Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0637
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...   180   7e-46
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AF000299-10|AAC47986.1|  338|Caenorhabditis elegans Seven tm rec...    30   1.4  
Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassi...    28   7.4  
AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical pr...    27   9.8  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    27   9.8  

>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score =  180 bits (439), Expect = 7e-46
 Identities = 81/155 (52%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
 Frame = +3

Query: 234 ASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKK-VAGI 410
           A  ++ D+ K +    NP F+ MV+++F++  +V+  KL E+LKS +  ++ KK  V+GI
Sbjct: 24  AHSQVLDEQKPMEEQVNPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNLVSGI 83

Query: 411 LKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALS 590
           L  ++P + +L I FP+RRD+G++E+I  +RAQHS HRTPTKGGIR+S DV  DEVKALS
Sbjct: 84  LGAIKPVNKVLYITFPIRRDNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCEDEVKALS 143

Query: 591 ALMTFKCACVDVPFGGAXAGIKINPKEYSEHELGK 695
           ALMT+KCA VDVPFGGA  G+KI+PK+Y+++E+ K
Sbjct: 144 ALMTYKCAVVDVPFGGAKGGVKIDPKQYTDYEIEK 178


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical
           protein T28D9.7 protein.
          Length = 982

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
 Frame = +3

Query: 153 KNSVQNEAL--NTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRA 326
           ++ V+ E L  N  F  +  G    C    S  I  + K     AN  FF + E  F+R 
Sbjct: 443 EDDVEQEELDENVSFSTVSGGETFSCED-KSRPITSEEK----KANQMFFLLDETAFNR- 496

Query: 327 CQVVEDKLVEDLKSR--TPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDY 482
                   V DLKSR    +++  +++A IL++ME   H+      +R  +GD+
Sbjct: 497 -NATRYMSVGDLKSRYGDKVDDVAEEIAVILRIMEKLWHVFMPDSYIRTMTGDF 549


>AF000299-10|AAC47986.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 162 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 521 VCGMLCAIA*YHFVIARIAPQRKLNLKNVIAWF 423
           +CG+L  +   HF+    A QRK NLK    W+
Sbjct: 95  ICGVLMPMFVVHFIFRYFAMQRKGNLKYFEGWY 127


>Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical
           protein R186.5 protein.
          Length = 479

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 108 WWLIMLSTTIGLGIGSPYTY 49
           WW I+  TTIG G  +P+TY
Sbjct: 368 WWAIVTMTTIGYGDITPHTY 387


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
           protein W06A7.3f protein.
          Length = 2488

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 375 PIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 494
           PIE  +++   + K  E CDH+++ Q  L R S   E I+
Sbjct: 444 PIENSEQETVAV-KATESCDHVVDSQKTLERASSLEEDIM 482


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
           protein W06A7.3c protein.
          Length = 2484

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 375 PIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 494
           PIE  +++   + K  E CDH+++ Q  L R S   E I+
Sbjct: 444 PIENSEQETVAV-KATESCDHVVDSQKTLERASSLEEDIM 482


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
           protein W06A7.3a protein.
          Length = 2607

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 375 PIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 494
           PIE  +++   + K  E CDH+++ Q  L R S   E I+
Sbjct: 444 PIENSEQETVAV-KATESCDHVVDSQKTLERASSLEEDIM 482


>AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassium
           channel protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 117 DAAWWLIMLSTTIGLGIGSPYTY 49
           DA WW ++  TTIG G   P T+
Sbjct: 214 DALWWGVITMTTIGYGDVVPQTW 236


>AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical
           protein Y54G9A.3 protein.
          Length = 621

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 117 DAAWWLIMLSTTIGLGIGSPYTY 49
           DA WW ++  TTIG G   P T+
Sbjct: 255 DALWWGVITMTTIGYGDVVPQTW 277


>Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 342 DKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 494
           +KL E L        K  +++  + L +P D    I FP R  S  YEM++
Sbjct: 137 EKLNEQLADTNNRPFKDIRISHTIVLDDPFDEDARISFPPRSPSPTYEMLV 187


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
            protein F11C3.3 protein.
          Length = 1963

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 243  EIPDKLKDIPTSANPKFFHM--VEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILK 416
            EI  KL +   S   K  H   V+    +    +ED L  + ++R  ++++K+KV G LK
Sbjct: 1010 EINRKLMEDLQSEEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQKRKVEGELK 1069

Query: 417  LME 425
            + +
Sbjct: 1070 IAQ 1072


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
            F11C3.3 protein.
          Length = 1963

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 243  EIPDKLKDIPTSANPKFFHM--VEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILK 416
            EI  KL +   S   K  H   V+    +    +ED L  + ++R  ++++K+KV G LK
Sbjct: 1010 EINRKLMEDLQSEEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQKRKVEGELK 1069

Query: 417  LME 425
            + +
Sbjct: 1070 IAQ 1072


>Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 342 DKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 494
           +KL E L        K  +++  + L +P D    I FP R  S  YEM++
Sbjct: 137 EKLNEQLADTNNRPFKDIRISHTIVLDDPFDEDARISFPPRSPSPTYEMLV 187


>Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical
           protein F39H2.2b protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 342 DKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 494
           +KL E L        K  +++  + L +P D    I FP R  S  YEM++
Sbjct: 68  EKLNEQLADTNNRPFKDIRISHTIVLDDPFDEDARISFPPRSPSPTYEMLV 118


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
            protein.
          Length = 1966

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 243  EIPDKLKDIPTSANPKFFHM--VEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILK 416
            EI  KL +   S   K  H   V+    +    +ED L  + ++R  ++++K+KV G LK
Sbjct: 1013 EINRKLMEDLQSEEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQKRKVEGELK 1072

Query: 417  LME 425
            + +
Sbjct: 1073 IAQ 1075


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,102,963
Number of Sequences: 27780
Number of extensions: 342078
Number of successful extensions: 919
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)