Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0637
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 77 1e-14
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 75 4e-14
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 75 7e-14
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 52 4e-07
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 30 1.5
07_03_0507 - 18871260-18871361,18871444-18871560,18871792-188721... 28 8.2
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688... 28 8.2
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 28 8.2
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/83 (43%), Positives = 49/83 (59%)
Frame = +3
Query: 441 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 620
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 621 DVPFGGAXAGIKINPKEYSEHEL 689
VP+GGA GI P E S EL
Sbjct: 95 AVPYGGAKGGIGCTPGELSRSEL 117
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/83 (42%), Positives = 49/83 (59%)
Frame = +3
Query: 441 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 620
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 621 DVPFGGAXAGIKINPKEYSEHEL 689
+P+GGA GI P E S EL
Sbjct: 95 AIPYGGAKGGIGCAPGELSTSEL 117
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 74.5 bits (175), Expect = 7e-14
Identities = 34/83 (40%), Positives = 51/83 (61%)
Frame = +3
Query: 441 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 620
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVA 94
Query: 621 DVPFGGAXAGIKINPKEYSEHEL 689
++P+GGA GI +P + S EL
Sbjct: 95 NIPYGGAKGGIGCSPGDLSISEL 117
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 52.0 bits (119), Expect = 4e-07
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +3
Query: 354 EDLKSRTPIEEKKKKVAGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTP 530
E + S P+ K + IL +L+EP + + P D G+ + G+R Q S P
Sbjct: 220 EVVHSLEPVLVKNSQHVQILERLLEP-ERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGP 278
Query: 531 TKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689
+GG+RF +T K L+ T K A GGA G +PK SE E+
Sbjct: 279 CRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEI 331
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/88 (22%), Positives = 37/88 (42%)
Frame = +3
Query: 297 HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSG 476
H F + V ED + + + +E K+KV + E + ++ ++ + G
Sbjct: 642 HSGRAMFDKEIAVEEDIFILEEIGKLAMECLKEKVEERPDMKEVAERLVMLRRARKHGQG 701
Query: 477 DYEMILGYRAQHSTHRTPTKGGIRFSTD 560
Y + + + S TPT G FST+
Sbjct: 702 SYNLSPRHHEEISIETTPTSFGADFSTN 729
>07_03_0507 -
18871260-18871361,18871444-18871560,18871792-18872120,
18872704-18872871,18873592-18873685,18873707-18873766,
18874702-18874762,18875258-18875319,18875729-18875856,
18876783-18876852,18877472-18877630
Length = 449
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 576 LHLWLRPLR-IEYLLWLESCVWNVVRDS 496
LH +LRPL + Y W+ V NV+RD+
Sbjct: 281 LHNFLRPLLFLMYSFWVPQIVTNVIRDT 308
>03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,
68871-69005,69131-69310,69495-69701,69821-69943,
70240-70359,70758-70880,72067-72171,72254-72398,
73443-73607,73669-73907,74452-74484,74977-75058,
75200-75360,75739-75951,76789-76971,77051-77220,
77375-77474
Length = 1021
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 576 LHLWLRPLRIEYLLWLESCVWNVVRDSLISFRNRQNRASE 457
++L L P++ L WN+V D+ ++F NR++ E
Sbjct: 905 VYLLLDPMKFAVRYGLSGKAWNLVIDNKVAFTNRKDFGRE 944
>02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +3
Query: 297 HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDS 473
H F AC ++ KLV+ L +EE+ +L L+ LE +PL++D+
Sbjct: 882 HGCNTFQPLACSILATKLVDSLSYDRVLEERVLASLSLLNLVRH-PECLEKLYPLKKDT 939
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,654,723
Number of Sequences: 37544
Number of extensions: 384046
Number of successful extensions: 912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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