Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0637
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi... 79 4e-15
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil... 77 1e-14
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi... 75 5e-14
At1g51720.1 68414.m05828 glutamate dehydrogenase, putative simil... 48 6e-06
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p... 29 2.2
At5g37110.1 68418.m04454 hypothetical protein 29 3.0
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro... 27 9.0
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 27 9.0
At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138... 27 9.0
>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
thaliana] SWISS-PROT:Q38946
Length = 411
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/83 (42%), Positives = 52/83 (62%)
Frame = +3
Query: 441 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 620
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLVSYIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 621 DVPFGGAXAGIKINPKEYSEHEL 689
D+P+GGA GI +P++ S EL
Sbjct: 95 DIPYGGAKGGIGCSPRDLSLSEL 117
>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/83 (42%), Positives = 50/83 (60%)
Frame = +3
Query: 441 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 620
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVA 94
Query: 621 DVPFGGAXAGIKINPKEYSEHEL 689
+P+GGA GI +P E S EL
Sbjct: 95 KIPYGGAKGGIGCDPSELSLSEL 117
>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +3
Query: 441 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 620
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 621 DVPFGGAXAGIKINPKEYSEHEL 689
+P+GGA GI +P + S EL
Sbjct: 95 KIPYGGAKGGIGCDPSKLSISEL 117
>At1g51720.1 68414.m05828 glutamate dehydrogenase, putative similar
to NADP-specific glutatamate dehydrogenase (NADP-GDH)
SP:P28724 [Giardia lamblia (Giardia intestinalis)]
Length = 637
Score = 48.0 bits (109), Expect = 6e-06
Identities = 28/92 (30%), Positives = 44/92 (47%)
Frame = +3
Query: 414 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSA 593
+L+EP + ++ + P D G+ + G+R Q + P +GGIRF + K L
Sbjct: 238 RLLEP-ERMIVFRVPWIDDRGETHVNRGFRVQFNQALGPCRGGIRFHPSMNLSIAKFLGF 296
Query: 594 LMTFKCACVDVPFGGAXAGIKINPKEYSEHEL 689
T K A GGA G +PK S++E+
Sbjct: 297 QQTLKNALSPYKLGGASGGSDFDPKGKSDNEI 328
>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
protein (GI:507127) [Streptococcus pyogenes]
Length = 509
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 318 HRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMILG 497
HR+ VV++ + ++K + + K + I + E + + RR++ DYE LG
Sbjct: 422 HRSYAVVDEMVTREVKKDPAVRQVYKLLTSIHSIFEQISEKILMTDRFRRETVDYEKKLG 481
>At5g37110.1 68418.m04454 hypothetical protein
Length = 1307
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +3
Query: 237 SHEIPDKLKDIPTSANPKFFHMV-EYFFHRACQVVEDK--LVEDLKSRTPIEEKKKKVAG 407
S EIPDKLKD P+ F ++ E H C VV K +E+ K RT +KK
Sbjct: 532 SAEIPDKLKD------PELFEVIKESMVHGPCGVVNPKCPCMENGKRRTDDFVEKKDFKC 585
Query: 408 ILKLMEPCDHILEIQF 455
+ + P + L +++
Sbjct: 586 DNRYVIPYNRSLSLRY 601
>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
protein
Length = 210
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 104 HHAASQEYRQVSGSAAQEFCSK*SPQ--YNVPNHTSW 208
H+ + QVSG+ EFC SP+ YN + SW
Sbjct: 38 HNHNLNDVTQVSGALEYEFCDSSSPKAVYNPGHDISW 74
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 573 HLWLRP-LRIEYLLWLESCVWNVVRDS 496
H ++RP L + Y W+ V NVVRDS
Sbjct: 392 HNYMRPILLLMYSFWIPQIVANVVRDS 418
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 573 HLWLRP-LRIEYLLWLESCVWNVVRDS 496
H ++RP L + Y W+ V NVVRDS
Sbjct: 392 HNYMRPILLLMYSFWIPQIVANVVRDS 418
>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
putative contains Pfam profiles PF00005: ABC
transporter, PF00664: ABC transporter transmembrane
region
Length = 1488
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 162 VQNEAL-NTMFRIIPAGVNVCCRTYAS 239
+ NE+L N + +P GVN+C YAS
Sbjct: 207 LNNESLDNVEYDALPGGVNICPERYAS 233
>At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.; expression supported by MPSS
Length = 590
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 389 EKESSRYSKTYGTMRSHS*DSISSEARFWRLRNDIRLSRTTFHTQD 526
EK+ +Y+ TYG M S + D+++ R R N + T+D
Sbjct: 118 EKQKMKYNGTYGRMLSLATDALAEGMRDNRYCNGFDFEQNKLETKD 163
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,313
Number of Sequences: 28952
Number of extensions: 313976
Number of successful extensions: 747
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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