Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0634
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 549 YRAGLRRTVSPTPCPSTKDTHSPTPS 626
           +RA L +T  P  CP  +   SP+ S
Sbjct: 555 HRASLSKTPQPPQCPRFRKLDSPSDS 580


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
 Frame = +1

Query: 553 VLDSGERCLP-HRAHLRRI-RTP-PRHPASGLNRSRPHRLPHEDPHRARLLVHYH 708
           VLD  +  L  H   L  +  TP P H   G   S  H  PH     A    H H
Sbjct: 390 VLDLEDNALASHNNLLNNVYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 379  LRVAPEEHPVLLTEAPLNPKANREKM 456
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 674  ILTERGYSFTTTAERXNRS*HQGK 745
            +L ++G    TTA   N+   QGK
Sbjct: 1132 LLAQKGLKLATTASHANQLNRQGK 1155


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 142 GMCKAGFAGD 171
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,499
Number of Sequences: 438
Number of extensions: 5430
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)