BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0637 (700 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 55 9e-09 SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.4 SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 3.4 SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 26 4.5 SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 6.0 SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 26 6.0 SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 7.9 >SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 451 Score = 55.2 bits (127), Expect = 9e-09 Identities = 29/94 (30%), Positives = 46/94 (48%) Frame = +3 Query: 408 ILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 587 +L ++ + +LE + D G+ + GYR Q ++ P KGG+RF V +K L Sbjct: 35 VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94 Query: 588 SALMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689 FK A +P GG G +PK S++E+ Sbjct: 95 GFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEI 128 >SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 575 Score = 26.6 bits (56), Expect = 3.4 Identities = 8/13 (61%), Positives = 12/13 (92%) Frame = +3 Query: 429 CDHILEIQFPLRR 467 CDHI+ +Q+PL+R Sbjct: 120 CDHIVNLQYPLKR 132 >SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces pombe|chr 2|||Manual Length = 937 Score = 26.6 bits (56), Expect = 3.4 Identities = 20/44 (45%), Positives = 22/44 (50%) Frame = +3 Query: 525 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAXAGIK 656 TPT G ST +T V+ALS L ACV P G GIK Sbjct: 372 TPTPFGEGKST-LTAGLVQALSNLDKLAIACVRQPSQGPTFGIK 414 >SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 202 Score = 26.2 bits (55), Expect = 4.5 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Frame = -2 Query: 504 RDSLISFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQLDR 325 R+SL +N + AS+ + Q+ +L + S + + + NL+ LRQ Sbjct: 45 RESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCW 104 Query: 324 LGGKNILPCGRTS-DSHL*EYL*AYLE 247 GGK + C TS ++ +YL Y E Sbjct: 105 SGGKRMESCLDTSLSTYERDYLTRYSE 131 >SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizosaccharomyces pombe|chr 2|||Manual Length = 932 Score = 25.8 bits (54), Expect = 6.0 Identities = 22/76 (28%), Positives = 34/76 (44%) Frame = +3 Query: 165 QNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVED 344 QN+++N R+I ++ R Y IP +D A H E F+ R Q Sbjct: 667 QNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAE----HDREIFYEREKQ---R 719 Query: 345 KLVEDLKSRTPIEEKK 392 K V++ K I++KK Sbjct: 720 KEVQERKHEQAIKDKK 735 >SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosaccharomyces pombe|chr 1|||Manual Length = 558 Score = 25.8 bits (54), Expect = 6.0 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -2 Query: 507 VRDSLISFRNRQNRASEEIES-QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQ 334 ++D + + + + + EIES + + + EYR LS + + VSL S + Q R+ Sbjct: 287 IKDYVSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVSKHVSLVSEISQVVQRE 345 >SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1220 Score = 25.4 bits (53), Expect = 7.9 Identities = 14/40 (35%), Positives = 16/40 (40%) Frame = +3 Query: 534 KGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAXAGI 653 KGG F + D A S T C +PFG GI Sbjct: 1179 KGGFNFDFSSSTDTYAATSYAYTATCTQSFLPFGLGNGGI 1218 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,919,783 Number of Sequences: 5004 Number of extensions: 60939 Number of successful extensions: 165 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 165 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -