Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0638
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65620.1 68414.m07443 LOB domain protein 6 / lateral organ bo...    29   2.2  
At2g27920.1 68415.m03384 serine carboxypeptidase S10 family prot...    29   3.8  
At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si...    28   5.0  
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con...    28   6.7  

>At1g65620.1 68414.m07443 LOB domain protein 6 / lateral organ
           boundaries domain protein 6 (LBD6) / asymmetric leaves2
           (AS2) identical to SP|O04479 LOB domain protein 6
           (ASYMMETRIC LEAVES2) {Arabidopsis thaliana}
          Length = 199

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -3

Query: 382 SLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLFGMGDSVILAGDLN 218
           S ++   + C+      QP  + + Y PPD+P   +++  +FG  +   L  +L+
Sbjct: 4   SSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELH 58


>At2g27920.1 68415.m03384 serine carboxypeptidase S10 family protein
           similar to retinoid-inducible serine carboxypeptidase
           precursor (GI:15146429) [Mus musculus]
          Length = 461

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 186 VRWQFHLVWWQFKSPARMTESPMP 257
           VR + H+ WW +KSP R+     P
Sbjct: 41  VRPKAHMFWWHYKSPYRVENPSKP 64


>At1g18370.1 68414.m02295 kinesin motor family protein (NACK1)
           similar to kinesin heavy chain isolog GB:AAB63609
           GI:2262101 from [Arabidopsis thaliana]
          Length = 974

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 139 FEIVGPPTPTCYPYNIALRPSTIDLALLRNVTLR 38
           FE   PP   C  Y++A+ PS+ +  L RN   R
Sbjct: 437 FESPDPPVRKCLSYSVAVTPSSENKTLNRNERAR 470


>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
           contains similarity to SKP1 interacting partner 2
           GI:10716949 from [Arabidopsis thaliana]; contains Pfam
           PF00646: F-box domain
          Length = 554

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 475 VMVRNDRLXASKGGTAIYYRRALHVVPLDTPSLSHIEASV 356
           V V+  R   ++G   +  RRAL VV LD P    +E SV
Sbjct: 451 VKVKKCRGVTTQGADLLRKRRALLVVNLDAPETPIVEGSV 490


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,283
Number of Sequences: 28952
Number of extensions: 279188
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)