Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0634
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 330 7e-91
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 326 1e-89
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 325 3e-89
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 323 1e-88
SB_56| Best HMM Match : Actin (HMM E-Value=0) 323 1e-88
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 180 1e-45
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 1e-39
SB_54| Best HMM Match : Actin (HMM E-Value=0) 111 6e-25
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 97 1e-20
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 84 1e-16
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 69 4e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 58 8e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 48 8e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.002
SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5) 34 0.14
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.76
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.76
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.76
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 1.00
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.00
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 1.3
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 1.3
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 30 1.7
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 30 1.7
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.7
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 30 1.7
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 30 1.7
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.7
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_37909| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 4.0
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 4.0
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 28 7.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_12126| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 28 9.3
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 330 bits (811), Expect = 7e-91
Identities = 152/158 (96%), Positives = 156/158 (98%)
Frame = +1
Query: 97 MCDEXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 276
MCD+ AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 277 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 456
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 457 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Score = 71.3 bits (167), Expect = 8e-13
Identities = 34/50 (68%), Positives = 36/50 (72%)
Frame = +2
Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAER 718
+GV+HTVPIYEGYALPHAI MKILTERGYSFTTTAER
Sbjct: 158 DGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAER 207
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 326 bits (801), Expect = 1e-89
Identities = 150/158 (94%), Positives = 155/158 (98%)
Frame = +1
Query: 97 MCDEXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 276
M D+ AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 277 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 456
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 457 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Score = 29.9 bits (64), Expect(2) = 0.012
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2
Query: 674 ILTERGYSFTTTAER 718
I ERGYSFTTTAER
Sbjct: 166 IYEERGYSFTTTAER 180
Score = 26.6 bits (56), Expect(2) = 0.012
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 2/16 (12%)
Frame = +2
Query: 569 NGVSHTVPIYE--GYA 610
+GVSHTVPIYE GY+
Sbjct: 158 DGVSHTVPIYEERGYS 173
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 325 bits (798), Expect = 3e-89
Identities = 151/158 (95%), Positives = 155/158 (98%)
Frame = +1
Query: 97 MCDEXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 276
M D+ AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 277 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 456
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 457 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Score = 71.3 bits (167), Expect = 8e-13
Identities = 34/50 (68%), Positives = 36/50 (72%)
Frame = +2
Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAER 718
+GV+HTVPIYEGYALPHAI MKILTERGYSFTTTAER
Sbjct: 158 DGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAER 207
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 323 bits (793), Expect = 1e-88
Identities = 149/156 (95%), Positives = 154/156 (98%)
Frame = +1
Query: 103 DEXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 282
++ AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 283 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 462
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 463 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570
IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 157
Score = 71.3 bits (167), Expect = 8e-13
Identities = 34/50 (68%), Positives = 36/50 (72%)
Frame = +2
Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAER 718
+GV+HTVPIYEGYALPHAI MKILTERGYSFTTTAER
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAER 206
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 323 bits (793), Expect = 1e-88
Identities = 149/156 (95%), Positives = 154/156 (98%)
Frame = +1
Query: 103 DEXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 282
++ AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 283 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 462
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 463 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570
IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 157
Score = 71.3 bits (167), Expect = 8e-13
Identities = 34/50 (68%), Positives = 36/50 (72%)
Frame = +2
Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAER 718
+GV+HTVPIYEGYALPHAI MKILTERGYSFTTTAER
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAER 206
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 180 bits (437), Expect = 1e-45
Identities = 82/89 (92%), Positives = 84/89 (94%)
Frame = +1
Query: 103 DEXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 282
D+ AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 283 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 369
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 75.4 bits (177), Expect = 5e-14
Identities = 35/43 (81%), Positives = 40/43 (93%)
Frame = +1
Query: 442 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570
N + M +IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 120
Score = 71.3 bits (167), Expect = 8e-13
Identities = 34/50 (68%), Positives = 36/50 (72%)
Frame = +2
Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAER 718
+GV+HTVPIYEGYALPHAI MKILTERGYSFTTTAER
Sbjct: 120 DGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAER 169
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 160 bits (388), Expect = 1e-39
Identities = 75/155 (48%), Positives = 105/155 (67%), Gaps = 3/155 (1%)
Frame = +1
Query: 115 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 288
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 289 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 465
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 466 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570
MFE + +Y+AIQAVL+LYA G TG+V+DSG+
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGD 161
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAE 715
+GV+H P+YEG+ALPH +K++ RGY+F TA+
Sbjct: 161 DGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTAD 209
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 111 bits (267), Expect = 6e-25
Identities = 50/74 (67%), Positives = 61/74 (82%)
Frame = +1
Query: 349 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 528
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 529 ASGRTTGIVLDSGE 570
ASGRTTG V D G+
Sbjct: 2189 ASGRTTGTVFDCGD 2202
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 121 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 222
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 55.2 bits (127), Expect = 5e-08
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = +2
Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAER 718
+GVSHTVP+Y+GY LPHA +++TERGYSF +TAE+
Sbjct: 2202 DGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQ 2251
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 97.5 bits (232), Expect = 1e-20
Identities = 40/58 (68%), Positives = 53/58 (91%)
Frame = +1
Query: 397 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+G+
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGD 183
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAE 715
+GVSH+VPIYEG+A+PH+I +L + G+ F +++E
Sbjct: 183 DGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSE 231
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 83.8 bits (198), Expect = 1e-16
Identities = 34/87 (39%), Positives = 59/87 (67%)
Frame = +1
Query: 307 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 486
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 487 PAMYVAIQAVLSLYASGRTTGIVLDSG 567
PA ++ +VL+ +A+GR+ G+V+DSG
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSG 89
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/50 (64%), Positives = 35/50 (70%)
Frame = +2
Query: 569 NGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAER 718
+GVSH VPIYEGYALPHAI MK++TERGYSFTTTAER
Sbjct: 36 DGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYSFTTTAER 85
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +1
Query: 463 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 570
IMFE FN+PA+YVAIQAVLSLYASGRTTG+V DSG+
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGD 36
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 106 EXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 222
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 58.0 bits (134), Expect = 8e-09
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +1
Query: 91 FKMCDEXXAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 261
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 262 GDEAQSKRGILTL 300
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 508 QAVLSLYASGRTTGIVLDSGERC 576
Q LSLYASG T G+ L SG C
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSC 789
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +1
Query: 235 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 414
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = +1
Query: 115 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 294
A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 234 ATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKDYS 285
Query: 295 TLKY--PIEHGIVTNWDDMEKIWHHTFYNE 378
L Y P + G + NWD ++IW +TF E
Sbjct: 286 ALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = -1
Query: 219 MAGPSHDRGEHGARSIISCETGLAHTGAIV 130
MA + D GE+G+ SI+S ETGLAHTGAI+
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAII 30
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +1
Query: 352 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 531
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 532 SGRTTGIV 555
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)
Length = 491
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = -3
Query: 637 VQTQDGVGECVSFVDGHGVGDTVRRSPARYRWYDRTRTARAR 512
V DGVG CV DG G D R P YDR R +R+R
Sbjct: 211 VDNDDGVGGCVDNDDGGGAADLQLRHPDP---YDRVRLSRSR 249
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 298 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 450
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 194 GNTARGASSPAKPALHIPEPLSTT 123
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 439 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 555
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.5 bits (68), Expect = 0.76
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 342 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 166
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 193 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 251
Query: 165 CETGLAHT 142
CET L T
Sbjct: 252 CETQLVPT 259
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 194 GNTARGASSPAKPALHIPEPLSTT 123
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.1 bits (67), Expect = 1.00
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 342 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 166
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 251 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 309
Query: 165 CETGLAHT 142
CET L T
Sbjct: 310 CETQLVLT 317
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.1 bits (67), Expect = 1.00
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 342 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 166
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 71 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 129
Query: 165 CETGLAHT 142
CET L T
Sbjct: 130 CETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.1 bits (67), Expect = 1.00
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 342 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 166
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 105 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 163
Query: 165 CETGLAHT 142
CET L T
Sbjct: 164 CETQLVLT 171
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 342 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 166
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 388 VVPVFKKSGKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 446
Query: 165 CETGLAHT 142
CET L T
Sbjct: 447 CETQLVLT 454
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 342 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 166
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 229 VVPVFKKSGKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 287
Query: 165 CETGLAHT 142
CET L T
Sbjct: 288 CETQLVLT 295
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 342 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 166
V+PV S D + S +C ++LSH + H M D +HG RS S
Sbjct: 153 VVPVFKKSSKDNPENYRPISLTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFS 211
Query: 165 CETGLAHT 142
CET L T
Sbjct: 212 CETQLVLT 219
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 369 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 202
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 210 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 268
Query: 201 DRGEHGARSIISCETGLAHT 142
+HG R +SCET L T
Sbjct: 269 SIFQHGFRQALSCETQLVLT 288
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 194 GNTARGASSPAKPALHIPEPLSTT 123
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 423 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 515
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
Length = 361
Score = 30.3 bits (65), Expect = 1.7
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Frame = +2
Query: 365 PSTMS-CVSPPRNTQSC-SXXXXXXXXXXXXXXXXXC-SKHSTRPPCTSPSKPCSRCTRP 535
P+T+ C SPP + C S C S +T PC SP C P
Sbjct: 268 PNTVRPCHSPPNTVRPCHSPPTAFRPCHSPPNTVRPCHSPPNTVRPCHSPPTAVRPCHSP 327
Query: 536 VVPPVSCWTPANGVSHTVPIYEGY----ALPHAI 625
C +P N V H +P Y A+PH +
Sbjct: 328 PTAVRPCHSPPNTV-HPLPFPTKYLSTPAIPHQL 360
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 369 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 202
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 71 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 129
Query: 201 DRGEHGARSIISCETGLAHT 142
+HG R +SCET L T
Sbjct: 130 SIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 369 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 202
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 1609 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 1667
Query: 201 DRGEHGARSIISCETGLAHT 142
+HG R +SCET L T
Sbjct: 1668 SIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 369 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 202
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 637 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 695
Query: 201 DRGEHGARSIISCETGLAHT 142
+HG R +SCET L T
Sbjct: 696 SIFQHGFRQALSCETQLVLT 715
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 488 PPCTSPSKPCSRCTRPVVPPVSCWTPANGVSH 583
PP P P T P +PP SC G S+
Sbjct: 973 PPLPPPPPPVQTTTAPTLPPASCMPTHEGTSN 1004
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 30.3 bits (65), Expect = 1.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 503 PSKPCSRCTRPVVPP 547
P++PCS CT+P +PP
Sbjct: 220 PTEPCSLCTKPALPP 234
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 369 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 202
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 1047 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 1105
Query: 201 DRGEHGARSIISCETGLAHT 142
+HG R +SCET L T
Sbjct: 1106 SIFQHGFRQALSCETQLVLT 1125
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 369 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 202
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 71 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 129
Query: 201 DRGEHGARSIISCETGLAHT 142
+HG R +SCET L T
Sbjct: 130 SIFQHGFRQALSCETQLVLT 149
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 276 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 142
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_37909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 504 HPSRALAVRVRSYHRYRAGLRRTVSPTPCPSTKDTHSPTPSCVWT 638
HP+R L R + + + A R+T PC DT P+ C WT
Sbjct: 33 HPTR-LETRTKESNIHLA--RKTSRDYPCAYAHDTDQPSDLCQWT 74
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 342 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 166
V+PV S D + S +C ++LSH + H L A +HG R +S
Sbjct: 204 VVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALS 262
Query: 165 CETGLAHT 142
CET L T
Sbjct: 263 CETQLVLT 270
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 342 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 166
V+PV S D + S +C ++LSH + H L A +HG R +S
Sbjct: 2 VVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALS 60
Query: 165 CETGLAHT 142
CET L T
Sbjct: 61 CETQLVLT 68
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 427 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 555
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 282 FALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 151
FA CL + V+LSH + H L A +HG R+ SCET L
Sbjct: 462 FATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQL 506
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 194 GNTARGASSPAKPALHIPEPLSTT 123
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 194 GNTARGASSPAKPALHIPEPLSTT 123
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 423 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRTVSPTPCPSTK 602
SP+ + ++ P R + RR S + R R Y RR SPTP P +
Sbjct: 861 SPEHRRRREASPPRRDRKRYDSPPRRRRRSPSPPPRRRRRDSYSPSRRRRDSPTPSPPPR 920
Query: 603 DTH-SPTPS 626
SP+PS
Sbjct: 921 RRRKSPSPS 929
>SB_12126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 485 RPPCTSPSKPCSRCTRPVVPPVSC-WTP-ANGVSHTVPIY 598
R P +PS+ C R R VV V W+P V H+ P Y
Sbjct: 46 REPRETPSQECLRLRRLVVMSVLLWWSPTCESVGHSFPYY 85
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 580 PHRAHLRRIRTPPR-HPASGLNRSRPHRLPHEDPH 681
PHR H+ RTP R H PH P +PH
Sbjct: 161 PHRPHMDPTRTPHRPHMDPTRTSHGPHTDPTRNPH 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,870,236
Number of Sequences: 59808
Number of extensions: 654639
Number of successful extensions: 2385
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 2039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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