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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0637
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595...    77   1e-14
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093...    75   4e-14
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259...    75   7e-14
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168...    52   4e-07
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454           30   1.5  
07_03_0507 - 18871260-18871361,18871444-18871560,18871792-188721...    28   8.2  
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688...    28   8.2  
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369...    28   8.2  

>02_05_0144 +
           26258841-26258948,26259099-26259212,26259335-26259556,
           26259660-26259734,26259827-26259943,26260046-26260296,
           26260833-26260908,26261045-26261131,26261216-26261401
          Length = 411

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/83 (43%), Positives = 49/83 (59%)
 Frame = +3

Query: 441 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 620
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  DEV AL+ LMT+K A  
Sbjct: 35  IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94

Query: 621 DVPFGGAXAGIKINPKEYSEHEL 689
            VP+GGA  GI   P E S  EL
Sbjct: 95  AVPYGGAKGGIGCTPGELSRSEL 117


>04_04_0678 +
           27207340-27207447,27207555-27207668,27209111-27209332,
           27209407-27209481,27209569-27209685,27210145-27210395,
           27210686-27210761,27210862-27210948,27211037-27211222
          Length = 411

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 35/83 (42%), Positives = 49/83 (59%)
 Frame = +3

Query: 441 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 620
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  DEV AL+ LMT+K A  
Sbjct: 35  IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94

Query: 621 DVPFGGAXAGIKINPKEYSEHEL 689
            +P+GGA  GI   P E S  EL
Sbjct: 95  AIPYGGAKGGIGCAPGELSTSEL 117


>03_06_0282 -
           32824950-32825135,32825247-32825505,32825651-32825901,
           32826309-32826425,32826613-32826687,32826788-32827009,
           32827396-32827509,32827694-32827801
          Length = 443

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 34/83 (40%), Positives = 51/83 (61%)
 Frame = +3

Query: 441 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 620
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  DEV AL+ LMT+K A  
Sbjct: 35  IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVA 94

Query: 621 DVPFGGAXAGIKINPKEYSEHEL 689
           ++P+GGA  GI  +P + S  EL
Sbjct: 95  NIPYGGAKGGIGCSPGDLSISEL 117


>01_05_0337 +
           21115388-21115961,21116471-21116597,21116683-21116884,
           21117460-21117546,21117622-21117681,21117800-21117886,
           21118451-21118522,21118675-21118730,21118812-21118897,
           21119427-21119517,21119593-21119750,21119827-21119918,
           21120110-21120190,21120282-21120479
          Length = 656

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
 Frame = +3

Query: 354 EDLKSRTPIEEKKKKVAGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTP 530
           E + S  P+  K  +   IL +L+EP +     + P   D G+  +  G+R Q S    P
Sbjct: 220 EVVHSLEPVLVKNSQHVQILERLLEP-ERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGP 278

Query: 531 TKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689
            +GG+RF   +T    K L+   T K A      GGA  G   +PK  SE E+
Sbjct: 279 CRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEI 331


>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
          Length = 748

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/88 (22%), Positives = 37/88 (42%)
 Frame = +3

Query: 297 HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSG 476
           H     F +   V ED  + +   +  +E  K+KV     + E  + ++ ++   +   G
Sbjct: 642 HSGRAMFDKEIAVEEDIFILEEIGKLAMECLKEKVEERPDMKEVAERLVMLRRARKHGQG 701

Query: 477 DYEMILGYRAQHSTHRTPTKGGIRFSTD 560
            Y +   +  + S   TPT  G  FST+
Sbjct: 702 SYNLSPRHHEEISIETTPTSFGADFSTN 729


>07_03_0507 -
           18871260-18871361,18871444-18871560,18871792-18872120,
           18872704-18872871,18873592-18873685,18873707-18873766,
           18874702-18874762,18875258-18875319,18875729-18875856,
           18876783-18876852,18877472-18877630
          Length = 449

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 576 LHLWLRPLR-IEYLLWLESCVWNVVRDS 496
           LH +LRPL  + Y  W+   V NV+RD+
Sbjct: 281 LHNFLRPLLFLMYSFWVPQIVTNVIRDT 308


>03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,
            68871-69005,69131-69310,69495-69701,69821-69943,
            70240-70359,70758-70880,72067-72171,72254-72398,
            73443-73607,73669-73907,74452-74484,74977-75058,
            75200-75360,75739-75951,76789-76971,77051-77220,
            77375-77474
          Length = 1021

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 576  LHLWLRPLRIEYLLWLESCVWNVVRDSLISFRNRQNRASE 457
            ++L L P++      L    WN+V D+ ++F NR++   E
Sbjct: 905  VYLLLDPMKFAVRYGLSGKAWNLVIDNKVAFTNRKDFGRE 944


>02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,
            3697214-3698062,3698193-3698337,3698426-3698677,
            3698780-3699089,3699415-3699524
          Length = 962

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 297  HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDS 473
            H    F   AC ++  KLV+ L     +EE+      +L L+      LE  +PL++D+
Sbjct: 882  HGCNTFQPLACSILATKLVDSLSYDRVLEERVLASLSLLNLVRH-PECLEKLYPLKKDT 939


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,654,723
Number of Sequences: 37544
Number of extensions: 384046
Number of successful extensions: 912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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