BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0636 (750 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 31 1.3 10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 29 5.2 05_06_0180 + 26173452-26173692,26174456-26174698,26174796-261750... 28 6.9 >09_04_0361 - 16948740-16948860,16948951-16949018,16949424-16949510, 16949626-16949694,16949786-16949854,16949944-16950765 Length = 411 Score = 30.7 bits (66), Expect = 1.3 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -3 Query: 697 SRGVLFHQYNQTGSSSQRRSAGEDARPRAL 608 SRG H N G RR AGE RP+AL Sbjct: 52 SRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81 >10_08_0493 + 18299885-18299892,18300201-18300837,18301254-18301676, 18301769-18302014,18302124-18302789,18303228-18303283, 18303367-18303460,18303559-18303738 Length = 769 Score = 28.7 bits (61), Expect = 5.2 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1 Query: 543 TSNAPPYGQPPNQP 502 ++N+PPYG PPN P Sbjct: 496 SANSPPYGGPPNDP 509 >05_06_0180 + 26173452-26173692,26174456-26174698,26174796-26175009, 26175115-26175194,26175381-26175502,26175950-26176053, 26176457-26176644,26176725-26176924,26177104-26177331 Length = 539 Score = 28.3 bits (60), Expect = 6.9 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = +1 Query: 16 IKKVAYVHQGTMSASNGKNNFSNRSSTFGAYS--KQTNKSF 132 +K ++YV + ++A NFSN+ S FG + +Q NKSF Sbjct: 187 LKNLSYVFEDNITA-----NFSNQGSVFGGHPSLEQRNKSF 222 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,912,626 Number of Sequences: 37544 Number of extensions: 371586 Number of successful extensions: 804 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 804 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1992480932 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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