKWWSHRMKLN-NHLDKMLKDMEESWLGP 1723
>01_01_0328 -
2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 501 VATRKSRITSWLGMTDSPPPKAGLPFTIGGPCTLSLSILP 382
V + K W + DS GLP +GGP LS S LP
Sbjct: 370 VLSSKKTKAEWESIRDSKWSIHGLPKELGGPLYLSYSNLP 409
>01_06_0187 -
27296834-27296980,27297567-27297731,27297820-27297918,
27299276-27299616,27299824-27300643
Length = 523
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 356 VPYLADGTPADRHRIRLSPPGQAPSEQ*HRVTVRHGRLCHPGRRFKLPP 210
+PY H + QAP +Q H V HG + H G RF L P
Sbjct: 304 LPYFHQHAGMHAHNLLDHTQVQAPYQQCHNNPVLHG-VNHSGNRFHLGP 351
>07_03_1659 - 28432628-28433092
Length = 154
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Frame = -2
Query: 416 AGPARCPSRYSLALTYRGVSV------PYLADG--TPADR-HRIRLSPPGQAP 285
+GPA CP YSL R + P+L DG DR H + + P Q+P
Sbjct: 27 SGPAACPHAYSLLCRRRSDGIHHLLVDPWLLDGGRRQMDRIHHLLVDPAPQSP 79
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = -3
Query: 439 GGTAIYY-RRALHVVPLDTPSLSHIE-ASVCRISLTGHQPIVIASVYLPPDKPLLS-SDI 269
GGT ++ RR+L V + + E C+IS GHQ +V + + LS +
Sbjct: 352 GGTTVHVSRRSLSPVAASSTVHAMSELGDTCKISRAGHQSVVAGGTTVHVSRRSLSPAAA 411
Query: 268 ESLFGMGDSVILAGDLNCH 212
S +I G + CH
Sbjct: 412 SSTVHAMSELIAGGGVLCH 430
>05_01_0384 +
2997465-2999777,2999960-3000035,3003027-3003102,
3003571-3004442,3004592-3004773,3005206-3005295,
3005388-3005675,3005776-3005997,3006053-3006133,
3006634-3006861
Length = 1475
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 379 LSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLF-GMGDSVILAGDLNC 215
L+ +E +V ++++TG IAS L K L+++ F GD + D C
Sbjct: 229 LTRLEGTVAKVAMTGVLVYWIASAQLGTSKSLINASSPPAFQDPGDLTLFCSDDEC 284
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 163 DAFIDDLTFEIVGPPTPTCY 104
D F + FE + PPTPTC+
Sbjct: 530 DCFEGIICFETLNPPTPTCH 549
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,465
Number of Sequences: 37544
Number of extensions: 394211
Number of successful extensions: 1078
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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