Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0633
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 392 e-110
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 217 1e-57
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 198 5e-52
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 186 3e-48
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 182 4e-47
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 175 4e-45
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 175 4e-45
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 174 1e-44
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 173 2e-44
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 172 4e-44
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 172 5e-44
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 167 1e-42
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 166 3e-42
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 159 3e-40
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 150 2e-37
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 142 6e-35
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 140 2e-34
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 120 2e-28
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 120 2e-28
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 116 4e-27
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 66 7e-12
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 36 0.006
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 33 0.043
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 33 0.057
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.13
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.18
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.54
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.94
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 29 0.94
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 28 1.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.6
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 3.8
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 3.8
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 5.0
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 26 5.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 5.0
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 6.6
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 6.6
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 8.7
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 8.7
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 392 bits (965), Expect = e-110
Identities = 192/249 (77%), Positives = 215/249 (86%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG+KPPRGILMYGPPGTGKTL+ARAVANETGAFFFLINGPEIMSK+AGESESNLRKAFEE
Sbjct: 253 IGIKPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEE 312
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A+KNSPAIIFIDE+D+IAPKREKT+GEVERR+VSQLLTLMDGMK S+V+VMAATNRPNS
Sbjct: 313 AEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS 372
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
IDPALRRFGRFDRE+D+GIPD TGRLEILRIHTKNMKL DDVDL QIAAE+HG+VG+DLA
Sbjct: 373 IDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLA 432
Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDARGSQFSGCLHG*LPVRNDEIVXVGVT*DSGGEV 722
SLCSEAA+QQIREKMD+IDL++D+IDA G + ++ EV
Sbjct: 433 SLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSALR-ETVVEV 491
Query: 723 PNVTWTDIG 749
PNV W DIG
Sbjct: 492 PNVRWEDIG 500
Score = 181 bits (441), Expect = 8e-47
Identities = 88/197 (44%), Positives = 128/197 (64%), Gaps = 2/197 (1%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
GV P +G+L +GPPGTGKTL+A+A+ANE A F + GPE++S GESESN+R F++A
Sbjct: 527 GVTPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKA 586
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEV--ERRIVSQLLTLMDGMKKSSHVIVMAATNRPN 359
+P ++F+DELD+IA R + G+ R+V+QLLT MDG+ +V V+ ATNRP+
Sbjct: 587 RAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPD 646
Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
IDPAL R GR D+ I + +PD R IL+ ++ + +DVDL +A +HG GADL
Sbjct: 647 QIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADL 706
Query: 540 ASLCSEAALQQIREKMD 590
+ A I++ ++
Sbjct: 707 EFVVQRAVKLAIKDSIE 723
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +1
Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711
EVL+SL V+MDNFR+A+ S+ SALRETV
Sbjct: 460 EVLDSLGVTMDNFRFALGSSNPSALRETV 488
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 217 bits (531), Expect = 1e-57
Identities = 116/249 (46%), Positives = 161/249 (64%), Gaps = 2/249 (0%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
+ PPRG+L+YGPPGTGKT++ RAVA E A F I+GP ++ K GE+ES LRK FE+A
Sbjct: 310 IMPPRGVLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDAR 369
Query: 189 KNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSID 368
+ P+IIFIDE+DA+APKR + E E R V+ LLTL+DGM + V+V+AATNRPNSID
Sbjct: 370 AHQPSIIFIDEIDALAPKRTEDVSEAESRAVATLLTLLDGMANAGKVVVIAATNRPNSID 429
Query: 369 PALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADLAS 545
ALRR GR ++EI+IGIPD + RL+I+++ + +D L +A+ +H +VGADLA+
Sbjct: 430 EALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAA 489
Query: 546 LCSEAALQQIREKMDLIDLEDDQIDARGS-QFSGCLHG*LPVRNDEIVXVGVT*DSGGEV 722
+ EAAL+ I+ + L + +D G+ Q VR + + E
Sbjct: 490 VVREAALRAIKRTISL-QKDTSGLDIFGAVQMDDLEFALSSVRQSAMREFMM------ES 542
Query: 723 PNVTWTDIG 749
PNV W+DIG
Sbjct: 543 PNVHWSDIG 551
Score = 185 bits (450), Expect = 7e-48
Identities = 86/196 (43%), Positives = 132/196 (67%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+GV+PP+G+L+YGPPG KT+ A+A+A ETG F + GPE+ K GESE +R+ F++
Sbjct: 577 LGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQK 636
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A + SP++IF DE+DA+ R + + R+V+ LL +DG++ +V+V+AATNRP+
Sbjct: 637 ARQASPSVIFFDEIDALTANRGEDNS--SDRVVAALLNELDGIEALRNVLVLAATNRPDM 694
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
IDPAL R GR DR + +G P+ R +I++I + MK +DVDL IA ++ G GA++
Sbjct: 695 IDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVV 754
Query: 543 SLCSEAALQQIREKMD 590
+LC EA L + E ++
Sbjct: 755 ALCQEAGLIAMHEDLE 770
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 556 RQPCSRFVRRWISLTSRTIRLTPEVLNSLAVSMDNFRYAMTKSSXSALRE 705
R+ R ++R ISL T L ++ AV MD+ +A++ SA+RE
Sbjct: 492 REAALRAIKRTISLQKDTSGL--DIFG--AVQMDDLEFALSSVRQSAMRE 537
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 198 bits (484), Expect = 5e-52
Identities = 96/195 (49%), Positives = 133/195 (68%), Gaps = 4/195 (2%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G+ PPRG+L++GPPG GKT++A A+ANE G F I+ P I+S ++GESE +R+ FEEA
Sbjct: 204 GIHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEA 263
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMK----KSSHVIVMAATNR 353
+P ++FIDE+DA+ PKRE E+ERRIV+Q LT MD + V+V+ ATNR
Sbjct: 264 KSLAPCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNR 323
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
P+S+D ALRR GRFDREI + +P R +ILR K +KL D D Q+A ++ G+VGA
Sbjct: 324 PDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGA 383
Query: 534 DLASLCSEAALQQIR 578
DL +L + A + I+
Sbjct: 384 DLKALTAAAGIIAIK 398
Score = 182 bits (442), Expect = 6e-47
Identities = 90/194 (46%), Positives = 130/194 (67%), Gaps = 2/194 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+ P G+L++GPPG GKTL+A+AVANE+ A F I GPE+++K GESE +R+ F
Sbjct: 521 VGISAPTGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLR 580
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A +SP +IF DELDA+ P+R+ + E R+V+ LLT +DG+ S V V+AATNRP+
Sbjct: 581 ARASSPCVIFFDELDAMVPRRDDSLSEASSRVVNTLLTELDGLSDRSGVYVIAATNRPDI 640
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESH--GHVGAD 536
IDPA+ R GR D+ + + +PDA R+EIL+ TK L ++V+L + + GAD
Sbjct: 641 IDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGAD 700
Query: 537 LASLCSEAALQQIR 578
LA+L EAA+ +R
Sbjct: 701 LAALVREAAVTALR 714
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 186 bits (453), Expect = 3e-48
Identities = 101/218 (46%), Positives = 138/218 (63%), Gaps = 6/218 (2%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G+KP G+L+YGPPGTGKTL+A+AVA E F I GPE+++ GESE+N+R FE+A
Sbjct: 684 GLKPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKA 743
Query: 186 DKNSPAIIFIDELDAIAPKR--EKTHGEVERRIVSQLLTLMDGMKK--SSHVIVMAATNR 353
+SP +IF DELD+IAP R G V R+VSQLL +D + K + +V V+ ATNR
Sbjct: 744 RNSSPCVIFFDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNR 803
Query: 354 PNSIDPALRRFGRFDREIDIGI-PDATGRLEILRIHTKNMKLGDDVDLXQIAAESH-GHV 527
P+ +DP+L R GRFD+ + +GI + +LR TK KL + +DL +IA H
Sbjct: 804 PDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFT 863
Query: 528 GADLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFS 641
GAD+ +LCS+A L I+ K + IDL I A G+ S
Sbjct: 864 GADMYALCSDAVLSAIKRKTNEIDL---LIQASGTDLS 898
Score = 49.6 bits (113), Expect = 5e-07
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 4/187 (2%)
Frame = +3
Query: 30 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAII 209
L++G P TGKT VA+ A F I+ E A E+ L + K+ AII
Sbjct: 426 LLHGNPFTGKTKAVEEVASLFSAPVFTISSYEFADATADHLEAKLDMFVQNVVKSPCAII 485
Query: 210 FIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKK-SSHVIVMAATNRPNSIDPALRRF 386
F+ +LD ++ ++ + + + LL+ +D +K IV+ + I +
Sbjct: 486 FVKDLDVLSISSDEGNIVPGSKSIQILLSKIDLVKSPQGRYIVIGTCHSIEKIPYEILSE 545
Query: 387 GRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASL---CSE 557
F E+ + RLE+L+I+ N+ + + L +A +++ +L L ++
Sbjct: 546 SFF--ELKFSELEMDERLELLKIYANNVIIDKRISLKDVALKTNSMSFGELECLPDHMTK 603
Query: 558 AALQQIR 578
AA+ +I+
Sbjct: 604 AAVDRIK 610
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 182 bits (444), Expect = 4e-47
Identities = 94/196 (47%), Positives = 126/196 (64%), Gaps = 6/196 (3%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKA 173
++PPRG+L +GPPGTGKTL+ARA+A + F++ G + +SK GE+E LR
Sbjct: 297 MQPPRGVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLL 356
Query: 174 FEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
FEEA P+IIF DE+D +AP R ++ IVS LL LMDGM+ VI++ ATNR
Sbjct: 357 FEEAKSTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGMESRGQVIIIGATNR 416
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAE-SHGHVG 530
P+++DPALRR GRFDRE +PD R +I+ IHT+N L + AE S G+ G
Sbjct: 417 PDAVDPALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGG 476
Query: 531 ADLASLCSEAALQQIR 578
ADL +LC+EAAL I+
Sbjct: 477 ADLRALCTEAALNSIK 492
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 175 bits (427), Expect = 4e-45
Identities = 92/210 (43%), Positives = 129/210 (61%), Gaps = 3/210 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+ PP+GI++YGPPGTGKTL ARAVAN T A F + G E++ K GE +R+ FE
Sbjct: 208 LGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEM 267
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A IIF DE+DAI R + G+ E +R + +L+T +DG ++ V+ ATNR
Sbjct: 268 ARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNR 327
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
PN++D AL R GR DR+++ G+PD GR ILRIH K+M + D+ IA GA
Sbjct: 328 PNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGA 387
Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDA 623
+L S+C+EA + IR + + E D +DA
Sbjct: 388 ELRSVCTEAGMFAIRARR-RVATEKDFLDA 416
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 175 bits (427), Expect = 4e-45
Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 4/206 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K PRG+L+ GPPGTGKT++ARAVA E FF ++G + G +R+ F
Sbjct: 295 LGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAA 354
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKS---SH-VIVMAATN 350
A K +P+IIFIDELDAI KR R+ ++QLL +DG K+ +H V+ + ATN
Sbjct: 355 ARKQAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATN 414
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
P S+DPAL R GRFDR I + +PD GRL IL HT+++ LG DVDL IA + G G
Sbjct: 415 FPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAG 474
Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608
ADLA+L ++AA+ + + + D
Sbjct: 475 ADLANLINQAAVYASKNLSTAVSMRD 500
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 174 bits (424), Expect = 1e-44
Identities = 93/209 (44%), Positives = 126/209 (60%), Gaps = 7/209 (3%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKA 173
+ PPRG+L +GPPGTGKTL+AR +A FFL G + +SK GE+E LR
Sbjct: 403 ITPPRGVLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLL 462
Query: 174 FEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
FEEA + P+IIF DE+D +AP R + IVS LL LMDG+ V+V+ ATNR
Sbjct: 463 FEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHSSIVSTLLALMDGLDTRGQVVVIGATNR 522
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNM--KLGDDVDLXQIAAESHGHV 527
PN +DPALRR GRFDRE +P+ R++IL I++ + K+ + L +A + G+
Sbjct: 523 PNDLDPALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPKIPESY-LLHLAESTSGYG 581
Query: 528 GADLASLCSEAALQQIREKMDLIDLEDDQ 614
GADL +LC+EAAL +R I D+
Sbjct: 582 GADLKALCTEAALNAVRRTFPQIYTSSDK 610
Score = 33.1 bits (72), Expect = 0.043
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = +3
Query: 123 EIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 302
E++ S L K F EA KN+P+IIFI+ + EK +S L L+
Sbjct: 742 ELLMDTTTSPRSLLTKIFSEARKNAPSIIFINNV-------EKWPSLFSHSFLSMFLLLL 794
Query: 303 DGMKKSSHVIVM--AATNRPNSIDPALRRFGRFDREI-DIGIPDATGR 437
D + V+++ A TN+ F E D+ PD + R
Sbjct: 795 DSISPLEPVMLLGFANTNQEKLSSTVRSWFPSHRSEYHDLSFPDYSSR 842
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 173 bits (421), Expect = 2e-44
Identities = 88/210 (41%), Positives = 137/210 (65%), Gaps = 5/210 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+ P+GIL+YGPPGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F
Sbjct: 174 LGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVM 233
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG-----EVERRIVSQLLTLMDGMKKSSHVIVMAAT 347
A +++P+IIF+DE+D+I R + G EV+R ++ +LL +DG + + ++ V+ AT
Sbjct: 234 AREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTML-ELLNQLDGFEATKNIKVIMAT 292
Query: 348 NRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHV 527
NR + +DPAL R GR DR+I+ P A R EILRIH+++M L +DL IA + +G
Sbjct: 293 NRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGAS 352
Query: 528 GADLASLCSEAALQQIREKMDLIDLEDDQI 617
GA+L +C+EA + +RE+ + ED ++
Sbjct: 353 GAELKGVCTEAGMFALRERRVHVTQEDFEL 382
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 172 bits (419), Expect = 4e-44
Identities = 86/196 (43%), Positives = 126/196 (64%), Gaps = 3/196 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+GVKPP+G LM+GPPGTGKTL+ARA A ++ A F + P+++ G+ +R AF
Sbjct: 214 LGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFAL 273
Query: 183 ADKNSPAIIFIDELDAIAPKR---EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A + SPAIIFIDELDAI KR EK +R + +LL +DG V V+AATNR
Sbjct: 274 AKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR 333
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
+++DPAL R GR DR+++ +P+ R+ ILRIH++ M + DD++ ++A + + GA
Sbjct: 334 VDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGA 393
Query: 534 DLASLCSEAALQQIRE 581
L S+C EA + +R+
Sbjct: 394 MLKSVCVEAGMIALRQ 409
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 172 bits (418), Expect = 5e-44
Identities = 88/206 (42%), Positives = 125/206 (60%), Gaps = 6/206 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K PRG ++ GPPGTGKTL+A+A A E F ++G E + G S +R F
Sbjct: 324 LGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFAT 383
Query: 183 ADKNSPAIIFIDELDAIAPKREK--THGEVERR--IVSQLLTLMDGMKKSSHVIVMAATN 350
A KN+P IIFIDE+DAI R + G + R ++QLL MDG S H++V A TN
Sbjct: 384 ARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTN 443
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGH 524
RP+ +DPAL R GRFDR+I I PD GR +I ++H K++K D++DL ++A + G
Sbjct: 444 RPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGF 503
Query: 525 VGADLASLCSEAALQQIREKMDLIDL 602
GAD+ ++C+E AL R + + +
Sbjct: 504 TGADIMNVCNEGALIAARSNSNEVQM 529
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 167 bits (407), Expect = 1e-42
Identities = 86/210 (40%), Positives = 131/210 (62%), Gaps = 3/210 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+KPP+G+L+YGPPGTGKTL+ARAVA G F + I+ K GES +R+ F
Sbjct: 161 VGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGY 220
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A ++ P +IF+DE+DAI +R E T + E +R + +LL MDG ++ ATNR
Sbjct: 221 AKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNR 280
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
P+++DPAL R GR DR+I+I +P+ GR+EIL+IH + + ++D + + G GA
Sbjct: 281 PDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGA 340
Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDA 623
DL ++ +EA I+E D + ++ D + A
Sbjct: 341 DLRNVVTEAGFIAIKEDRDYV-IQSDLMSA 369
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 166 bits (404), Expect = 3e-42
Identities = 86/206 (41%), Positives = 129/206 (62%), Gaps = 4/206 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+KPP+G+++YG PGTGKTL+A+AVAN+T A F + G E++ K G+ +R+ F
Sbjct: 220 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNA 279
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGMKKSSHVI-VMAATN 350
A+++SP+I+FIDE+DAI KR ER R + +LL +DG S I V+ ATN
Sbjct: 280 AEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATN 339
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
R + +DPAL R GR DR+I PD + +I IHT M LG+DV+L ++ G
Sbjct: 340 RISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSG 399
Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608
A++ ++ SEA L +RE+ + ++D
Sbjct: 400 AEIKAIVSEAGLLALRERRMRVVMDD 425
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 159 bits (387), Expect = 3e-40
Identities = 89/207 (42%), Positives = 126/207 (60%), Gaps = 4/207 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG+ PPRG+L+YGPPGTGKT++ +AVAN T A F + G E + K GE +R F
Sbjct: 163 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRM 222
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A +N+PAIIFIDE+DAIA KR +T + E +RI+ +LLT MDG + ++V V+ ATNR
Sbjct: 223 ARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNR 282
Query: 354 PNSIDPALRRFGRFDREIDI-GIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
+++DPAL R GR DR+I+ D R + + T M L +VDL G
Sbjct: 283 ADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSG 342
Query: 531 ADLASLCSEAALQQIREKMDLIDLEDD 611
A +A++ +A L +R+ +I L+ D
Sbjct: 343 AQIAAIMQDAGLLAVRKSRGVI-LQSD 368
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 150 bits (363), Expect = 2e-37
Identities = 84/202 (41%), Positives = 127/202 (62%), Gaps = 15/202 (7%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFF-FLINGPEIMSKLAGESESNLRKAFE 179
+G+ +GIL+YGPPGTGKTLIAR + A ++NGPEI++K G+SE N+RK F
Sbjct: 299 LGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFA 358
Query: 180 EADK--------NSPAIIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGMKKSSHV 329
+A++ + II DELDAI KR + G+ V ++V+QLL MDG+ + +++
Sbjct: 359 DAEREYRDRGEESGLHIIIFDELDAICKKRGSSGGDTGVGDQVVNQLLAKMDGVDQLNNI 418
Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMK----LGDDVDLX 497
+V+ TNR + ID AL R GR + ++I +PD GRL+IL+IHT M L +DVD+
Sbjct: 419 LVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDME 478
Query: 498 QIAAESHGHVGADLASLCSEAA 563
++A+ + GA++A L A+
Sbjct: 479 ELASLTKNFSGAEIAGLIKSAS 500
Score = 40.3 bits (90), Expect = 3e-04
Identities = 30/144 (20%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVA-NETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPA 203
+L+ GP +GKT +A +A F L++ ++ +++ + FE++ K+ +
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVKLVSAESMVGMNENARVAHVNRVFEDSYKSPLS 647
Query: 204 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRR 383
+I +DE++ I ++ L+ L H +++ AT ++ +
Sbjct: 648 VIVVDEIERII-DWVPIGPRFSNTLLQTLMVLFKKQPPKGHRLLILATTSERTMLSRMDM 706
Query: 384 FGRFDREIDIGIPDATGRLEILRI 455
FD E I +P+ + E+ RI
Sbjct: 707 TQSFDAE--IAVPNVSNVTELDRI 728
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 142 bits (343), Expect = 6e-35
Identities = 75/193 (38%), Positives = 121/193 (62%), Gaps = 2/193 (1%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G KP GIL+YGPPGTGK+ +A+AVA E G+ FF I+ +++SK GESE +R+ FE A
Sbjct: 158 GRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMA 217
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGM-KKSSHVIVMAATNRPNS 362
+ P+IIFIDE+D++ R + E RRI ++ L M+G+ K S V+V+ ATN P +
Sbjct: 218 REQKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWT 277
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADL 539
+D A+RR RF++ I I +P+A R + ++ + D ++A + G+ G+D+
Sbjct: 278 LDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDI 335
Query: 540 ASLCSEAALQQIR 578
+ + +A ++ +R
Sbjct: 336 SIVVRDAIMEPVR 348
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 140 bits (339), Expect = 2e-34
Identities = 71/195 (36%), Positives = 113/195 (57%)
Frame = +3
Query: 18 PRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS 197
P GIL++G PG GKT +A A+++ F I GPE++ K G+SE +R F A
Sbjct: 640 PTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAK 699
Query: 198 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPAL 377
P ++F DE D++AP+R + V R+V+Q+LT MDG + V ++AAT RP+ IDPAL
Sbjct: 700 PCVLFFDEFDSVAPRRGQDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPAL 759
Query: 378 RRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASLCSE 557
R GR D+ I +P+ RLE+L+ + + L +++ + G+ ADL+SL +
Sbjct: 760 LRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYD 819
Query: 558 AALQQIREKMDLIDL 602
A L + + + + +
Sbjct: 820 AHLIAVHKLLKRVSI 834
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 120 bits (289), Expect = 2e-28
Identities = 78/201 (38%), Positives = 112/201 (55%), Gaps = 12/201 (5%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
+P RG+L++GPPGTGKT++ARAVA E+ + FF I+ + SK GESE +R F A K
Sbjct: 490 EPARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKK 549
Query: 192 NSPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGMKKSS---------HVIVM 338
SP+IIF+DE+D++ R E E RRI ++ L + +++ V+V+
Sbjct: 550 LSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVL 609
Query: 339 AATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDV-DLXQIAAES 515
AATN P ID A RR RF R I +PD T R L K K + D+ I +
Sbjct: 610 AATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLEDIEAIVKAT 667
Query: 516 HGHVGADLASLCSEAALQQIR 578
+ G+DL +L +AA+ +R
Sbjct: 668 EYYSGSDLTALAKDAAMGPLR 688
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 120 bits (289), Expect = 2e-28
Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 1/192 (0%)
Frame = +3
Query: 18 PRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS 197
P+G+L+YGPPG GKT++A+A+A ++ A F ++ + K GES + F A K
Sbjct: 125 PKGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLE 184
Query: 198 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-MKKSSHVIVMAATNRPNSIDPA 374
P IIFIDE+D +R++T E +I ++ +++ DG + S V+V+ ATNRP ID A
Sbjct: 185 PTIIFIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGLLSGQSRVLVLGATNRPADIDEA 244
Query: 375 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASLCS 554
+RR R + I +P+A R +IL ++ K + L + D + + G G+ + +C
Sbjct: 245 IRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCR 302
Query: 555 EAALQQIREKMD 590
A RE D
Sbjct: 303 SALSVPRRELFD 314
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 116 bits (279), Expect = 4e-27
Identities = 74/208 (35%), Positives = 120/208 (57%), Gaps = 13/208 (6%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
+P +G+L++GPPGTGKT++ARAVA E A FF I+ + SK G+SE +R FE A +
Sbjct: 410 EPVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKR 469
Query: 192 NSPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGM------KKSSH---VIVM 338
+ ++IF+DE+D+I R + E E RR+ ++ L + K++ H V+V+
Sbjct: 470 QTCSVIFVDEIDSILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVL 529
Query: 339 AATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR--IHTKNMKLGDDVDLXQIAAE 512
AATN P ID A RR RF + I +P+ R + L +H + L ++ DL ++
Sbjct: 530 AATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEE-DLEELVNL 586
Query: 513 SHGHVGADLASLCSEAALQQIREKMDLI 596
+ G+ G+D+ +L +AA+ +R D +
Sbjct: 587 TEGYSGSDITALAKDAAMGPLRNLGDAL 614
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 65.7 bits (153), Expect = 7e-12
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 5/166 (3%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G+ RG L+YGPPG+GKT A+A E ++N E G ++ L
Sbjct: 238 GIPYRRGYLLYGPPGSGKTSFLYALAGELDYDICVLNLAE-----KGLTDDRLNHLLSNV 292
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEV---ERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356
A++ ++++D+ RE++ GEV S LL +DG+ S I+ TN P
Sbjct: 293 PPK--AVVLLEDVDSAFQGRERS-GEVGFHANVTFSGLLNALDGVTSSDERIIFMTTNHP 349
Query: 357 NSIDPALRRFGRFDREIDIG--IPDATGRLEILRIHTKNMKLGDDV 488
+DPAL R GR D + +G P+ R R + + ++ DD+
Sbjct: 350 EKLDPALVRPGRVDVKAYLGNATPEQV-REMFTRFYGHSPEMADDL 394
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLR 167
R ILM GPP TGKT IA +A G+ F ++ E+ S ++E+ L+
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQ 116
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 33.1 bits (72), Expect = 0.043
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES---NLRKAFEEA 185
+G+L G GTGKT +A A+A E G F + G E+ S ++E+ N R+A
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFRRAIGLR 124
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL 299
K + + + + + + E G + I LL L
Sbjct: 125 VKETKEVYEGEVTEMVPEEAENPLGGYGKTISHVLLGL 162
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 32.7 bits (71), Expect = 0.057
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESES-------NLRKAFEEA 185
+ GPPG GKT + +++A+ F F + G ++++ G + + +A ++
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFFRFSVGGLTDVAEIKGHRRTYIGAMPGKIVQALKKV 635
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSS 323
+P +I IDE+D + K+H + S LL L+D + S+
Sbjct: 636 QTENP-LILIDEIDKVG----KSH---QGDPASALLELLDSEQNSA 673
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 137
+ +L+ GPPG GKT A VA G +N + SK
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNASDTRSK 448
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLIN 116
IL+ G PG GKT + A+A ETG IN
Sbjct: 1562 ILLEGSPGVGKTSLITALARETGHQLVRIN 1591
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPE 125
IL+ GP +GKT + VA +TG F IN E
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHE 929
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVAN 86
+P L GP GTGKTL+ +A+A+
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALAS 636
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.7 bits (61), Expect = 0.94
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 30 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 137
++ GP G+GKT +A+AV+ + G F I G ++ K
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG--FEYIEGDDLHPK 51
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANE 89
+L YGPPGTGKT A A +
Sbjct: 59 MLFYGPPGTGKTSTILACARK 79
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANET 92
I++ G PGTGKT +A VA T
Sbjct: 11 IIICGTPGTGKTTLAEQVAETT 32
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 15 PPRGILMYGPPGTGK-TLIARAVANETGAFFFLINGP 122
PP + + GPPGTGK TLI V + I GP
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGP 109
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 30 LMYGPPGTGKTLIARAV 80
L+ GPPGTGKT+ + +V
Sbjct: 411 LIQGPPGTGKTVTSASV 427
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANE 89
+L YG PGTGKT A++ E
Sbjct: 55 MLFYGSPGTGKTSTILALSRE 75
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAF 101
VKP +L+ GPP +GK + + + G+F
Sbjct: 277 VKPRTKLLLLGPPKSGKKTLLSRLFFQIGSF 307
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGP-EIMSKLAGESESNLRKAFEEADKNSPA 203
+ YG GTGKT + NE G +N E++ + + +R ++ E N
Sbjct: 214 VFAYGMTGTGKTYSMQGTENEPGIIPLAMNDLFEMVENNSDDDTFQIRISYLEI-YNERI 272
Query: 204 IIFIDELDAIAPKREKTHGEVERRIVSQLL 293
I D RE GEV ++++L
Sbjct: 273 RDLIGNSDEEPRIRENASGEVNVTPLTRVL 302
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 39 GPPGTGKTLIARAVANETGAFFFLIN 116
GP GTGKT +AV+ G F+ N
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKNVFVFN 1915
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 30 LMYGPPGTGKT 62
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVA 83
+P L GP G GKT + +A+A
Sbjct: 530 RPLASFLFLGPTGVGKTALTKALA 553
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 8.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -2
Query: 263 FTVGFLSLWCNSIEFINEDNSRR 195
+TV ++LW +++++ +D RR
Sbjct: 633 YTVKIIALWGRAVKYLKQDGKRR 655
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 150 SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329
+E + F++ I+ + + K+E + IV L L+D +++
Sbjct: 2 AEQKIISLFDDDACTRYTILIASTIGEMREKKESIIDNTDPEIVKYLSQLLDVFRENFDT 61
Query: 330 IVMAATNRPN-SIDPA 374
MA NR ++DP+
Sbjct: 62 WAMAVVNRTGCALDPS 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,828
Number of Sequences: 5004
Number of extensions: 52129
Number of successful extensions: 286
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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