BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0637 (700 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 152 2e-37 SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 52 4e-07 SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 52 4e-07 SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07 SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08) 37 0.018 SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4) 35 0.055 SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25) 34 0.13 SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26) 31 0.68 SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90 SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7 SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 >SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) Length = 520 Score = 152 bits (369), Expect = 2e-37 Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 4/147 (2%) Frame = +3 Query: 267 IPTSANPKFFHMVEYFFHRACQVVEDKLVE--DLKSRTP--IEEKKKKVAGILKLMEPCD 434 + + P F M FF +A VE +L+ D + P E+KK ++ GIL +M+PC Sbjct: 38 VESDTEPSFTEMCAGFFDQARTYVEHRLLTRPDPPGKIPEKFEDKKHRIKGILDVMKPCQ 97 Query: 435 HILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCA 614 +L + FP++ D+G+Y+++ GYRAQHS HR+P KGGIR+S DV DEV+AL+ LMTFKCA Sbjct: 98 DVLSVVFPIKLDNGEYKLVQGYRAQHSHHRSPCKGGIRYSEDVDIDEVQALATLMTFKCA 157 Query: 615 CVDVPFGGAXAGIKINPKEYSEHELGK 695 VDVPFGGA GIKI+P ++S EL K Sbjct: 158 VVDVPFGGAKGGIKIDPSQHSVTELEK 184 >SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) Length = 448 Score = 52.0 bits (119), Expect = 4e-07 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Frame = +3 Query: 402 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEV 578 A IL +++EP + ++ + P R DS + + G+R + ++ P KGG+RF V + Sbjct: 47 ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGIL 105 Query: 579 KALSALMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689 K L K + +P GG G +PK S+HE+ Sbjct: 106 KFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEV 142 >SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) Length = 486 Score = 52.0 bits (119), Expect = 4e-07 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Frame = +3 Query: 402 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEV 578 A IL +++EP + ++ + P R DS + + G+R + ++ P KGG+RF V + Sbjct: 85 ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGIL 143 Query: 579 KALSALMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689 K L K + +P GG G +PK S+HE+ Sbjct: 144 KFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEV 180 >SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 997 Score = 52.0 bits (119), Expect = 4e-07 Identities = 26/92 (28%), Positives = 47/92 (51%) Frame = +3 Query: 414 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSA 593 +++EP + +L + P D G+ ++ GYR + ++ P KGG+RF V +K L Sbjct: 379 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSVNLGILKFLGF 437 Query: 594 LMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689 K + +P GG G +PK +++E+ Sbjct: 438 EQVLKNSLTTLPMGGGKGGSNFDPKGKTDNEV 469 >SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08) Length = 131 Score = 36.7 bits (81), Expect = 0.018 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +3 Query: 414 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 587 +++EP + +L + P D G+ ++ GYR + ++ P KGG+RF V +K L Sbjct: 71 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSVNLGILKFL 127 >SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4) Length = 582 Score = 35.1 bits (77), Expect = 0.055 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Frame = +3 Query: 228 TYASHEIPDKLKDIPTSANPKFFHMVEYFFHR--ACQVVEDKLVEDLKSRTPIEEKKKKV 401 TY+ E+ D L++ +S FH+ + HR +++ + V+D K +TP E KK Sbjct: 334 TYSQSELMD-LRNNSSSLTD--FHI--FCLHRWLPANLLKPEAVKDAKKQTPDLEFKKWT 388 Query: 402 AGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRT 527 GIL I E+ PL+R+ + Y+AQ H T Sbjct: 389 KGILDHAGTVSAISEVIEPLKRNLTELFKAQDYQAQPLDHLT 430 >SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25) Length = 312 Score = 33.9 bits (74), Expect = 0.13 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 159 SVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSA 281 +V +A+NT ++ +N CCRT + I K +PT A Sbjct: 251 TVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCKTVPTKA 291 >SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26) Length = 889 Score = 31.5 bits (68), Expect = 0.68 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = -2 Query: 594 KLITP*LHLWLRPLRIEYLLWLESCVWNVVRDSLISFRN--RQNRASEEIESQ 442 ++I P WL L I LLW CV+ ++RDS ++ S EI+S+ Sbjct: 413 QVILPEFAYWLCLLTISLLLWQPLCVYTLLRDSHTMLKSPLASQLGSREIDSR 465 >SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 455 Score = 31.1 bits (67), Expect = 0.90 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 Query: 329 TGSVEKIFYHVEELRIRTCRNIFELIWNLMTSVCAAADIHSSWYDSEHCIEGF 171 TG+V +YH +L I + NI W VC D ++Y S++ I+ F Sbjct: 203 TGAVYTDYYHDSDLTIGSVLNI----WGRKFQVCDCDDFTKAYYKSKYGIDSF 251 >SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 704 Score = 30.7 bits (66), Expect = 1.2 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Frame = +2 Query: 302 GRIFFPPSLSSCRRQAC*RFEVKDTH*RE-EKESSRYSKTYGTMRSHS*DSISSEARFWR 478 GR F P S++ RQ R+E RE E E K + + +F R Sbjct: 214 GRDFGPHSINVHERQCAKRWEANKKQQREIEDEKKAREKKREPWKEPVFPPLRRHEQFTR 273 Query: 479 LRNDIRLSRTTFHTQDSNQRRYSI 550 +DIR R + H + + YS+ Sbjct: 274 SLHDIRAKRDSLHLEFEKELLYSL 297 >SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 579 Score = 29.5 bits (63), Expect = 2.7 Identities = 14/26 (53%), Positives = 14/26 (53%) Frame = +2 Query: 260 QRYSYKCESEVLPHGRIFFPPSLSSC 337 QR YK SE HGR FP SL C Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188 >SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 522 Score = 27.9 bits (59), Expect = 8.4 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Frame = +3 Query: 150 LKNSVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRAC 329 +K N+ T+ I+P + RTY DK+ +IP+ F + E F Sbjct: 194 MKRFGDNDLYTTLGYILPTHLLSMARTYEKRRKMDKVTEIPS-----FLALDELEFFEPF 248 Query: 330 QVV---EDKLVEDLKS 368 V+ +D V DLKS Sbjct: 249 PVIDGNDDVFVHDLKS 264 >SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 626 Score = 27.9 bits (59), Expect = 8.4 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -2 Query: 117 DAAWWLIMLSTTIGLGIGSPYT 52 DA WW ++ TT+G G P T Sbjct: 462 DAFWWAVVTMTTVGYGDMRPIT 483 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,388,879 Number of Sequences: 59808 Number of extensions: 441073 Number of successful extensions: 1005 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 963 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1004 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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