BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0634 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 313 2e-86 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 177 2e-45 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 164 1e-41 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 123 3e-29 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 7e-21 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 93 4e-20 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 87 2e-18 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 50 3e-07 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.011 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.10 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.18 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.2 SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 27 2.2 SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.9 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.8 SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.0 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.6 SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 25 8.7 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.7 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 313 bits (768), Expect = 2e-86 Identities = 143/156 (91%), Positives = 149/156 (95%) Frame = +1 Query: 103 DEXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 282 +E AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Query: 283 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 462 RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121 Query: 463 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570 I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSG+ Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157 Score = 66.1 bits (154), Expect = 5e-12 Identities = 31/50 (62%), Positives = 35/50 (70%) Frame = +2 Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAER 718 +GV+HTVPIYEGYALPHAI MKIL ERGY+F+TTAER Sbjct: 157 DGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAER 206 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 177 bits (430), Expect = 2e-45 Identities = 80/151 (52%), Positives = 109/151 (72%), Gaps = 1/151 (0%) Frame = +1 Query: 121 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 300 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L + Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71 Query: 301 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 477 + PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131 Query: 478 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570 N PA+ ++Q VL+LYAS RTTGIVL+ G+ Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGD 162 Score = 33.5 bits (73), Expect = 0.033 Identities = 14/50 (28%), Positives = 27/50 (54%) Frame = +2 Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAER 718 +G++H+VPIY+G+++P AI L + G+ ++AE+ Sbjct: 162 DGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEK 211 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 164 bits (399), Expect = 1e-41 Identities = 76/154 (49%), Positives = 111/154 (72%), Gaps = 2/154 (1%) Frame = +1 Query: 115 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 288 A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63 Query: 289 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 468 +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + M Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123 Query: 469 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570 FE + +YVAIQAVLSLYA G ++G+V+DSG+ Sbjct: 124 FERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157 Score = 36.3 bits (80), Expect = 0.005 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +2 Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAE 715 +GV+H VP+YE L H + + +L +GY+F TA+ Sbjct: 157 DGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTAD 205 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 123 bits (296), Expect = 3e-29 Identities = 72/182 (39%), Positives = 100/182 (54%), Gaps = 32/182 (17%) Frame = +1 Query: 121 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 249 +++DNG+G K G+AG+DAP VFP+++ R G G M K Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66 Query: 250 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 408 D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126 Query: 409 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 564 LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186 Query: 565 GE 570 G+ Sbjct: 187 GD 188 Score = 25.8 bits (54), Expect = 6.6 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = +2 Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGY--SFTTTAER 718 +GV+H +P+ EGY + +I +L +R S TAER Sbjct: 188 DGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 95.5 bits (227), Expect = 7e-21 Identities = 53/151 (35%), Positives = 81/151 (53%) Frame = +1 Query: 115 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 294 +A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S G + Sbjct: 12 SAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-M 63 Query: 295 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 474 +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MFE Sbjct: 64 EIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFE 123 Query: 475 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 567 + PA Y+A Q + +ASG+ T ++D G Sbjct: 124 SLRCPATYLAKQETCAAFASGKGTACLVDIG 154 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 93.1 bits (221), Expect = 4e-20 Identities = 50/152 (32%), Positives = 89/152 (58%), Gaps = 3/152 (1%) Frame = +1 Query: 121 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 300 LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82 Query: 301 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 477 + P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141 Query: 478 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSG 567 +N P++ I + S Y + + ++GIVL+ G Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLG 173 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 87.4 bits (207), Expect = 2e-18 Identities = 46/156 (29%), Positives = 85/156 (54%), Gaps = 2/156 (1%) Frame = +1 Query: 106 EXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 285 E +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61 Query: 286 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 459 I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121 Query: 460 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 567 + FE + PA Y+ QAV +A+ ++T +++D G Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIG 157 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 50.4 bits (115), Expect = 3e-07 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Frame = +1 Query: 307 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 474 PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171 Query: 475 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 567 P +A + ++ LYA G G+V+D G Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 35.1 bits (77), Expect = 0.011 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 4/146 (2%) Frame = +1 Query: 121 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 300 +V+DNG+ KAGFAG P+ + R + G + ++G+E + TL Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57 Query: 301 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 468 ++ H G + +W +W N + P ++ +LLT+ + Q++ Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117 Query: 469 FETFNTPAMYVAIQAVLSLYASGRTT 546 FE F A A L + G T Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFT 143 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 31.9 bits (69), Expect = 0.10 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +1 Query: 367 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 510 +Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 31.1 bits (67), Expect = 0.18 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +1 Query: 166 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 309 G+ PRA F ++ P H G+++ M KD G+E S +G + + P Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 28.3 bits (60), Expect = 1.2 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 274 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 185 + L+ K+PS PY SRP A S TR Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335 >SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual Length = 325 Score = 27.5 bits (58), Expect = 2.2 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +1 Query: 640 NRSRPHRLPHEDPHRARLLVHYHRRAGKSFVTSRKXC 750 N RP + P DPH + L Y R + K S++ C Sbjct: 260 NSGRPQKPPQIDPHSSSLADEY-RESNKRLQESKESC 295 >SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual Length = 127 Score = 27.1 bits (57), Expect = 2.9 Identities = 23/60 (38%), Positives = 28/60 (46%) Frame = -1 Query: 303 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 124 F G +F CLI++IR +SH D EHG II C T L G I+YY Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.6 bits (56), Expect = 3.8 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -2 Query: 266 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 150 S T +SF P+PT P LPT NT + P+ PAL Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 26.2 bits (55), Expect = 5.0 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +1 Query: 409 LLTEAPLNPKANREKMTQIMFETFN 483 +L APL+ + +KM +++FET+N Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 25.8 bits (54), Expect = 6.6 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -1 Query: 303 FEGQDTSFALCLISYIRVLLSHTDHHA 223 +EG+DT+ +Y+R++L TD A Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100 >SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 439 Score = 25.4 bits (53), Expect = 8.7 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +2 Query: 545 PVSCWTPANGVSHTVPIYEGYA 610 PVS A+G +HT+P Y GYA Sbjct: 364 PVSMGDYASGTNHTLPTY-GYA 384 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Frame = -2 Query: 263 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAAXXSS 102 PT S P+ PT+ P P N S P PL+TTN +S Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,156,851 Number of Sequences: 5004 Number of extensions: 69444 Number of successful extensions: 210 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 203 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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