Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0636
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495...    31   1.3  
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016...    29   5.2  
05_06_0180 + 26173452-26173692,26174456-26174698,26174796-261750...    28   6.9  

>09_04_0361 -
           16948740-16948860,16948951-16949018,16949424-16949510,
           16949626-16949694,16949786-16949854,16949944-16950765
          Length = 411

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -3

Query: 697 SRGVLFHQYNQTGSSSQRRSAGEDARPRAL 608
           SRG   H  N  G    RR AGE  RP+AL
Sbjct: 52  SRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81


>10_08_0493 +
           18299885-18299892,18300201-18300837,18301254-18301676,
           18301769-18302014,18302124-18302789,18303228-18303283,
           18303367-18303460,18303559-18303738
          Length = 769

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 543 TSNAPPYGQPPNQP 502
           ++N+PPYG PPN P
Sbjct: 496 SANSPPYGGPPNDP 509


>05_06_0180 +
           26173452-26173692,26174456-26174698,26174796-26175009,
           26175115-26175194,26175381-26175502,26175950-26176053,
           26176457-26176644,26176725-26176924,26177104-26177331
          Length = 539

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 16  IKKVAYVHQGTMSASNGKNNFSNRSSTFGAYS--KQTNKSF 132
           +K ++YV +  ++A     NFSN+ S FG +   +Q NKSF
Sbjct: 187 LKNLSYVFEDNITA-----NFSNQGSVFGGHPSLEQRNKSF 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,912,626
Number of Sequences: 37544
Number of extensions: 371586
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)