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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0638
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    85   1e-16
M22874-2|AAA28675.1|  916|Drosophila melanogaster protein ( D.me...    84   1e-16
X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    75   9e-14
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    75   1e-13
M38643-2|AAA28940.1|  192|Drosophila melanogaster protein ( D.me...    73   3e-13
AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      73   3e-13
AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown prot...    70   3e-12
AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p pro...    65   7e-11
AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse tran...    61   2e-09
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ...    60   4e-09
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever...    58   1e-08
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ...    57   2e-08
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ...    56   3e-08
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ...    56   3e-08
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       53   3e-07
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ...    53   4e-07
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ...    50   2e-06
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ...    50   2e-06
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ...    50   2e-06
U02279-1|AAA18301.1|  964|Drosophila melanogaster protein ( Dros...    46   4e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    45   1e-04

>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 4/209 (1%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANYVMV-RNDRLXASK 440
           +A +N  G  +++ ++ +FL +  +D+ L+ E     S+ + ++ +Y     N     + 
Sbjct: 6   IATWNANGVSQRKLELAQFLHEKHIDVMLLSET-HLTSKYNFQIRDYHFYGTNHPDGKAH 64

Query: 439 GGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESL 260
           GGTAI  R  +        + +H++A+   I L  +  + +A+VY PP   +L +     
Sbjct: 65  GGTAILIRNRMKHHFYKEFAENHLQATSINIQLDDNTLLTLAAVYCPPRFTVLEAQFLDF 124

Query: 259 F-GMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEI--VGPPTPTCYPYNIA 89
           F  +G   I AGD N  HT W     N  G++L   I   T ++  V P +PT +P ++ 
Sbjct: 125 FQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYKTIIKATNKLDHVSPGSPTYWPSDLN 184

Query: 88  LRPSTIDLALLRNVTLRLRSIEAMSELES 2
             P  ID A+ +N++  L   E + +L S
Sbjct: 185 KLPDLIDFAVTKNISRSLVKAECLPDLSS 213


>M22874-2|AAA28675.1|  916|Drosophila melanogaster protein (
           D.melanogaster LINEelement J-1, clone J-1. ).
          Length = 916

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 3/208 (1%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANYVMVRNDRLXA-SK 440
           +  +N  G  R  +++  FL D+ +D+ L  E   +  +R   +  Y+M         S+
Sbjct: 8   IGLWNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQRI-YLPGYLMYHAHHPSGNSR 66

Query: 439 GGTAIYYRRALHVVPLDTPSLSHIEASVCRISL-TGHQPIVIASVYLPPDKPLLSSDIES 263
           GG+A+  +  L   PL TP +S  +  + R+ L T    + +A+VYLPP +  +  D +S
Sbjct: 67  GGSAVIIKSRLCHSPL-TP-ISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKS 124

Query: 262 LF-GMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGPPTPTCYPYNIAL 86
           +F  +G+  I  GD N  H  W   R+   G+ L   I    ++++    PT Y YN  L
Sbjct: 125 MFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPTFYSYNPLL 184

Query: 85  RPSTIDLALLRNVTLRLRSIEAMSELES 2
            PS +D  +     +    ++ + EL S
Sbjct: 185 TPSALDFFITCGYGMGRLDVQTLQELSS 212


>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 74.9 bits (176), Expect = 9e-14
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 4/212 (1%)
 Frame = -3

Query: 625 SXXLAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANYVMV-RNDRLX 449
           S  ++ +N  G  R   ++ +F+ +  +D+ L+ E     ++ +  +  Y+    N    
Sbjct: 3   SLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSET-HLTNKNNFHIPGYLFYGTNHPDG 61

Query: 448 ASKGGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDI 269
            + GGT I  R  +    L+    ++++++   + L       +A+VY PP  P+     
Sbjct: 62  KAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGST-TLAAVYCPPRFPISEDQF 120

Query: 268 ESLFG-MGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFI--DDLTFEIVGPPTPTCYPY 98
              F  +GD  I AGD N  HT W     +  G++L   +   +   + V P  PT +P 
Sbjct: 121 MEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPKGKQLYNALTKPENKLDYVSPGKPTYWPA 180

Query: 97  NIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           +    P  ID A+ ++V   + + EA+++L S
Sbjct: 181 DPRKIPDLIDFAITKHVPRNMVTAEALADLSS 212


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 4/212 (1%)
 Frame = -3

Query: 625 SXXLAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANYVMV-RNDRLX 449
           S  ++ +N  G  R   ++ +F+ +  +D+ L+ E     ++ +  +  Y+    N    
Sbjct: 3   SLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSET-HLTNKNNFHIPGYLFYGTNHPDG 61

Query: 448 ASKGGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDI 269
            + GGT I  R  +    L+    ++++++   + L       +A+VY PP  P+     
Sbjct: 62  KAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGST-TLAAVYCPPRFPISEDQF 120

Query: 268 ESLFG-MGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFI--DDLTFEIVGPPTPTCYPY 98
              F  +GD  I AGD N  HT W        G++L   +   +   + V P  PT +P 
Sbjct: 121 MEFFNTLGDRFIAAGDYNAKHTHWGSRLVTPKGKQLYNALTKPENKLDYVSPGKPTYWPA 180

Query: 97  NIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           +    P  ID A+ ++V   + + EA+++L S
Sbjct: 181 DPRKIPDLIDFAITKHVPRNMVTAEALADLSS 212


>M38643-2|AAA28940.1|  192|Drosophila melanogaster protein (
           D.melanogaster mobileelement jockey gag-specific protein
           gene, complete cds.).
          Length = 192

 Score = 73.3 bits (172), Expect = 3e-13
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 3/177 (1%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANYVMVRNDRLXA-SK 440
           +  +N  G  R  +++  FL D+ +D+ L  E   +  +R   +  Y+M         S+
Sbjct: 8   IGLWNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQRI-YLPGYLMYHAHHPSGNSR 66

Query: 439 GGTAIYYRRALHVVPLDTPSLSHIEASVCRISL-TGHQPIVIASVYLPPDKPLLSSDIES 263
           GG+A+  +  L   PL TP +S  +  + R+ L T    + +A+VYLPP +  +  D +S
Sbjct: 67  GGSAVIIKSRLCHSPL-TP-ISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKS 124

Query: 262 LF-GMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGPPTPTCYPYN 95
           +F  +G+  I  GD N  H  W   R+   G+ L   I    ++++    PT Y YN
Sbjct: 125 MFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPTFYSYN 181


>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 73.3 bits (172), Expect = 3e-13
 Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 20/222 (9%)
 Frame = -3

Query: 607 YNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANYVMVRNDRLXASKGGTA 428
           +N      +R ++ +FL +N + I L+ E     S R   +  Y + RNDR  +  GG A
Sbjct: 17  WNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRF-NIPEYTIYRNDRKESRGGGVA 75

Query: 427 IYYRRALHVVPLDTPSL-SHIEASV-CRISLTGHQPIVIASVY--------LPPD----- 293
           I     L  +    P + SH+  +V  +I+   +  + I S+Y        +P       
Sbjct: 76  IAVSNTL--IHEQIPCIKSHVIENVGIQINTDSNSSLKIYSIYFAGNTSKCIPSSCDLSW 133

Query: 292 -----KPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIV 128
                K L  SD+  +  +  + ++ GD N  H  W C R N  G+ L+   D   F I+
Sbjct: 134 DHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSIL 193

Query: 127 GPPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
            P  PT  P+N   + ST+DL  L N+  +L +   M EL S
Sbjct: 194 YPTQPTYIPHNHKAKASTLDLC-LTNIPNQLANPAVMQELSS 234


>AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown
           protein.
          Length = 908

 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 3/205 (1%)
 Frame = -3

Query: 607 YNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANYVM-VRNDRLXAS-KGG 434
           +N  G   +  ++  F+R + +D+ L+ E   K +   PK+  +V    ND    + KGG
Sbjct: 9   WNADGVSTKLPEVECFVRRHEIDVLLLSETHCKGAET-PKLFGFVAYTANDPSGGNAKGG 67

Query: 433 TAIYYRRALHVVPLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLFG 254
            AI  + +L   PL   + + ++ +   I  T   PI   +VY PP     + + + +  
Sbjct: 68  AAILIKNSLAHFPLTPIATAKVQLAPAVIE-TALGPISFGAVYCPPRFAWTTDEFKDILE 126

Query: 253 -MGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGPPTPTCYPYNIALRPS 77
                 I+AGD N  H  W   R+N  G  L   + +   + +    PT YPY     P 
Sbjct: 127 EFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPG 186

Query: 76  TIDLALLRNVTLRLRSIEAMSELES 2
            ID AL + V     +I A+ EL S
Sbjct: 187 YIDFALTKGVLGIHANISAVVELSS 211


>AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p
           protein.
          Length = 906

 Score = 65.3 bits (152), Expect = 7e-11
 Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 3/205 (1%)
 Frame = -3

Query: 607 YNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSR--RDPKVANYVMVRNDRLXASKGG 434
           +N  G  R+   +  F  +  VDI LV E   K     +    A Y   R      S GG
Sbjct: 9   WNANGISRKAKDVELFAHNKKVDILLVTELRLKRGETVKIYGYAYYPAYRPSLNNNSVGG 68

Query: 433 TAIYYRRALHVVPLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLF- 257
            A++ R  L   P       HI+ S  +++ TG   +  +++Y  P   +       +  
Sbjct: 69  VAVFVRTTLRHFPQRVIETRHIQLSSVKVA-TGLGDLQFSAIYCSPSTRIEERHFTDIIR 127

Query: 256 GMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGPPTPTCYPYNIALRPS 77
             G   ++ GD N  H  W     +  GR L   +     +I+   +PT YPY  +  PS
Sbjct: 128 ACGQRYLVGGDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPS 187

Query: 76  TIDLALLRNVTLRLRSIEAMSELES 2
            ID A+   +   L +I    +L+S
Sbjct: 188 CIDFAVYHGIPDHLATITQSWDLDS 212


>AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 832

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
 Frame = -3

Query: 487 VANYVMVRNDRLXASKGGTAIYYRRALHVVPLDTPSL-SHIEASV-CRISLTGHQPIVIA 314
           +  Y + RNDR  +  GG AI     L  +    P + SH+  +V  +I+   +  + I 
Sbjct: 4   IPEYTIYRNDRKESRGGGVAIAVSNTL--IHEQIPCIKSHVIENVGIQINTDSNSSLKIY 61

Query: 313 SVY--------LPPD----------KPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCHR 188
           S+Y        +P            K L  SD+  +  +  + ++ GD N  H  W C R
Sbjct: 62  SIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTR 121

Query: 187 TNVNGRRLDAFIDDLTFEIVGPPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSEL 8
            N  G+ L+   D   F I+ P  PT  P+N   + ST+DL  L N+  +L +   M EL
Sbjct: 122 ANGWGKILNELSDLGKFSILYPTQPTYIPHNHKAKASTLDLC-LTNIPNQLANPAVMQEL 180

Query: 7   ES 2
            S
Sbjct: 181 SS 182


>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
           protein.
          Length = 1092

 Score = 59.7 bits (138), Expect = 4e-09
 Identities = 56/217 (25%), Positives = 92/217 (42%), Gaps = 12/217 (5%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANYVMVRNDRLXASK- 440
           +A +N  G   + D++  F+ +    I +V E     +    ++  Y         +SK 
Sbjct: 24  IAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPASSKR 83

Query: 439 GGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGH---QPIVIASVYLPPD---KPLLS 278
           GG A     +L  + L+      I+++   +    +   + IVIASVY PP     P   
Sbjct: 84  GGVATIVNSSLRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLSWSPHHF 143

Query: 277 SDI----ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRL-DAFIDDLTFEIVGPPTP 113
           +D+    E   G    +IL GD N  H +W C R    G  L DA   D   EIV   + 
Sbjct: 144 TDVLNFAEKTMGGQTKLILCGDWNAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSA 203

Query: 112 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           T +P++    PS ID ++ + +    + I + + L S
Sbjct: 204 THFPHDTRKSPSAIDFSICKRLGRYEKRISSSAHLSS 240


>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
           transcriptase protein.
          Length = 1084

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 12/217 (5%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANY-VMVRNDRLXASK 440
           +A +N  G   + D++  F+ +    I +V E     +    ++  Y   +  + + + +
Sbjct: 12  IAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPVSSKR 71

Query: 439 GGTAIYYRRAL-HVV--PLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLS--- 278
           GG A     ++ H+   P++   +      +   +    + IVIASVY PP    L    
Sbjct: 72  GGVATIVNSSIRHMALKPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLRWLPHHF 131

Query: 277 SDI----ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRL-DAFIDDLTFEIVGPPTP 113
           +D+    E   G     IL GD N  H +W C R    G  L +A   D T EI+     
Sbjct: 132 TDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCA 191

Query: 112 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           T +P++    PS ID ++ + +    + I + ++L S
Sbjct: 192 THFPHDTRKNPSAIDFSICKGLGRFEKRISSGADLSS 228


>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 12/217 (5%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANY-VMVRNDRLXASK 440
           +A +N  G   + D++  F+ +    I +V E          ++  Y   +  + + + +
Sbjct: 12  IAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKR 71

Query: 439 GGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGH---QPIVIASVYLPPD---KPLLS 278
           GG A     ++  + L+      I+++   +    +   + IVIASVY PP     P   
Sbjct: 72  GGVATIVNSSIRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLSWSPHHF 131

Query: 277 SDI----ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRL-DAFIDDLTFEIVGPPTP 113
           +D+    E   G     IL GD N  H +W C R    G  L +A   D   EI+     
Sbjct: 132 TDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCA 191

Query: 112 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           T +P++    PS ID ++ + +    + I ++++L S
Sbjct: 192 THFPHDTRKNPSAIDFSICKGLGRLEKRISSVADLSS 228


>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 12/217 (5%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANY-VMVRNDRLXASK 440
           +A +N  G   + D++  F+ +    I +V E          ++  Y   +  + + + +
Sbjct: 12  IAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKR 71

Query: 439 GGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGH---QPIVIASVYLPPD---KPLLS 278
           GG A     ++  + L+      I+++   +    +   + IVIASVY PP     P   
Sbjct: 72  GGVATIVNSSIRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLSWSPHHF 131

Query: 277 SDI----ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRL-DAFIDDLTFEIVGPPTP 113
           +D+    E   G     IL GD N  H +W C R    G  L +A   D   EI+     
Sbjct: 132 TDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCA 191

Query: 112 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           T +P++    PS ID ++ + +    + I + ++L S
Sbjct: 192 THFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSS 228


>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 12/217 (5%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANY-VMVRNDRLXASK 440
           +A +N  G   + D++  F+ +    I +V E          ++  Y   +  + + + +
Sbjct: 12  IAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSSKR 71

Query: 439 GGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGH---QPIVIASVYLPPD---KPLLS 278
           GG A     ++  + L+      I+++   +    +   + IVIASVY PP     P   
Sbjct: 72  GGVATIVNSSIRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLSWSPHHF 131

Query: 277 SDI----ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRL-DAFIDDLTFEIVGPPTP 113
           +D+    E   G     IL GD N  H +W C R    G  L +A   D   EI+     
Sbjct: 132 TDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCA 191

Query: 112 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           T +P++    PS ID ++ + +    + I + ++L S
Sbjct: 192 THFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSS 228


>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 6/172 (3%)
 Frame = -3

Query: 607 YNXXGXXRQRDQIFEFLRDNXVDIXLVQEX---CXKPSRRDPKVANYVMVRNDRLXASKG 437
           +N  G     +++   ++D+  DI  +QE    C   +   PK  +          ++K 
Sbjct: 8   WNIHGIFNNYNELTLLIKDHAPDIVFLQETKLPCNSTNFICPKEYSGYFHNFSYNTSAKQ 67

Query: 436 GTAIYYRRALHVVPLDTPSLSHIEASV-CR-ISLTGHQPIVIASVYLPPDKPLLSSDI-E 266
           G  +  +R    VP    +  +I +S+ C  + L   Q I I + Y+PP +   SSDI E
Sbjct: 68  GIGVLIKRN---VP---HTYRNINSSILCSALQLNFEQVINIVNAYIPPSQIFSSSDISE 121

Query: 265 SLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGPPTPT 110
            L  +  S IL GDLN     W   RTN  G++++  I + +  ++   +PT
Sbjct: 122 ILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPT 173


>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
           protein.
          Length = 1042

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
 Frame = -3

Query: 325 IVIASVYLPPD---KPLLSSDI----ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRR 167
           IVIASVY PP     P   +D+    E   G     IL GD N  H +W C R    G  
Sbjct: 75  IVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTA 134

Query: 166 L-DAFIDDLTFEIVGPPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           L +A   D   EI+     T +P++    PS ID ++ + +    + I + ++L S
Sbjct: 135 LYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSS 190


>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 12/217 (5%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANY-VMVRNDRLXASK 440
           +  +N  G   + +++  +++   + I LV E   + +     +  +   +  +     K
Sbjct: 16  IGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSNALNIKGFHTYLAQNPTSHRK 75

Query: 439 GGTA-IYYRRALHVV--PLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDI 269
           GGTA I  +   H    P++T  +     ++   S       ++A +Y PP     +   
Sbjct: 76  GGTATIVSQNIRHACLNPIETDFMQSAPIALIPSSRIRADMTIVAPIYCPPVYKWTTEQF 135

Query: 268 ESLFGMGDSV-------ILAGDLNCHHTRWNCHRTNVNGRRL-DAFIDDLTFEIVGPPTP 113
             LF   + +       IL GD NC H  W  + +   GR L  + +     +IV     
Sbjct: 136 SKLFNHFEMLLDGKSKFILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195

Query: 112 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           T +P++   +PS +D A+ +    +     +  EL S
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSS 232


>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 12/217 (5%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANY-VMVRNDRLXASK 440
           +  +N  G   + +++  +++   + I LV E   + +     +  +   +  +     K
Sbjct: 16  IGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSNALNIKGFHTYLAQNPTSHRK 75

Query: 439 GGTA-IYYRRALHVV--PLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDI 269
           GGTA I  +   H    P++T  +     ++   S       ++A +Y PP     +   
Sbjct: 76  GGTATIVSQNIRHACLNPIETDFMQSAPIALIPSSRIRADMTIVAPIYCPPVYKWTTEQF 135

Query: 268 ESLFGMGDSV-------ILAGDLNCHHTRWNCHRTNVNGRRL-DAFIDDLTFEIVGPPTP 113
             LF   + +       IL GD NC H  W  + +   GR L  + +     +IV     
Sbjct: 136 SKLFNHFEMLLDGKSKFILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195

Query: 112 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           T +P++   +PS +D A+ +    +     +  EL S
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSS 232


>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 12/217 (5%)
 Frame = -3

Query: 616 LAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANY-VMVRNDRLXASK 440
           +  +N  G   + +++  +++   + I LV E   + +     +  +   +  +     K
Sbjct: 16  IGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSNALNIKGFHTYLAQNPTSHRK 75

Query: 439 GGTA-IYYRRALHVV--PLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDI 269
           GGTA I  +   H    P++T  +     ++   S       ++A +Y PP     +   
Sbjct: 76  GGTATIVSQNIRHACLNPIETDFMQSAPIALIPSSRIRADMTIVAPIYCPPVYKWTTEQF 135

Query: 268 ESLFGMGDSV-------ILAGDLNCHHTRWNCHRTNVNGRRL-DAFIDDLTFEIVGPPTP 113
             LF   + +       IL GD NC H  W  + +   GR L  + +     +IV     
Sbjct: 136 SKLFNHFEMLLDGKSKFILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195

Query: 112 TCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
           T +P++   +PS +D A+ +    +     +  EL S
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSS 232


>U02279-1|AAA18301.1|  964|Drosophila melanogaster protein (
           Drosophila melanogastertelomere-associated transposons
           TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
           cds. ).
          Length = 964

 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
 Frame = -3

Query: 313 SVYLPPD---KPLLSSDI----ESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRL-DA 158
           SVY PP     P   +D+    E   G     IL GD N  H +W C R    G  L +A
Sbjct: 1   SVYCPPSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEA 60

Query: 157 FIDDLTFEIVGPPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELES 2
              D   EI+     T +P++    PS ID ++ + +    + I + ++L S
Sbjct: 61  VQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSSADLSS 112


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
           protein.
          Length = 1219

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 1/173 (0%)
 Frame = -3

Query: 625 SXXLAXYNXXGXXRQRDQIFEFLRDNXVDIXLVQEXCXKPSRRDPKVANYVMVRNDRLXA 446
           S  +  +N  G       +   ++     I  +QE   + +   P   NY ++ N     
Sbjct: 2   SLTIIQWNLKGYLNNYSHLLILIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATNR 61

Query: 445 SKGGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIE 266
             G   + ++   H V   T     I+     I++     + I S Y+ P K + +  + 
Sbjct: 62  FGGVRLLVHKSIQHTVLNIT-----IDIEAIAINIESKLKLNIFSTYISPTKNITNQTLH 116

Query: 265 SLFGMGDSV-ILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGPPTPT 110
           + F +  +  ++ GD N  H  W    TN  G+    FID++   ++   +PT
Sbjct: 117 NTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPT 169


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,706,348
Number of Sequences: 53049
Number of extensions: 626361
Number of successful extensions: 1451
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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