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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0637
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)            152   2e-37
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               52   4e-07
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               52   4e-07
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)       37   0.018
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)                      35   0.055
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)               34   0.13 
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           31   0.68 
SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score =  152 bits (369), Expect = 2e-37
 Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 4/147 (2%)
 Frame = +3

Query: 267 IPTSANPKFFHMVEYFFHRACQVVEDKLVE--DLKSRTP--IEEKKKKVAGILKLMEPCD 434
           + +   P F  M   FF +A   VE +L+   D   + P   E+KK ++ GIL +M+PC 
Sbjct: 38  VESDTEPSFTEMCAGFFDQARTYVEHRLLTRPDPPGKIPEKFEDKKHRIKGILDVMKPCQ 97

Query: 435 HILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCA 614
            +L + FP++ D+G+Y+++ GYRAQHS HR+P KGGIR+S DV  DEV+AL+ LMTFKCA
Sbjct: 98  DVLSVVFPIKLDNGEYKLVQGYRAQHSHHRSPCKGGIRYSEDVDIDEVQALATLMTFKCA 157

Query: 615 CVDVPFGGAXAGIKINPKEYSEHELGK 695
            VDVPFGGA  GIKI+P ++S  EL K
Sbjct: 158 VVDVPFGGAKGGIKIDPSQHSVTELEK 184


>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 448

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +3

Query: 402 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEV 578
           A IL +++EP + ++  + P R DS +  +  G+R + ++   P KGG+RF   V    +
Sbjct: 47  ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGIL 105

Query: 579 KALSALMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689
           K L      K +   +P GG   G   +PK  S+HE+
Sbjct: 106 KFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEV 142


>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 486

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +3

Query: 402 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEV 578
           A IL +++EP + ++  + P R DS +  +  G+R + ++   P KGG+RF   V    +
Sbjct: 85  ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGIL 143

Query: 579 KALSALMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689
           K L      K +   +P GG   G   +PK  S+HE+
Sbjct: 144 KFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEV 180


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 26/92 (28%), Positives = 47/92 (51%)
 Frame = +3

Query: 414 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSA 593
           +++EP + +L  + P   D G+ ++  GYR + ++   P KGG+RF   V    +K L  
Sbjct: 379 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSVNLGILKFLGF 437

Query: 594 LMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689
               K +   +P GG   G   +PK  +++E+
Sbjct: 438 EQVLKNSLTTLPMGGGKGGSNFDPKGKTDNEV 469


>SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)
          Length = 131

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +3

Query: 414 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 587
           +++EP + +L  + P   D G+ ++  GYR + ++   P KGG+RF   V    +K L
Sbjct: 71  RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSVNLGILKFL 127


>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
          Length = 582

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = +3

Query: 228 TYASHEIPDKLKDIPTSANPKFFHMVEYFFHR--ACQVVEDKLVEDLKSRTPIEEKKKKV 401
           TY+  E+ D L++  +S     FH+  +  HR     +++ + V+D K +TP  E KK  
Sbjct: 334 TYSQSELMD-LRNNSSSLTD--FHI--FCLHRWLPANLLKPEAVKDAKKQTPDLEFKKWT 388

Query: 402 AGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRT 527
            GIL        I E+  PL+R+  +      Y+AQ   H T
Sbjct: 389 KGILDHAGTVSAISEVIEPLKRNLTELFKAQDYQAQPLDHLT 430


>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
          Length = 312

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 159 SVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSA 281
           +V  +A+NT   ++   +N CCRT  +  I    K +PT A
Sbjct: 251 TVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCKTVPTKA 291


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 594 KLITP*LHLWLRPLRIEYLLWLESCVWNVVRDSLISFRN--RQNRASEEIESQ 442
           ++I P    WL  L I  LLW   CV+ ++RDS    ++       S EI+S+
Sbjct: 413 QVILPEFAYWLCLLTISLLLWQPLCVYTLLRDSHTMLKSPLASQLGSREIDSR 465


>SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 329 TGSVEKIFYHVEELRIRTCRNIFELIWNLMTSVCAAADIHSSWYDSEHCIEGF 171
           TG+V   +YH  +L I +  NI    W     VC   D   ++Y S++ I+ F
Sbjct: 203 TGAVYTDYYHDSDLTIGSVLNI----WGRKFQVCDCDDFTKAYYKSKYGIDSF 251


>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +2

Query: 302 GRIFFPPSLSSCRRQAC*RFEVKDTH*RE-EKESSRYSKTYGTMRSHS*DSISSEARFWR 478
           GR F P S++   RQ   R+E      RE E E     K     +      +    +F R
Sbjct: 214 GRDFGPHSINVHERQCAKRWEANKKQQREIEDEKKAREKKREPWKEPVFPPLRRHEQFTR 273

Query: 479 LRNDIRLSRTTFHTQDSNQRRYSI 550
             +DIR  R + H +   +  YS+
Sbjct: 274 SLHDIRAKRDSLHLEFEKELLYSL 297


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 260 QRYSYKCESEVLPHGRIFFPPSLSSC 337
           QR  YK  SE   HGR  FP SL  C
Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188


>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +3

Query: 150 LKNSVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRAC 329
           +K    N+   T+  I+P  +    RTY      DK+ +IP+     F  + E  F    
Sbjct: 194 MKRFGDNDLYTTLGYILPTHLLSMARTYEKRRKMDKVTEIPS-----FLALDELEFFEPF 248

Query: 330 QVV---EDKLVEDLKS 368
            V+   +D  V DLKS
Sbjct: 249 PVIDGNDDVFVHDLKS 264


>SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 117 DAAWWLIMLSTTIGLGIGSPYT 52
           DA WW ++  TT+G G   P T
Sbjct: 462 DAFWWAVVTMTTVGYGDMRPIT 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,388,879
Number of Sequences: 59808
Number of extensions: 441073
Number of successful extensions: 1005
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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