Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0638
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 39 0.004
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 33 0.25
Z78014-2|CAB01429.1| 122|Caenorhabditis elegans Hypothetical pr... 29 2.4
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 29 2.4
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 29 2.4
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 3.1
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z54235-2|CAA90972.2| 371|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 28 7.2
AC024785-1|AAF60598.2| 466|Caenorhabditis elegans C-type lectin... 27 9.5
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = -3
Query: 319 IASVYLPP-----DKPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCHRT-NVNGRRLDA 158
I++VY+PP + L +D ++F I++GD+N HH+ W+ + + GR L
Sbjct: 3 ISNVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAE 62
Query: 157 FID 149
ID
Sbjct: 63 LID 65
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 32.7 bits (71), Expect = 0.25
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 22/152 (14%)
Frame = -3
Query: 565 EFLRDNXVDIXLVQEXCXK---PSR--RDPKVANYVMVRNDRLXA--SKGGTAIYYRRAL 407
EF + +DI L+ E PS P ++ + RN L + S GG A+ ++ +L
Sbjct: 338 EFFASSDIDILLLTETFLSNIVPSSLFNAPNMSFLRLDRNPELHSKVSGGGVAVMHKSSL 397
Query: 406 HVVPLDTPSLSHIEASVCRI----------SLTGHQPIVIASVYLPP-----DKPLLSSD 272
++ D +H C I + + P+ I +Y PP + L +
Sbjct: 398 NITLRDINFETHYPKHRCEILAFDIHNAEPASSASSPLSIFLIYRPPCCSVSENAALIAH 457
Query: 271 IESLFGMGDSVILAGDLNCHHTRWNCHRTNVN 176
+ES + + ILAGDLN W+ ++++
Sbjct: 458 LESYIPLSRT-ILAGDLNFPQINWSSANSSLH 488
>Z78014-2|CAB01429.1| 122|Caenorhabditis elegans Hypothetical
protein F42E8.2 protein.
Length = 122
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 232 AGDLNCHHTRWNCHRTNV 179
A D C H+ WNCH +NV
Sbjct: 94 ATDACCSHSCWNCHHSNV 111
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = -1
Query: 471 WLGMTDSPPPKAGLPFTIGGPCTLSLSILPRSHISRRQCAVXXXXXXXXXXSHPFISPRT 292
W G PPP+ G P P T +S++ + ++ + P SP+
Sbjct: 376 WNGTPPPPPPQYGNPMMFNSPSTFDVSVI-LAPVAPNVTSPSEALGPLGASVFPHFSPQH 434
Query: 291 SPF*AVT 271
+PF A +
Sbjct: 435 APFTATS 441
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = -1
Query: 471 WLGMTDSPPPKAGLPFTIGGPCTLSLSILPRSHISRRQCAVXXXXXXXXXXSHPFISPRT 292
W G PPP+ G P P T +S++ + ++ + P SP+
Sbjct: 376 WNGTPPPPPPQYGNPMMFNSPSTFDVSVI-LAPVAPNVTSPSEALGPLGASVFPHFSPQH 434
Query: 291 SPF*AVT 271
+PF A +
Sbjct: 435 APFTATS 441
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 450 PPPKAGLPFTIGGPCTLSLSILPRSHISRR 361
PPP L I GP T+ L+ +P S+ RR
Sbjct: 508 PPPPPALEQEISGPPTVRLTAVPESNSDRR 537
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 450 PPPKAGLPFTIGGPCTLSLSILPRSHISRR 361
PPP L I GP T+ L+ +P S+ RR
Sbjct: 519 PPPPPALEQEISGPPTVRLTAVPESNSDRR 548
>Z54235-2|CAA90972.2| 371|Caenorhabditis elegans Hypothetical
protein C09G9.2 protein.
Length = 371
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 250 GDSVILAGDLNCHHTRWNCHRTNVNGRRLD 161
G +V++AGD N T W+ N + LD
Sbjct: 179 GTNVVMAGDANGQITMWDLRENNEHSNTLD 208
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 253 CRTVTRCHCSEGACPGG 303
CRT +R C GACP G
Sbjct: 71 CRTQSRSECFMGACPSG 87
>AC024785-1|AAF60598.2| 466|Caenorhabditis elegans C-type lectin
protein 70 protein.
Length = 466
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 232 AGDLNCHHTRWNCHRTNVNGRR--LDAFIDDLTFEIV 128
+G L+ H WN TN NG+R LDA +T E V
Sbjct: 403 SGKLDMHPETWNNPYTNANGKRANLDASGFAMTVEYV 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,235
Number of Sequences: 27780
Number of extensions: 304638
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -