BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0638 (687 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g65620.1 68414.m07443 LOB domain protein 6 / lateral organ bo... 29 2.2 At2g27920.1 68415.m03384 serine carboxypeptidase S10 family prot... 29 3.8 At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si... 28 5.0 At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 28 6.7 >At1g65620.1 68414.m07443 LOB domain protein 6 / lateral organ boundaries domain protein 6 (LBD6) / asymmetric leaves2 (AS2) identical to SP|O04479 LOB domain protein 6 (ASYMMETRIC LEAVES2) {Arabidopsis thaliana} Length = 199 Score = 29.5 bits (63), Expect = 2.2 Identities = 13/55 (23%), Positives = 27/55 (49%) Frame = -3 Query: 382 SLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLFGMGDSVILAGDLN 218 S ++ + C+ QP + + Y PPD+P +++ +FG + L +L+ Sbjct: 4 SSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELH 58 >At2g27920.1 68415.m03384 serine carboxypeptidase S10 family protein similar to retinoid-inducible serine carboxypeptidase precursor (GI:15146429) [Mus musculus] Length = 461 Score = 28.7 bits (61), Expect = 3.8 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 186 VRWQFHLVWWQFKSPARMTESPMP 257 VR + H+ WW +KSP R+ P Sbjct: 41 VRPKAHMFWWHYKSPYRVENPSKP 64 >At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) similar to kinesin heavy chain isolog GB:AAB63609 GI:2262101 from [Arabidopsis thaliana] Length = 974 Score = 28.3 bits (60), Expect = 5.0 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 139 FEIVGPPTPTCYPYNIALRPSTIDLALLRNVTLR 38 FE PP C Y++A+ PS+ + L RN R Sbjct: 437 FESPDPPVRKCLSYSVAVTPSSENKTLNRNERAR 470 >At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) contains similarity to SKP1 interacting partner 2 GI:10716949 from [Arabidopsis thaliana]; contains Pfam PF00646: F-box domain Length = 554 Score = 27.9 bits (59), Expect = 6.7 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 475 VMVRNDRLXASKGGTAIYYRRALHVVPLDTPSLSHIEASV 356 V V+ R ++G + RRAL VV LD P +E SV Sbjct: 451 VKVKKCRGVTTQGADLLRKRRALLVVNLDAPETPIVEGSV 490 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,518,283 Number of Sequences: 28952 Number of extensions: 279188 Number of successful extensions: 645 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 632 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 645 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1457719448 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -