Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0636
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 366 GTSTLNILNPDIFFFAANIVL 428
           GT+TL++ N DI    +N+++
Sbjct: 172 GTATLDVYNADIMAATSNVII 192


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 366 GTSTLNILNPDIFFFAANIVL 428
           GT+TL++ N DI    +N+++
Sbjct: 172 GTATLDVYNADIMAATSNVII 192


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 34  VHQGTMSASNGKNNFSNRS 90
           +H+G  S  NG NN S RS
Sbjct: 307 IHRGRGSVHNGSNNGSPRS 325


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 663 VWLYW*NKTPLL*XGFVLDEFSDV 734
           +WL   N++P++  G+ + +F DV
Sbjct: 67  IWLSPINRSPMVDFGYDISDFKDV 90


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 300  SASHRNKIN*KKKTPLYLRLELTTKQQTS 214
            +ASH N++N + K  +  + ++ ++ QTS
Sbjct: 1143 TASHANQLNRQGKQVIQTQYQVVSQAQTS 1171



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/51 (17%), Positives = 26/51 (50%)
 Frame = -1

Query: 750 LALTPGRRKIHPRQNPVKAGGFCFTSITRLAVQAKDARLAKTRDQGHYESS 598
           + +TP +++I   Q+P+       T+   +  ++ ++  + T D+  + S+
Sbjct: 195 IRITPAKKRIKLEQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHSST 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,660
Number of Sequences: 438
Number of extensions: 4170
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)