Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0637
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 152 2e-37
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 52 4e-07
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 52 4e-07
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08) 37 0.018
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4) 35 0.055
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25) 34 0.13
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26) 31 0.68
SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 152 bits (369), Expect = 2e-37
Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 4/147 (2%)
Frame = +3
Query: 267 IPTSANPKFFHMVEYFFHRACQVVEDKLVE--DLKSRTP--IEEKKKKVAGILKLMEPCD 434
+ + P F M FF +A VE +L+ D + P E+KK ++ GIL +M+PC
Sbjct: 38 VESDTEPSFTEMCAGFFDQARTYVEHRLLTRPDPPGKIPEKFEDKKHRIKGILDVMKPCQ 97
Query: 435 HILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCA 614
+L + FP++ D+G+Y+++ GYRAQHS HR+P KGGIR+S DV DEV+AL+ LMTFKCA
Sbjct: 98 DVLSVVFPIKLDNGEYKLVQGYRAQHSHHRSPCKGGIRYSEDVDIDEVQALATLMTFKCA 157
Query: 615 CVDVPFGGAXAGIKINPKEYSEHELGK 695
VDVPFGGA GIKI+P ++S EL K
Sbjct: 158 VVDVPFGGAKGGIKIDPSQHSVTELEK 184
>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 448
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 402 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEV 578
A IL +++EP + ++ + P R DS + + G+R + ++ P KGG+RF V +
Sbjct: 47 ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGIL 105
Query: 579 KALSALMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689
K L K + +P GG G +PK S+HE+
Sbjct: 106 KFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEV 142
>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 486
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 402 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEV 578
A IL +++EP + ++ + P R DS + + G+R + ++ P KGG+RF V +
Sbjct: 85 ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGIL 143
Query: 579 KALSALMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689
K L K + +P GG G +PK S+HE+
Sbjct: 144 KFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEV 180
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/92 (28%), Positives = 47/92 (51%)
Frame = +3
Query: 414 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSA 593
+++EP + +L + P D G+ ++ GYR + ++ P KGG+RF V +K L
Sbjct: 379 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSVNLGILKFLGF 437
Query: 594 LMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689
K + +P GG G +PK +++E+
Sbjct: 438 EQVLKNSLTTLPMGGGKGGSNFDPKGKTDNEV 469
>SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)
Length = 131
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 414 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 587
+++EP + +L + P D G+ ++ GYR + ++ P KGG+RF V +K L
Sbjct: 71 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSVNLGILKFL 127
>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
Length = 582
Score = 35.1 bits (77), Expect = 0.055
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +3
Query: 228 TYASHEIPDKLKDIPTSANPKFFHMVEYFFHR--ACQVVEDKLVEDLKSRTPIEEKKKKV 401
TY+ E+ D L++ +S FH+ + HR +++ + V+D K +TP E KK
Sbjct: 334 TYSQSELMD-LRNNSSSLTD--FHI--FCLHRWLPANLLKPEAVKDAKKQTPDLEFKKWT 388
Query: 402 AGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRT 527
GIL I E+ PL+R+ + Y+AQ H T
Sbjct: 389 KGILDHAGTVSAISEVIEPLKRNLTELFKAQDYQAQPLDHLT 430
>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
Length = 312
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 159 SVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSA 281
+V +A+NT ++ +N CCRT + I K +PT A
Sbjct: 251 TVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCKTVPTKA 291
>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
Length = 889
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 594 KLITP*LHLWLRPLRIEYLLWLESCVWNVVRDSLISFRN--RQNRASEEIESQ 442
++I P WL L I LLW CV+ ++RDS ++ S EI+S+
Sbjct: 413 QVILPEFAYWLCLLTISLLLWQPLCVYTLLRDSHTMLKSPLASQLGSREIDSR 465
>SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 329 TGSVEKIFYHVEELRIRTCRNIFELIWNLMTSVCAAADIHSSWYDSEHCIEGF 171
TG+V +YH +L I + NI W VC D ++Y S++ I+ F
Sbjct: 203 TGAVYTDYYHDSDLTIGSVLNI----WGRKFQVCDCDDFTKAYYKSKYGIDSF 251
>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +2
Query: 302 GRIFFPPSLSSCRRQAC*RFEVKDTH*RE-EKESSRYSKTYGTMRSHS*DSISSEARFWR 478
GR F P S++ RQ R+E RE E E K + + +F R
Sbjct: 214 GRDFGPHSINVHERQCAKRWEANKKQQREIEDEKKAREKKREPWKEPVFPPLRRHEQFTR 273
Query: 479 LRNDIRLSRTTFHTQDSNQRRYSI 550
+DIR R + H + + YS+
Sbjct: 274 SLHDIRAKRDSLHLEFEKELLYSL 297
>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 260 QRYSYKCESEVLPHGRIFFPPSLSSC 337
QR YK SE HGR FP SL C
Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188
>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +3
Query: 150 LKNSVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRAC 329
+K N+ T+ I+P + RTY DK+ +IP+ F + E F
Sbjct: 194 MKRFGDNDLYTTLGYILPTHLLSMARTYEKRRKMDKVTEIPS-----FLALDELEFFEPF 248
Query: 330 QVV---EDKLVEDLKS 368
V+ +D V DLKS
Sbjct: 249 PVIDGNDDVFVHDLKS 264
>SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 117 DAAWWLIMLSTTIGLGIGSPYT 52
DA WW ++ TT+G G P T
Sbjct: 462 DAFWWAVVTMTTVGYGDMRPIT 483
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,388,879
Number of Sequences: 59808
Number of extensions: 441073
Number of successful extensions: 1005
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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