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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0633
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   376   e-104
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   376   e-104
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   375   e-104
At3g56690.1 68416.m06306 calmodulin-binding protein identical to...   210   1e-54
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH...   188   5e-48
At1g05910.1 68414.m00620 cell division cycle protein 48-related ...   188   5e-48
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains...   183   1e-46
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ...   182   2e-46
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains...   182   3e-46
At3g02450.1 68416.m00232 cell division protein ftsH, putative si...   181   5e-46
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c...   180   7e-46
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH...   180   9e-46
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2...   178   3e-45
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc...   178   4e-45
At5g58870.1 68418.m07376 FtsH protease, putative contains simila...   177   6e-45
At2g20140.1 68415.m02353 26S protease regulatory complex subunit...   175   2e-44
At3g47060.1 68416.m05110 FtsH protease, putative contains simila...   174   5e-44
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...   171   4e-43
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3...   170   7e-43
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...   170   1e-42
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...   169   1e-42
At3g16290.1 68416.m02056 FtsH protease, putative contains simila...   169   1e-42
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1...   169   2e-42
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5...   168   3e-42
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains...   167   7e-42
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-...   166   1e-41
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put...   166   1e-41
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta...   166   2e-41
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)    166   2e-41
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...   166   2e-41
At2g26140.1 68415.m03137 FtsH protease, putative contains simila...   165   3e-41
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-...   163   1e-40
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta...   163   1e-40
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-...   160   1e-39
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains...   156   1e-38
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains...   156   1e-38
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id...   156   2e-38
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ...   155   2e-38
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond...   154   5e-38
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains...   152   2e-37
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...   151   4e-37
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...   150   8e-37
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...   149   3e-36
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains...   147   8e-36
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond...   145   2e-35
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains...   145   2e-35
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1...   142   2e-34
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains...   141   4e-34
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ...   140   7e-34
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6...   138   4e-33
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6...   138   4e-33
At1g79560.1 68414.m09275 FtsH protease, putative contains simila...   135   3e-32
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol...   134   4e-32
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI...   126   2e-29
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains...   125   4e-29
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains...   121   6e-28
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    97   1e-20
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains...    93   1e-19
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains...    88   5e-18
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains...    85   6e-17
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains...    83   3e-16
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ...    62   5e-10
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains...    56   3e-08
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains...    56   3e-08
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains...    54   1e-07
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains...    53   2e-07
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains...    52   3e-07
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains...    52   4e-07
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ...    51   9e-07
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc...    50   1e-06
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains...    49   3e-06
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains...    49   4e-06
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains...    48   7e-06
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains...    48   9e-06
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains...    48   9e-06
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains...    46   2e-05
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains...    45   5e-05
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ...    44   8e-05
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains...    44   1e-04
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains...    43   3e-04
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ...    43   3e-04
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains...    42   3e-04
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains...    42   3e-04
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains...    42   4e-04
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains...    42   4e-04
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains...    42   6e-04
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri...    41   8e-04
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ...    40   0.001
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr...    38   0.007
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-...    38   0.009
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel...    37   0.012
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains...    37   0.016
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ...    36   0.022
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains...    36   0.022
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor...    36   0.029
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ...    35   0.050
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    35   0.066
At2g41860.2 68415.m05174 calcium-dependent protein kinase, putat...    34   0.12 
At2g41860.1 68415.m05173 calcium-dependent protein kinase, putat...    34   0.12 
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S...    33   0.15 
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S...    33   0.15 
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    33   0.20 
At4g21880.1 68417.m03164 pentatricopeptide (PPR) repeat-containi...    33   0.27 
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    33   0.27 
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge...    33   0.27 
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge...    33   0.27 
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge...    33   0.27 
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ...    32   0.35 
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    32   0.47 
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p...    32   0.47 
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s...    32   0.47 
At1g66950.1 68414.m07612 ABC transporter family protein similar ...    32   0.47 
At4g27420.1 68417.m03941 ABC transporter family protein D.melano...    31   0.62 
At2g36380.1 68415.m04464 ABC transporter family protein related ...    31   0.62 
At1g73110.1 68414.m08453 ribulose bisphosphate carboxylase/oxyge...    31   0.62 
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    27   0.76 
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    31   0.82 
At4g15230.1 68417.m02333 ABC transporter family protein similar ...    31   1.1  
At3g49210.1 68416.m05378 expressed protein                             31   1.1  
At2g29940.1 68415.m03642 ABC transporter family protein similar ...    31   1.1  
At1g15210.1 68414.m01818 ABC transporter family protein Similar ...    31   1.1  
At4g15215.1 68417.m02332 ABC transporter family protein similar ...    30   1.4  
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik...    30   1.4  
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik...    30   1.4  
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik...    30   1.4  
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR...    30   1.4  
At3g16340.1 68416.m02066 ABC transporter family protein similar ...    30   1.4  
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR...    30   1.4  
At2g26910.1 68415.m03228 ABC transporter family protein similar ...    30   1.4  
At1g73170.1 68414.m08466 expressed protein                             30   1.4  
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    30   1.4  
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d...    30   1.9  
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR...    30   1.9  
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR...    30   1.9  
At1g59870.1 68414.m06745 ABC transporter family protein similar ...    30   1.9  
At5g12180.1 68418.m01429 calcium-dependent protein kinase, putat...    29   2.5  
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR...    29   2.5  
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    29   2.5  
At1g66400.1 68414.m07541 calmodulin-related protein, putative si...    29   2.5  
At1g61950.1 68414.m06988 calcium-dependent protein kinase, putat...    29   2.5  
At1g50700.1 68414.m05701 calcium-dependent protein kinase, putat...    29   2.5  
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains...    29   2.5  
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    29   3.3  
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ...    29   3.3  
At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR...    29   3.3  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    29   3.3  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    29   3.3  
At2g37280.1 68415.m04573 ABC transporter family protein similar ...    29   3.3  
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR...    29   4.4  
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    29   4.4  
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS...    29   4.4  
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff...    29   4.4  
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    29   4.4  
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p...    29   4.4  
At2g34440.1 68415.m04225 MADS-box family protein similar to SP|Q...    29   4.4  
At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR...    28   5.8  
At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR...    28   5.8  
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR...    28   5.8  
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain...    28   5.8  
At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS cla...    28   5.8  
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s...    28   5.8  
At1g05990.1 68414.m00627 calcium-binding protein, putative stron...    28   5.8  
At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp...    28   7.6  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    28   7.6  
At5g07800.1 68418.m00894 flavin-containing monooxygenase family ...    28   7.6  
At3g57530.1 68416.m06406 calcium-dependent protein kinase, putat...    28   7.6  
At3g25620.1 68416.m03189 ABC transporter family protein similar ...    28   7.6  
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN...    28   7.6  
At1g21550.1 68414.m02695 calcium-binding protein, putative conta...    28   7.6  
At1g13280.1 68414.m01542 allene oxide cyclase family protein sim...    28   7.6  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  376 bits (924), Expect = e-104
 Identities = 186/251 (74%), Positives = 212/251 (84%), Gaps = 2/251 (0%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEE
Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
           A+KN+P+IIFIDE+D+IAPKREKT+GEVERRIVSQLLTLMDG+K  +HVIVM ATNRPNS
Sbjct: 296 AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 355

Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
           IDPALRRFGRFDREIDIG+PD  GRLE+LRIHTKNMKL +DVDL +I+ ++HG+VGADLA
Sbjct: 356 IDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLA 415

Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDAR--GSQFSGCLHG*LPVRNDEIVXVGVT*DSGG 716
           +LC+EAALQ IREKMD+IDLEDD IDA    S      H    + N          ++  
Sbjct: 416 ALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVSNEHFHTALGNSN---PSALRETVV 472

Query: 717 EVPNVTWTDIG 749
           EVPNV+W DIG
Sbjct: 473 EVPNVSWEDIG 483



 Score =  175 bits (427), Expect = 2e-44
 Identities = 86/206 (41%), Positives = 132/206 (64%), Gaps = 3/206 (1%)
 Frame = +3

Query: 6    GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
            G+ P +G+L YGPPG GKTL+A+A+ANE  A F  + GPE+++   GESE+N+R+ F++A
Sbjct: 510  GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569

Query: 186  DKNSPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356
             +++P ++F DELD+IA +R  + G+      R+++QLLT MDGM     V ++ ATNRP
Sbjct: 570  RQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 629

Query: 357  NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536
            + ID AL R GR D+ I I +PD   RL I +   +   +  DVD+  +A  + G  GAD
Sbjct: 630  DIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGAD 689

Query: 537  LASLCSEAALQQIREKMDLIDLEDDQ 614
            +  +C  A    IRE ++  D+E+++
Sbjct: 690  ITEICQRACKYAIRENIEK-DIENER 714



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = +1

Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711
           E+LNS+AVS ++F  A+  S+ SALRETV
Sbjct: 443 EILNSMAVSNEHFHTALGNSNPSALRETV 471


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  376 bits (924), Expect = e-104
 Identities = 184/251 (73%), Positives = 213/251 (84%), Gaps = 2/251 (0%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEE
Sbjct: 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 296

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
           A+KN+P+IIFIDE+D+IAPKREKTHGEVERRIVSQLLTLMDG+K  +HVIVM ATNRPNS
Sbjct: 297 AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 356

Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
           IDPALRRFGRFDREIDIG+PD  GRLE+LRIHTKNMKL +DVDL +++ ++HG+VGADLA
Sbjct: 357 IDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLA 416

Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDAR--GSQFSGCLHG*LPVRNDEIVXVGVT*DSGG 716
           +LC+EAALQ IREKMD+IDL+D++IDA    S      H    + N          ++  
Sbjct: 417 ALCTEAALQCIREKMDVIDLDDEEIDAEILNSMAVSNDHFQTALGNSN---PSALRETVV 473

Query: 717 EVPNVTWTDIG 749
           EVPNV+W DIG
Sbjct: 474 EVPNVSWEDIG 484



 Score =  176 bits (429), Expect = 1e-44
 Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 3/206 (1%)
 Frame = +3

Query: 6    GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
            G+ P +G+L YGPPG GKTL+A+A+ANE  A F  I GPE+++   GESE+N+R+ F++A
Sbjct: 511  GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 570

Query: 186  DKNSPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356
             +++P ++F DELD+IA +R  + G+      R+++QLLT MDGM     V ++ ATNRP
Sbjct: 571  RQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 630

Query: 357  NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536
            + IDPAL R GR D+ I I +PD   R +I +   +   +  DVDL  +A  + G  GAD
Sbjct: 631  DIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGAD 690

Query: 537  LASLCSEAALQQIREKMDLIDLEDDQ 614
            +  +C  +    IRE ++  D+E ++
Sbjct: 691  ITEICQRSCKYAIRENIEK-DIEKER 715



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +1

Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711
           E+LNS+AVS D+F+ A+  S+ SALRETV
Sbjct: 444 EILNSMAVSNDHFQTALGNSNPSALRETV 472


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  375 bits (923), Expect = e-104
 Identities = 186/251 (74%), Positives = 212/251 (84%), Gaps = 2/251 (0%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEE
Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
           A+KN+P+IIFIDE+D+IAPKREKT+GEVERRIVSQLLTLMDG+K  +HVIVM ATNRPNS
Sbjct: 296 AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 355

Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
           IDPALRRFGRFDREIDIG+PD  GRLE+LRIHTKNMKL +DVDL +I+ ++HG+VGADLA
Sbjct: 356 IDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLA 415

Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDAR--GSQFSGCLHG*LPVRNDEIVXVGVT*DSGG 716
           +LC+EAALQ IREKMD+IDLEDD IDA    S      H    + N          ++  
Sbjct: 416 ALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSN---PSALRETVV 472

Query: 717 EVPNVTWTDIG 749
           EVPNV+W DIG
Sbjct: 473 EVPNVSWNDIG 483



 Score =  172 bits (418), Expect = 2e-43
 Identities = 86/207 (41%), Positives = 129/207 (62%), Gaps = 4/207 (1%)
 Frame = +3

Query: 6    GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
            G+ P +G+L YGPPG GKTL+A+A+ANE  A F  + GPE+++   GESE+N+R+ F++A
Sbjct: 510  GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569

Query: 186  DKNSPAIIFIDELDAIAPKR----EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
             +++P ++F DELD+IA +R        G    R+++QLLT MDGM     V ++ ATNR
Sbjct: 570  RQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 629

Query: 354  PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
            P+ ID AL R GR D+ I I +PD   RL I +   +   +  DVD+  +A  + G  GA
Sbjct: 630  PDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGA 689

Query: 534  DLASLCSEAALQQIREKMDLIDLEDDQ 614
            D+  +C  A    IRE ++  D+E ++
Sbjct: 690  DITEICQRACKYAIRENIEK-DIEKEK 715



 Score = 35.1 bits (77), Expect = 0.050
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +1

Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711
           E+LNS+AV+ ++F  A+  S+ SALRETV
Sbjct: 443 EILNSMAVTNEHFHTALGNSNPSALRETV 471


>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
            calmodulin-binding protein GI:6760428 from [Arabidopsis
            thaliana]
          Length = 1022

 Score =  210 bits (512), Expect = 1e-54
 Identities = 98/197 (49%), Positives = 143/197 (72%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3    IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
            +G++P +G+L++GPPGTGKT +AR  A  +G  FF +NGPEI+S+  GESE  L + F  
Sbjct: 413  LGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRS 472

Query: 183  ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
            A   +PA++FID+LDAIAP R++   E+ +R+V+ LL LMDG+ ++  V+V+AATNRP+S
Sbjct: 473  ASNATPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDS 532

Query: 363  IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADL 539
            I+PALRR GR DREI+IG+P +T R +IL I  + M+    ++ + Q+A  +HG VGADL
Sbjct: 533  IEPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHSLSNIQVEQLAMATHGFVGADL 592

Query: 540  ASLCSEAALQQIREKMD 590
            ++LC EAA   +R  +D
Sbjct: 593  SALCCEAAFVCLRRHLD 609



 Score =  187 bits (455), Expect = 8e-48
 Identities = 94/213 (44%), Positives = 138/213 (64%), Gaps = 2/213 (0%)
 Frame = +3

Query: 3    IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
            IG +PP GILM+GPPG  KTL+ARAVA+E    F  + GPE+ SK  GESE  +R  F +
Sbjct: 753  IGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAK 812

Query: 183  ADKNSPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356
            A  N+P+IIF DE+D++A  R K +    V  R++SQLL  +DG+ +   V V+AATNRP
Sbjct: 813  ARANAPSIIFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRP 872

Query: 357  NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536
            + ID AL R GRFDR + +G P+ T R  IL+IH + +    D+ L ++A+ + G+ GAD
Sbjct: 873  DKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLKELASITKGYTGAD 932

Query: 537  LASLCSEAALQQIREKMDLIDLEDDQIDARGSQ 635
            ++ +C EAA+  + E +++ ++    + A  SQ
Sbjct: 933  ISLICREAAIAALEESLEMEEISMRHLKAAISQ 965


>At5g15250.1 68418.m01786 FtsH protease, putative similar to
           FtsH-like protein Pftf precursor GI:4325041 from
           [Nicotiana tabacum]
          Length = 687

 Score =  188 bits (457), Expect = 5e-48
 Identities = 98/211 (46%), Positives = 134/211 (63%), Gaps = 5/211 (2%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G K P+G+L+ GPPGTGKTL+A+A+A E G  FF ++G E +    G   S  R  F +
Sbjct: 251 LGAKIPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNK 310

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A  NSP I+FIDE+DA+   R    G   +   + ++Q+LT MDG   ++ VIV+AATNR
Sbjct: 311 AKANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNR 370

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
           P  +D AL R GRFDR++ +G+PD  GR EIL++H+++ KL  DV L  IA  + G  GA
Sbjct: 371 PEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGA 430

Query: 534 DLASLCSEAALQQIREKMDLIDLE--DDQID 620
           DLA+L +EAA+   R   D I L   DD ID
Sbjct: 431 DLANLMNEAAILAGRRGKDKITLTEIDDSID 461


>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
            CDC48-related similar to SP|P54609 Cell division cycle
            protein 48 homolog {Arabidopsis thaliana}; contains Pfam
            profiles PF00004: ATPase AAA family, PF00439: Bromodomain
          Length = 1210

 Score =  188 bits (457), Expect = 5e-48
 Identities = 96/208 (46%), Positives = 134/208 (64%), Gaps = 6/208 (2%)
 Frame = +3

Query: 9    VKPPRGILMYGPPGTGKTLIARAVA---NETG--AFFFLINGPEIMSKLAGESESNLRKA 173
            + PPRG+L+ GPPGTGKTLIARA+A   ++ G    F++  G +++SK  GE+E  L+  
Sbjct: 412  ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLL 471

Query: 174  FEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
            FEEA +N P+IIF DE+D +AP R     ++   IVS LL LMDG+     V+++ ATNR
Sbjct: 472  FEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 531

Query: 354  PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL-XQIAAESHGHVG 530
             ++ID ALRR GRFDRE +  +P    R EIL IHT+  K     +L  ++AA   G+ G
Sbjct: 532  VDAIDGALRRPGRFDREFNFSLPGCEARAEILDIHTRKWKHPPTRELKEELAATCVGYCG 591

Query: 531  ADLASLCSEAALQQIREKMDLIDLEDDQ 614
            ADL +LC+EAA++  REK   +   DD+
Sbjct: 592  ADLKALCTEAAIRAFREKYPQVYTSDDK 619


>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family ('A'TPases
            'A'ssociated with diverse cellular 'A'ctivities)
          Length = 820

 Score =  183 bits (446), Expect = 1e-46
 Identities = 110/270 (40%), Positives = 155/270 (57%), Gaps = 21/270 (7%)
 Frame = +3

Query: 3    IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
            IGVKPP GIL +GPPG GKT +A A+ANE G  F+ I+  E++S ++G SE N+R+ F +
Sbjct: 262  IGVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSK 321

Query: 183  ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGM----------KKSSHVI 332
            A + +P+I+FIDE+DAI  KRE    E+E+RIV+QLLT MDG             +  V+
Sbjct: 322  AYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVL 381

Query: 333  VMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAE 512
            V+ ATNRP+++DPALRR GRF+ EI +  PD   R EIL +  + ++L    D  +IA  
Sbjct: 382  VIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARL 441

Query: 513  SHGHVGADLASLCSEAALQQIREKMDLI------DLEDDQIDARGSQFSGCLHG*LPVRN 674
            + G VGADL S+   A  + I+  +D        D EDD+   R       L       +
Sbjct: 442  TPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDGEDDKSWLRMPWPEEELEKLFVKMS 501

Query: 675  D-----EIVXVGVT*DSGGEVPNVTWTDIG 749
            D      +V   +T +    VP+V W D+G
Sbjct: 502  DFEEAVNLVQASLTREGFSIVPDVKWDDVG 531



 Score =  153 bits (370), Expect = 2e-37
 Identities = 83/205 (40%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
 Frame = +3

Query: 6    GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
            GV    G L+YGPPG GKTLIA+A ANE GA F  I G E+++K  GESE  +R  F+ A
Sbjct: 558  GVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRA 617

Query: 186  DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSI 365
               +P +IF DE+DA+   R K    V  R+++Q L  +DG ++  +V V+ ATNRP+ +
Sbjct: 618  RTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGER-RNVYVIGATNRPDVV 676

Query: 366  DPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAES-HGHVGADLA 542
            DPA  R GRF   + + +P+A  R  IL+   +   +   VDL  IA  +  G  GADLA
Sbjct: 677  DPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLA 736

Query: 543  SLCSEAALQQIREKMDLIDLEDDQI 617
             L  +A  Q + E +   +  +D +
Sbjct: 737  HLVQKATFQAVEEMIGSSESSEDDV 761


>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
           dependent protease VAR2 GI:7650138 from [Arabidopsis
           thaliana]
          Length = 695

 Score =  182 bits (443), Expect = 2e-46
 Identities = 93/211 (44%), Positives = 135/211 (63%), Gaps = 5/211 (2%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G K P+G+L+ GPPGTGKTL+A+A+A E G  FF I+G E +    G   S +R  F++
Sbjct: 255 VGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKK 314

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A +N+P I+F+DE+DA+  +R    G   +   + ++QLLT MDG + ++ VIV+AATNR
Sbjct: 315 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNR 374

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
            + +D AL R GRFDR++ + +PD  GR +IL++H  N K  +DV L  IA  + G  GA
Sbjct: 375 ADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGA 434

Query: 534 DLASLCSEAALQQIREKMDLIDLE--DDQID 620
           DLA+L +EAA+   R     I  +  DD ID
Sbjct: 435 DLANLLNEAAILAGRRARTSISSKEIDDSID 465


>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 603

 Score =  182 bits (442), Expect = 3e-46
 Identities = 105/256 (41%), Positives = 149/256 (58%), Gaps = 7/256 (2%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G+K PRG+L+YGPPGTGKT + RAV  E  A   +++   +    AGESE  LR+AF E
Sbjct: 51  LGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAE 110

Query: 183 ADKNS----PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSS---HVIVMA 341
           A  ++    P++IFIDE+D + P+R+    E + RI SQL TLMD  K SS    V+V+A
Sbjct: 111 ASSHAVSDKPSVIFIDEIDVLCPRRDARR-EQDVRIASQLFTLMDSNKPSSSAPRVVVVA 169

Query: 342 ATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHG 521
           +TNR ++IDPALRR GRFD  +++  P+   RL+IL+++TK + L   VDL  IA   +G
Sbjct: 170 STNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNG 229

Query: 522 HVGADLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSGCLHG*LPVRNDEIVXVGVT 701
           +VGADL +LC EA +   +   D + L         S     ++             G+T
Sbjct: 230 YVGADLEALCREATISASKRSSDSLILTSQDFKIAKSVVGPSINR------------GIT 277

Query: 702 *DSGGEVPNVTWTDIG 749
                E+P VTW D+G
Sbjct: 278 ----VEIPKVTWDDVG 289



 Score =  180 bits (438), Expect = 9e-46
 Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 4/199 (2%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G+ P RGIL++GPPG  KT +A+A AN   A FF ++  E+ S   GE E+ LR  F+ 
Sbjct: 315 MGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQR 374

Query: 183 ADKNSPAIIFIDELDAIAPKR----EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350
           A   SP+IIF DE D +A KR          V  R++S LLT MDG++++  ++V+AATN
Sbjct: 375 ARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATN 434

Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
           RP +ID AL R GRFD  + +  PD   R EIL++HT+NM LGDDVDL +IA E+    G
Sbjct: 435 RPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTG 494

Query: 531 ADLASLCSEAALQQIREKM 587
           A+L  LC E+    +RE +
Sbjct: 495 AELEGLCRESGTVSLRENI 513


>At3g02450.1 68416.m00232 cell division protein ftsH, putative
           similar to SWISS-PROT:P46469 cell division protein ftsH
           homolog [Lactococcus lactis]; contains Pfam domain,
           PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
           diverse cellular 'A'ctivities)
          Length = 622

 Score =  181 bits (440), Expect = 5e-46
 Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G + PRG+L+ GPPGTGKTL+ARAVA E G  FF ++  E +    G   + +R  F  
Sbjct: 362 LGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNA 421

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
           A KNSP+IIFIDELDA+  KR ++  +   + ++QLLT MDG +  + VIV+AATNRP +
Sbjct: 422 ARKNSPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEA 481

Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGHVGAD 536
           +D AL R GRF R++ +  PD  GR +IL IH +++ L +D  L    +A+ + G VGAD
Sbjct: 482 LDSALCRPGRFSRKVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFVGAD 541

Query: 537 LASLCSEAALQQIREKMDLIDLED 608
           LA++ +EAAL   R   + +  ED
Sbjct: 542 LANIVNEAALLAARRGGEAVARED 565


>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
           chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
           division protein ftsH homolog 1, chloroplast            
           precursor (EC 3.4.24.-) [Arabidopsis thaliana]
          Length = 716

 Score =  180 bits (439), Expect = 7e-46
 Identities = 93/210 (44%), Positives = 132/210 (62%), Gaps = 3/210 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G K P+G L+ GPPGTGKTL+ARAVA E G  FF     E +    G   S +R  FE+
Sbjct: 290 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEK 349

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A   +P I+FIDE+DA+  +R    G   +   + ++QLLT MDG   +S VIV+AATNR
Sbjct: 350 AKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 409

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
           P+ +D AL R GRFDR++ +  PD  GR++IL++H++   LG DVD  ++A  + G  GA
Sbjct: 410 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGA 469

Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDA 623
           DL +L +EAA+   R ++  I  +D+  DA
Sbjct: 470 DLQNLMNEAAILAARRELKEIS-KDEISDA 498


>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
           protease GI:13183728 from [Medicago sativa]
          Length = 704

 Score =  180 bits (438), Expect = 9e-46
 Identities = 92/210 (43%), Positives = 132/210 (62%), Gaps = 3/210 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G K P+G L+ GPPGTGKTL+ARAVA E G  FF     E +    G   S +R  FE+
Sbjct: 278 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEK 337

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A   +P I+FIDE+DA+  +R    G   +   + ++QLLT MDG   +S VIV+AATNR
Sbjct: 338 AKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 397

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
           P+ +D AL R GRFDR++ +  PD  GR++IL++H++   +G DVD  ++A  + G  GA
Sbjct: 398 PDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGA 457

Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDA 623
           DL +L +EAA+   R ++  I  +D+  DA
Sbjct: 458 DLQNLMNEAAILAARRELKEIS-KDEISDA 486


>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
           almost identical to 26S proteasome AAA-ATPase subunit
           RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
           melanogaster 26S proteasome subunit 4 ATPase,
           PID:g1066065
          Length = 443

 Score =  178 bits (434), Expect = 3e-45
 Identities = 89/197 (45%), Positives = 125/197 (63%), Gaps = 3/197 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IG+KPP+G+++YG PGTGKTL+A+AVAN T A F  + G E++ K  G+    +R+ F  
Sbjct: 217 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRV 276

Query: 183 ADKNSPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           AD  SP+I+FIDE+DA+  KR   H  GE E +R + +LL  +DG      V V+ ATNR
Sbjct: 277 ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 336

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
             S+DPAL R GR DR+I+  +PD   R  I +IHT  M L +DV+L +         GA
Sbjct: 337 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGA 396

Query: 534 DLASLCSEAALQQIREK 584
           D+ ++C+EA L  +RE+
Sbjct: 397 DIKAICTEAGLLALRER 413


>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
           dependent protease GI:7650138 from [Arabidopsis
           thaliana]
          Length = 685

 Score =  178 bits (433), Expect = 4e-45
 Identities = 91/211 (43%), Positives = 134/211 (63%), Gaps = 5/211 (2%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G + P+G+L+ GPPGTGKTL+A+A+A E G  FF I+G E +    G   S +R  F++
Sbjct: 248 VGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKK 307

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A +N+P I+F+DE+DA+  +R    G   +   + ++QLLT MDG + ++ VIV+AATNR
Sbjct: 308 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNR 367

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
            + +D AL R GRFDR++ + +PD  GR +IL++H+ N K    V L  IA  + G  GA
Sbjct: 368 ADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGA 427

Query: 534 DLASLCSEAALQQIREKMDLIDLE--DDQID 620
           DLA+L +EAA+   R     I  +  DD ID
Sbjct: 428 DLANLLNEAAILAGRRGKTAISSKEIDDSID 458


>At5g58870.1 68418.m07376 FtsH protease, putative contains
           similarity to cell division protein FtsH homolog 3
           SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
           sp.}
          Length = 806

 Score =  177 bits (431), Expect = 6e-45
 Identities = 95/208 (45%), Positives = 129/208 (62%), Gaps = 6/208 (2%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G +PPRG+L+ G PGTGKTL+A+AVA E+   F   +  E +    G   S +R  F  
Sbjct: 357 LGARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFAR 416

Query: 183 ADKNSPAIIFIDELDAIAPKRE----KTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350
           A K +P+IIFIDE+DA+A  R+        +   + ++QLLT MDG   SS VIV+ ATN
Sbjct: 417 AKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATN 476

Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT--KNMKLGDDVDLXQIAAESHGH 524
           R + +DPALRR GRFDR + +  PD  GR  IL++H   K + LGDDV+L  IA+ + G 
Sbjct: 477 RADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGF 536

Query: 525 VGADLASLCSEAALQQIREKMDLIDLED 608
            GADLA+L +EAAL   R+    +D  D
Sbjct: 537 TGADLANLVNEAALLAGRKSKMTVDKID 564


>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
           putative similar to Swiss-Prot:P48601 26S protease
           regulatory subunit 4 (P26S4) [Drosophila melanogaster]
          Length = 443

 Score =  175 bits (427), Expect = 2e-44
 Identities = 88/197 (44%), Positives = 125/197 (63%), Gaps = 3/197 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IG+KPP+G+++YG PGTGKTL+A+AVAN T A F  + G E++ K  G+    +R+ F  
Sbjct: 217 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRV 276

Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           AD  SP+I+FIDE+DA+  KR    + GE E +R + +LL  +DG      V V+ ATNR
Sbjct: 277 ADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 336

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
             S+DPAL R GR DR+I+  +PD   R  I +IHT  M L +DV+L +         GA
Sbjct: 337 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGA 396

Query: 534 DLASLCSEAALQQIREK 584
           D+ ++C+EA L  +RE+
Sbjct: 397 DIKAICTEAGLLALRER 413


>At3g47060.1 68416.m05110 FtsH protease, putative contains
           similarity to FtsH protease GI:13183728 from [Medicago
           sativa]
          Length = 802

 Score =  174 bits (424), Expect = 5e-44
 Identities = 94/194 (48%), Positives = 125/194 (64%), Gaps = 6/194 (3%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G +PPRG+L+ G PGTGKTL+A+AVA E    F   +  E +    G   S +R  F  
Sbjct: 353 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFAR 412

Query: 183 ADKNSPAIIFIDELDAIAPKRE---KTHGEVER-RIVSQLLTLMDGMKKSSHVIVMAATN 350
           A K +P+IIFIDE+DA+A  R+   +     ER + ++QLLT MDG   +S VIV+ ATN
Sbjct: 413 AKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 472

Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT--KNMKLGDDVDLXQIAAESHGH 524
           R + +DPALRR GRFDR + +  PD  GR  ILR+H   K + LGDDV+L  IA+ + G 
Sbjct: 473 RADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGF 532

Query: 525 VGADLASLCSEAAL 566
            GADLA+L +EAAL
Sbjct: 533 TGADLANLVNEAAL 546


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score =  171 bits (416), Expect = 4e-43
 Identities = 87/205 (42%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G+KPP+G+L+YGPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  
Sbjct: 168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNY 227

Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A ++ P IIF+DE+DAI  +R  E T  + E +R + +LL  +DG  +   V ++ ATNR
Sbjct: 228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 287

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
           P+ +DPAL R GR DR+I+I +P+   R+EIL+IH   +    ++D   I     G  GA
Sbjct: 288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGA 347

Query: 534 DLASLCSEAALQQIREKMDLIDLED 608
           DL ++C+EA +  IR + D +  ED
Sbjct: 348 DLRNICTEAGMFAIRAERDYVIHED 372


>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
           identical to 26S proteasome AAA-ATPase subunit RPT3
           GI:6652882 from [Arabidopsis thaliana]
          Length = 408

 Score =  170 bits (414), Expect = 7e-43
 Identities = 87/201 (43%), Positives = 128/201 (63%), Gaps = 3/201 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IG+ PPRG+L+YGPPGTGKT++A+AVAN T A F  + G E + K  GE    +R  F  
Sbjct: 184 IGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRL 243

Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A +N+PAIIFIDE+DAIA  R   +T  + E +RI+ +LL  MDG  ++ +V V+ ATNR
Sbjct: 244 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR 303

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
            +++DPAL R GR DR+I+  +PD   +  + ++ T  M L D+VDL    +       A
Sbjct: 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAA 363

Query: 534 DLASLCSEAALQQIREKMDLI 596
           ++A++C EA +  +R+   +I
Sbjct: 364 EIAAICQEAGMHAVRKNRYVI 384


>At4g23940.1 68417.m03443 FtsH protease, putative contains similarity
            to zinc dependent protease GI:7650138 from [Arabidopsis
            thaliana]
          Length = 946

 Score =  170 bits (413), Expect = 1e-42
 Identities = 92/218 (42%), Positives = 131/218 (60%), Gaps = 11/218 (5%)
 Frame = +3

Query: 3    IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
            +G+KPP G+L+ GPPG GKTL+A+A+A E G  F+ + G E +  L G   + +R  F+ 
Sbjct: 458  MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKR 517

Query: 183  ADKNSPAIIFIDELDAIAPKREKTHGEVERRI-----------VSQLLTLMDGMKKSSHV 329
            A  N P++IFIDE+DA+A +R+    E   ++           ++QLL  +DG      V
Sbjct: 518  AKVNKPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTLNQLLIELDGFDTGKGV 577

Query: 330  IVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAA 509
            I + ATNR + +DPAL R GRFDR+I +  P+A GRL+IL+IH   +K+ D VDL   A+
Sbjct: 578  IFLGATNRRDLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMSDSVDLSSYAS 637

Query: 510  ESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDA 623
               G  GA LA L  EAAL  +R+  + I L+ D  DA
Sbjct: 638  NLPGWSGAKLAQLVQEAALVAVRKTHNSI-LQSDMDDA 674


>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score =  169 bits (412), Expect = 1e-42
 Identities = 86/205 (41%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G+KPP+G+L+YGPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  
Sbjct: 168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNY 227

Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A ++ P IIF+DE+DAI  +R  E T  + E +R + +LL  +DG      V ++ ATNR
Sbjct: 228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNR 287

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
           P+ +DPAL R GR DR+I+I +P+   R++IL+IH   +    ++D   I   + G  GA
Sbjct: 288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGA 347

Query: 534 DLASLCSEAALQQIREKMDLIDLED 608
           DL ++C+EA +  IR + D +  ED
Sbjct: 348 DLRNICTEAGMFAIRAERDYVIHED 372


>At3g16290.1 68416.m02056 FtsH protease, putative contains similarity
            to cell division protein FtsH GI:1652085 from
            [Synechocystis sp. PCC 6803]
          Length = 876

 Score =  169 bits (412), Expect = 1e-42
 Identities = 91/215 (42%), Positives = 135/215 (62%), Gaps = 7/215 (3%)
 Frame = +3

Query: 6    GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
            GVK P GIL+ GPPG GKTL+A+AVA E G  FF I+  + +    G   S +R  ++EA
Sbjct: 439  GVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEA 498

Query: 186  DKNSPAIIFIDELDAIAPKRE--KTHGEVER-RIVSQLLTLMDGMKKSSHVIVMAATNRP 356
             +N+P+++FIDELDA+  +R   K  G  ER   ++QLL  +DG +    VI +A+TNRP
Sbjct: 499  RENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVSLDGFEGRGEVITIASTNRP 558

Query: 357  NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536
            + +DPAL R GRFDR+I I  P   GR+EIL++H +   + +D+D   +A+ + G VGA+
Sbjct: 559  DILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDLDYMAVASMTDGMVGAE 618

Query: 537  LASLCSEAALQQIREKMDLIDLED----DQIDARG 629
            LA++   AA+  +R+    +  +D     QI+ RG
Sbjct: 619  LANIVEIAAINMMRDGRTELTTDDLLQAAQIEERG 653


>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
           similar to 26S proteasome ATPase subunit GI:1395190 from
           [Spinacia oleracea]
          Length = 426

 Score =  169 bits (411), Expect = 2e-42
 Identities = 85/217 (39%), Positives = 128/217 (58%), Gaps = 3/217 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G+ PP+G+L YGPPGTGKTL+ARAVAN T A F  + G E++ K  GE    +R+ F+ 
Sbjct: 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQM 256

Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A      I+F DE+DAI   R  +   G+ E +R + +++  +DG     ++ V+ ATNR
Sbjct: 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
           P+++DPAL R GR DR+++ G+PD   R +I +IHT+ M    D+    +A       GA
Sbjct: 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGA 376

Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSG 644
           D+ S+C+EA +  IR +   +  E D +DA      G
Sbjct: 377 DIRSVCTEAGMYAIRARRKTV-TEKDFLDAVNKVIKG 412


>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
           identical to GB:AAF22525 GI:6652886 from [Arabidopsis
           thaliana]
          Length = 424

 Score =  168 bits (409), Expect = 3e-42
 Identities = 84/205 (40%), Positives = 127/205 (61%), Gaps = 3/205 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +GV+PP+G+L+YGPPGTGKTL+ARA A +T A F  + GP+++    G+    +R AF+ 
Sbjct: 200 LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQL 259

Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A + +P IIFIDE+DAI  KR   +  G+ E +R + +LL  +DG      + V+AATNR
Sbjct: 260 AKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNR 319

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
            + +DPAL R GR DR+I+   P    R  IL+IH++ M +  DV+  ++A  +    GA
Sbjct: 320 ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGA 379

Query: 534 DLASLCSEAALQQIREKMDLIDLED 608
            L ++C EA +  +R     ++ ED
Sbjct: 380 QLKAVCVEAGMLALRRDATEVNHED 404


>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family ('A'TPases
            'A'ssociated with diverse cellular 'A'ctivities)
          Length = 941

 Score =  167 bits (406), Expect = 7e-42
 Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 5/206 (2%)
 Frame = +3

Query: 6    GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
            G++   G+L+YGPPGTGKTL+A+AVA E    F  + GPE+++   GESE N+R  FE+A
Sbjct: 687  GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFEKA 746

Query: 186  DKNSPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGMKKSSH-VIVMAATNRP 356
                P +IF DELD++AP R  +   G V  R+VSQ+L  +DG+  SS  + ++ A+NRP
Sbjct: 747  RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRP 806

Query: 357  NSIDPALRRFGRFDREIDIGI-PDATGRLEILRIHTKNMKLGDDVDLXQIAAESHG-HVG 530
            + IDPAL R GRFD+ + +G+  DA+ R  +L+  T+  KL +DV L  +A +      G
Sbjct: 807  DLIDPALLRPGRFDKLLYVGVNADASYRERVLKALTRKFKLSEDVSLYSVAKKCPSTFTG 866

Query: 531  ADLASLCSEAALQQIREKMDLIDLED 608
            AD+ +LC++A  Q  + K+   D  D
Sbjct: 867  ADMYALCADAWFQAAKRKVSKSDSGD 892


>At5g53170.1 68418.m06610 FtsH protease, putative similar to
           ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
           musculus]
          Length = 806

 Score =  166 bits (404), Expect = 1e-41
 Identities = 87/201 (43%), Positives = 123/201 (61%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G K P+GIL+ G PGTGKTL+A+A+A E G  FF   G E      G     +R  F+ 
Sbjct: 390 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQA 449

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
           A K +P IIFIDE+DA+   R++  G  ++ +  QLL  MDG +++  +IVMAATN P+ 
Sbjct: 450 AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTL-HQLLVEMDGFEQNEGIIVMAATNLPDI 508

Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
           +DPAL R GRFDR I +  PD  GR EIL ++ +   + +DVD+  IA  + G  GADLA
Sbjct: 509 LDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLA 568

Query: 543 SLCSEAALQQIREKMDLIDLE 605
           +L + AA++   E  + +  E
Sbjct: 569 NLVNIAAIKAAVEGAEKLSSE 589


>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
           putative identical to SP:O04019 from [Arabidopsis
           thaliana]
          Length = 423

 Score =  166 bits (404), Expect = 1e-41
 Identities = 84/205 (40%), Positives = 126/205 (61%), Gaps = 3/205 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G++PP+G+L+YGPPGTGKTL+ARA A +T A F  + GP+++    G+    +R AF  
Sbjct: 199 LGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLL 258

Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
           A + SP IIFIDE+DAI  KR   +  G+ E +R + +LL  +DG      + V+AATNR
Sbjct: 259 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
            + +DPAL R GR DR+I+   P    R  IL+IH++ M +  DV+  ++A  +    GA
Sbjct: 319 ADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGA 378

Query: 534 DLASLCSEAALQQIREKMDLIDLED 608
            L ++C EA +  +R     ++ ED
Sbjct: 379 QLKAVCVEAGMLALRRDATEVNHED 403


>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
           putative almost identical to 26S proteasome AAA-ATPase
           subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
           almost identical to a member of conserved Sug1 CAD
           family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
          Length = 419

 Score =  166 bits (403), Expect = 2e-41
 Identities = 83/206 (40%), Positives = 136/206 (66%), Gaps = 4/206 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G+  P+G+L+YGPPGTGKTL+ARAVA+ T   F  ++G E++ K  GE    +R+ F  
Sbjct: 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVM 249

Query: 183 ADKNSPAIIFIDELDAIAPKREKT---HGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATN 350
           A +++P+IIF+DE+D+I   R ++   +G+ E +R + +LL  +DG + S+ + V+ ATN
Sbjct: 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309

Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
           R + +D AL R GR DR+I+   P+   R +IL+IH++ M L   +DL +IA + +G  G
Sbjct: 310 RIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369

Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608
           A+L ++C+EA +  +RE+   +  ED
Sbjct: 370 AELKAVCTEAGMFALRERRVHVTQED 395


>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
          Length = 419

 Score =  166 bits (403), Expect = 2e-41
 Identities = 83/206 (40%), Positives = 136/206 (66%), Gaps = 4/206 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G+  P+G+L+YGPPGTGKTL+ARAVA+ T   F  ++G E++ K  GE    +R+ F  
Sbjct: 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVM 249

Query: 183 ADKNSPAIIFIDELDAIAPKREKT---HGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATN 350
           A +++P+IIF+DE+D+I   R ++   +G+ E +R + +LL  +DG + S+ + V+ ATN
Sbjct: 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309

Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
           R + +D AL R GR DR+I+   P+   R +IL+IH++ M L   +DL +IA + +G  G
Sbjct: 310 RIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369

Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608
           A+L ++C+EA +  +RE+   +  ED
Sbjct: 370 AELKAVCTEAGMFALRERRVHVTQED 395


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
            PROSITE domains, PS00674: AAA-protein family signature
            and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score =  166 bits (403), Expect = 2e-41
 Identities = 85/203 (41%), Positives = 121/203 (59%), Gaps = 6/203 (2%)
 Frame = +3

Query: 3    IGVKPPRGILMYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLR 167
            +G+ PPRGIL++G PGTGKTL+ RA+            +F   G + + K  G++E  LR
Sbjct: 748  LGLTPPRGILLHGHPGTGKTLVVRALIGSLARGNRRIAYFARKGADCLGKYVGDAERQLR 807

Query: 168  KAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAAT 347
              F+ A+K  P+IIF DE+D +APKR +   +    +VS LL L+DG+K    V+V+ AT
Sbjct: 808  LLFQVAEKCQPSIIFFDEIDGLAPKRSRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGAT 867

Query: 348  NRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNM-KLGDDVDLXQIAAESHGH 524
            N P++IDPALRR GRFDREI   +P    R  I+ +HT+   K      L  IA E+ G 
Sbjct: 868  NYPDAIDPALRRPGRFDREIYFPLPSVDDRAAIISLHTRKWPKPVSGYLLKWIAKETAGF 927

Query: 525  VGADLASLCSEAALQQIREKMDL 593
             GAD+ +LC++AA+  +     L
Sbjct: 928  AGADIQALCTQAAMIALNRSFPL 950


>At2g26140.1 68415.m03137 FtsH protease, putative contains
           similarity to YME1 GI:295582, a member of the
           ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
           genes from [Saccharomyces cerevisiae]
          Length = 717

 Score =  165 bits (401), Expect = 3e-41
 Identities = 87/202 (43%), Positives = 119/202 (58%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G K P+G+L+ GPPGTGKT++ARA+A E G  FF  +G E      G     +R  F  
Sbjct: 255 LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSA 314

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
           A K SP IIFIDE+DAI   R     +  +  ++Q+L  +DG K++  +IV+AATN P S
Sbjct: 315 AKKCSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPES 374

Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
           +D AL R GRFDR I +  PD  GR +IL  H   +   +DVDL  IA  + G  GADLA
Sbjct: 375 LDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLA 434

Query: 543 SLCSEAALQQIREKMDLIDLED 608
           +L + AAL+   +    + + D
Sbjct: 435 NLVNVAALKAAMDGSKDVTMSD 456


>At2g29080.1 68415.m03535 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 809

 Score =  163 bits (395), Expect = 1e-40
 Identities = 89/199 (44%), Positives = 126/199 (63%), Gaps = 5/199 (2%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G K P+G L+ GPPGTGKTL+A+A A E+G  F  I+G + M    G   S +R  F+E
Sbjct: 350 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQE 409

Query: 183 ADKNSPAIIFIDELDAIAPKREK--THGEVERR-IVSQLLTLMDGMKKSSHVIVMAATNR 353
           A + +P+IIFIDE+DAI   R +    G  ER   ++QLL  MDG   ++ V+V+A TNR
Sbjct: 410 ARQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 469

Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGHV 527
           P+ +D AL R GRFDR+I I  PD  GR +I +I+ K +KL  +      ++AA + G  
Sbjct: 470 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFA 529

Query: 528 GADLASLCSEAALQQIREK 584
           GAD+A++C+EAAL   R +
Sbjct: 530 GADIANVCNEAALIAARHE 548


>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
           putative similar to  26S proteasome AAA-ATPase subunit
           RPT1 SP:Q41365 from [Spinacia oleracea]
          Length = 464

 Score =  163 bits (395), Expect = 1e-40
 Identities = 84/211 (39%), Positives = 125/211 (59%), Gaps = 4/211 (1%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G+ PP+G+L YGPPG+GKTL+ARAVAN TGA F  + G E++ K  GE    +R+ F+ 
Sbjct: 234 LGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQM 293

Query: 183 ADKNSPAIIFIDELDAIAPKR----EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350
           A      I+F DE+DAI   R      +  EV+R ++ ++L  +DG     ++ V+ ATN
Sbjct: 294 ARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTML-EILYQLDGFDARGNIKVLMATN 352

Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
           RP+ +DPAL R GR DR+++  +PD  GR +I +IHT+ M    D+    +A       G
Sbjct: 353 RPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTG 412

Query: 531 ADLASLCSEAALQQIREKMDLIDLEDDQIDA 623
           AD+ S+C EA +  I  +   +  E D +DA
Sbjct: 413 ADIRSVCIEAGMYAIGARRKSV-TEKDFLDA 442


>At1g07510.1 68414.m00804 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 813

 Score =  160 bits (388), Expect = 1e-39
 Identities = 88/200 (44%), Positives = 126/200 (63%), Gaps = 6/200 (3%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G K P+G L+ GPPGTGKTL+A+A A E+   F  I+G + M    G   S +R  F+E
Sbjct: 355 LGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQE 414

Query: 183 ADKNSPAIIFIDELDAIAPKREK---THGEVERR-IVSQLLTLMDGMKKSSHVIVMAATN 350
           A + +P+IIFIDE+DAI   R +   + G  ER   ++QLL  MDG   ++ V+V+A TN
Sbjct: 415 ARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 474

Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGH 524
           RP+ +D AL R GRFDR+I I  PD  GR +I +I+ K +KL  +      ++AA + G 
Sbjct: 475 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGF 534

Query: 525 VGADLASLCSEAALQQIREK 584
            GAD+A++C+EAAL   R +
Sbjct: 535 AGADIANVCNEAALIAARHE 554


>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family
          Length = 829

 Score =  156 bits (379), Expect = 1e-38
 Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
 Frame = +3

Query: 9    VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
            +KP RGIL++GPPGTGKT++A+A+A E GA F  ++   I SK  GE E N+R  F  A 
Sbjct: 552  LKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAS 611

Query: 189  KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359
            K SP IIF+DE+D++  +R +    E  R+I ++ ++  DG+  K    ++V+AATNRP 
Sbjct: 612  KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPF 671

Query: 360  SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
             +D A+ R  RF+R I +G+P    R +ILR      K+ +++D  ++A  + G+ G+DL
Sbjct: 672  DLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGYTGSDL 729

Query: 540  ASLCSEAALQQIREKMDLIDLEDDQ 614
             +LC+ AA + +RE +    ++D +
Sbjct: 730  KNLCTTAAYRPVRELIQQERIKDTE 754


>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family
          Length = 824

 Score =  156 bits (379), Expect = 1e-38
 Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
 Frame = +3

Query: 9    VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
            +KP RGIL++GPPGTGKT++A+A+A E GA F  ++   I SK  GE E N+R  F  A 
Sbjct: 547  LKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAS 606

Query: 189  KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359
            K SP IIF+DE+D++  +R +    E  R+I ++ ++  DG+  K    ++V+AATNRP 
Sbjct: 607  KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPF 666

Query: 360  SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
             +D A+ R  RF+R I +G+P    R +ILR      K+ +++D  ++A  + G+ G+DL
Sbjct: 667  DLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGYTGSDL 724

Query: 540  ASLCSEAALQQIREKMDLIDLEDDQ 614
             +LC+ AA + +RE +    ++D +
Sbjct: 725  KNLCTTAAYRPVRELIQQERIKDTE 749


>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
            identical to peroxisome biogenesis protein PEX1
            [Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
            Pfam profile PF00004: ATPase, AAA family; identical to
            cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
            partial cds GI:12006271
          Length = 1130

 Score =  156 bits (378), Expect = 2e-38
 Identities = 81/191 (42%), Positives = 115/191 (60%)
 Frame = +3

Query: 27   ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 206
            +L+YGPPG GKT I  A A      F  + GPE+++K  G SE  +R  F +A   +P I
Sbjct: 881  VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCI 940

Query: 207  IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRF 386
            +F DE D+IAPKR   +  V  R+V+Q LT +DG++  + V V AAT+RP+ +DPAL R 
Sbjct: 941  LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRP 1000

Query: 387  GRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASLCSEAAL 566
            GR DR +    P    RLEIL + ++ + + DD+DL  IA  + G  GADL +L S+A L
Sbjct: 1001 GRLDRLLLCDFPSPPERLEILTVLSRKLLMADDIDLEPIALMTEGFSGADLQALLSDAQL 1060

Query: 567  QQIREKMDLID 599
              + E ++  D
Sbjct: 1061 AAVHEYLNRED 1071



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 19/266 (7%)
 Frame = +3

Query: 9    VKPPRGILMYGPPGTGKTLIARAVA------NETGAFFFLINGPEIMSKLAGESESNLRK 170
            +  P  IL+YGPPG+GKT++ARA A       +  A   L++   +  +        L  
Sbjct: 590  IPSPGHILIYGPPGSGKTILARAAAKYFEEQKDLLAHVILVSCSTLALEKVQHIHHVLSS 649

Query: 171  AFEEADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLT-LMD--GMKKSSH-- 326
               E  +++P++I +D+LD+I      T G    V   ++++ LT ++D  G  ++S   
Sbjct: 650  VIAEGLEHAPSVIILDDLDSIISSSSDTEGTQASVGVTMLTKFLTDVIDDYGEYRNSSCG 709

Query: 327  ---VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR--IHTKNMKLGDDVD 491
               +  +A+      I   L   GRFD  + +  P  + R  IL+  I  + +   +D+ 
Sbjct: 710  IGPLAFVASVQSLEQIPQTLSSSGRFDFHVQLAAPATSERGAILKHEIQKRLLDCSEDI- 768

Query: 492  LXQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSGCLHG*LPVR 671
            L  +AA+  G+   DL  L   A    I   + L +    + +     F+  +H  +PV 
Sbjct: 769  LLNLAAKCEGYDAYDLEILVDRAVHAAIGRHLPL-ESNISKYNLVKEDFTRAMHDFVPVA 827

Query: 672  NDEIVXVGVT*DSGGEVPNVTWTDIG 749
              +I        S  E   + W D+G
Sbjct: 828  MRDIT------KSASEGGRLGWEDVG 847


>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
           zinc dependent protease [Arabidopsis thaliana]
           GI:7650138; contains Pfam profile PF00004: ATPase AAA
           family
          Length = 855

 Score =  155 bits (377), Expect = 2e-38
 Identities = 85/210 (40%), Positives = 131/210 (62%), Gaps = 9/210 (4%)
 Frame = +3

Query: 6   GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
           G+  P+G+L++GPPGTGKTL+A+A+A E G  FF  NG + +    G + S ++  F  +
Sbjct: 345 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASS 404

Query: 186 DKNSPAIIFIDELDAIAPKR---EKTHGEVER-RIVSQLLTLMDGMK-KSSHVIVMAATN 350
              +P+IIFIDE+DAI  KR   +   G  ER + + Q+LT MDG K  +S V+V+ ATN
Sbjct: 405 RSYAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVTTSQVLVIGATN 464

Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN--MKLGDDVD--LXQIAAESH 518
           R + +DPAL R GRFD+ I +G+P   GRL IL++H +N   +  D+ +  L ++A  + 
Sbjct: 465 RLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRSEDEKEELLQEVAENTE 524

Query: 519 GHVGADLASLCSEAALQQIREKMDLIDLED 608
              GA+L ++ +EA +   R+ +D I  E+
Sbjct: 525 DFTGAELQNVLNEAGILTARKDLDYIGREE 554


>At4g27680.1 68417.m03980 MSP1 protein, putative /
           intramitochondrial sorting protein, putative similar to
           Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
           [Saccharomyces cerevisiae]; contains Pfam domain,
           PF00004: ATPase, AAA family
          Length = 398

 Score =  154 bits (374), Expect = 5e-38
 Identities = 78/194 (40%), Positives = 117/194 (60%), Gaps = 2/194 (1%)
 Frame = +3

Query: 15  PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
           P +G+L+YGPPGTGKT++A+A+A E+GA F  +    +MSK  G+++  +   F  A K 
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKL 177

Query: 195 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH--VIVMAATNRPNSID 368
            PAIIFIDE+++   +R  T  E    + ++ + L DG     H  V+V+AATNRP+ +D
Sbjct: 178 QPAIIFIDEVESFLGQRRSTDHEAMANMKTEFMALWDGFSTDPHARVMVLAATNRPSELD 237

Query: 369 PALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASL 548
            A+ R  R  +  +IGIPD   R EIL++  K  ++  D+D   IA    G+ G+D+  L
Sbjct: 238 EAILR--RLPQAFEIGIPDRRERAEILKVTLKGERVEPDIDFDHIARLCEGYTGSDIFEL 295

Query: 549 CSEAALQQIREKMD 590
           C +AA   IRE +D
Sbjct: 296 CKKAAYFPIREILD 309


>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family
          Length = 726

 Score =  152 bits (369), Expect = 2e-37
 Identities = 82/205 (40%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
 Frame = +3

Query: 9    VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
            +KP RGIL++GPPGTGKT++A+A+ANE GA F  ++   I SK  GE E N+R  F  A 
Sbjct: 445  LKPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAA 504

Query: 189  KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGMKKSS--HVIVMAATNRPN 359
            K SP IIF+DE+D++  +R +    E  R+I ++ +T  DG+  ++   ++V+AATNRP 
Sbjct: 505  KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMSNAGDRILVLAATNRPF 564

Query: 360  SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
             +D A+ R  RF+R I +G+P    R +ILR      K  +++D  ++A  + G+ G+DL
Sbjct: 565  DLDEAIIR--RFERRIMVGLPSVESREKILRTLLSKEKT-ENLDFQELAQMTDGYSGSDL 621

Query: 540  ASLCSEAALQQIREKMDLIDLEDDQ 614
             + C+ AA + +RE +    L+D +
Sbjct: 622  KNFCTTAAYRPVRELIKQECLKDQE 646


>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score =  151 bits (367), Expect = 4e-37
 Identities = 81/215 (37%), Positives = 131/215 (60%), Gaps = 15/215 (6%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFE 179
           +G+K  +G+L++GPPGTGKTL+AR +     G    ++NGPE++SK  GE+E N+R  F 
Sbjct: 245 LGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLFA 304

Query: 180 EADKNSPA--------IIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGMKKSSHV 329
           +A+++           +I  DE+DAI   R  T     V   IV+QLLT +DG++  ++V
Sbjct: 305 DAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVEALNNV 364

Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMK----LGDDVDLX 497
           +++  TNR + +D AL R GR + +++I +PD  GRL+IL+IHT  MK    LG D++L 
Sbjct: 365 LLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQ 424

Query: 498 QIAAESHGHVGADLASLCSEAALQQIREKMDLIDL 602
           ++AA +  + GA+L  +   A    +  ++ + DL
Sbjct: 425 ELAARTKNYSGAELEGVVKSATSYALNRQLSMDDL 459



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +3

Query: 30  LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE-SNLRKAFEEADKNSPAI 206
           L+ GP G+GKT +A  +  ++   +  I   E M  L+  ++ +++ K FE+A K+  +I
Sbjct: 534 LLEGPSGSGKTALAATIGIDSDFPYVKIVSAETMIGLSESTKCAHIVKVFEDAYKSPMSI 593

Query: 207 IFIDELDAI 233
           I +D+++ +
Sbjct: 594 IILDDIERL 602


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
            profile PF00004: ATPase, AAA family
          Length = 1122

 Score =  150 bits (364), Expect = 8e-37
 Identities = 82/209 (39%), Positives = 129/209 (61%), Gaps = 3/209 (1%)
 Frame = +3

Query: 12   KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
            KP +GIL++GPPGTGKT++A+AVA E  A F  I+   I SK  GE E  ++  F  A K
Sbjct: 853  KPCKGILLFGPPGTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASK 912

Query: 192  NSPAIIFIDELDAIAPKRE-KTHGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNS 362
             SP++IF+DE+D++  +RE     E  R+I ++ +   DG+  ++   V+V+AATNRP  
Sbjct: 913  MSPSVIFVDEVDSMLGRREHPREHEASRKIKNEFMMHWDGLTTQERERVLVLAATNRPFD 972

Query: 363  IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
            +D A+ R  R  R + +G+PD + R  IL++      L  D+D+ +IA+ ++G+ G+DL 
Sbjct: 973  LDEAVIR--RLPRRLMVGLPDTSNRAFILKVILAKEDLSPDLDIGEIASMTNGYSGSDLK 1030

Query: 543  SLCSEAALQQIREKMDLIDLEDDQIDARG 629
            +LC  AA + I+E ++    E D   A+G
Sbjct: 1031 NLCVTAAHRPIKEILEKEKRERDAALAQG 1059


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to Spastin
            (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
            (Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
            mitochondrial sorting protein 1 (MSP1) protein
            (TAT-binding homolog 4) (Swiss-Prot:P28737)
            [Saccharomyces cerevisiae]
          Length = 1265

 Score =  149 bits (360), Expect = 3e-36
 Identities = 81/196 (41%), Positives = 121/196 (61%), Gaps = 3/196 (1%)
 Frame = +3

Query: 12   KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
            KP +GIL++GPPGTGKT++A+AVA E GA F  I+   I SK  GE E  ++  F  A K
Sbjct: 996  KPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1055

Query: 192  NSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNS 362
             +P++IF+DE+D++  +RE     E  R++ ++ +   DG+  K    V+V+AATNRP  
Sbjct: 1056 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFD 1115

Query: 363  IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
            +D A+ R  R  R + + +PDAT R +IL +     ++  DVDL  IA  + G+ G+DL 
Sbjct: 1116 LDEAVIR--RLPRRLMVNLPDATNRSKILSVILAKEEIAPDVDLEAIANMTDGYSGSDLK 1173

Query: 543  SLCSEAALQQIREKMD 590
            +LC  AA   IRE ++
Sbjct: 1174 NLCVTAAHFPIREILE 1189


>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to
            mitochondrial sorting protein 1 (MSP1) (TAT-binding
            homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
          Length = 1252

 Score =  147 bits (356), Expect = 8e-36
 Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 3/196 (1%)
 Frame = +3

Query: 12   KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
            KP +GIL++GPPGTGKT++A+AVA E GA F  I+   I SK  GE E  ++  F  A K
Sbjct: 983  KPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1042

Query: 192  NSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNS 362
             +P++IF+DE+D++  +RE     E  R++ ++ +   DG+  K    V+V+AATNRP  
Sbjct: 1043 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMINWDGLRTKDKERVLVLAATNRPFD 1102

Query: 363  IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
            +D A+ R  R  R + + +PD+  R +IL +     ++ +DVDL  IA  + G+ G+DL 
Sbjct: 1103 LDEAVIR--RLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAIANMTDGYSGSDLK 1160

Query: 543  SLCSEAALQQIREKMD 590
            +LC  AA   IRE ++
Sbjct: 1161 NLCVTAAHLPIREILE 1176


>At5g53540.1 68418.m06653 MSP1 protein, putative /
           intramitochondrial sorting protein, putative similar to
           Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
           [Saccharomyces cerevisiae]; contains Pfam domain,
           PF00004: ATPase, AAA family
          Length = 403

 Score =  145 bits (352), Expect = 2e-35
 Identities = 73/194 (37%), Positives = 118/194 (60%), Gaps = 2/194 (1%)
 Frame = +3

Query: 15  PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
           P +G+L+YGPPGTGKT++A+A+A E+ A F  +    +MSK  G+++  +   F  A K 
Sbjct: 121 PQKGVLLYGPPGTGKTMLAKAIARESEAVFINVKVSNLMSKWFGDAQKLVSAVFSLAYKL 180

Query: 195 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNSID 368
            PAIIFIDE+D+   +R  T  E    + ++ + L DG    +++ V+V+AATNRP+ +D
Sbjct: 181 QPAIIFIDEVDSFLGQRRSTDNEAMSNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 240

Query: 369 PALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASL 548
            A+ R  RF +  +IG+PD   R +IL++  K   +  D++  +IA     + G+D+  L
Sbjct: 241 EAILR--RFPQSFEIGMPDCQERAQILKVVLKGESVESDINYDRIARLCEDYTGSDIFEL 298

Query: 549 CSEAALQQIREKMD 590
           C +AA   IRE ++
Sbjct: 299 CKKAAYFPIREILE 312


>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family
          Length = 640

 Score =  145 bits (352), Expect = 2e-35
 Identities = 81/215 (37%), Positives = 126/215 (58%), Gaps = 3/215 (1%)
 Frame = +3

Query: 9    VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
            ++P +GIL++GPPGTGKTL+A+A+A E GA F  I G  + SK  G++E   +  F  A 
Sbjct: 383  LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFAT 442

Query: 189  KNSPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359
            K +P IIF+DE+D++   R   +  E  RR+ ++ +   DG+  K S  ++++ ATNRP 
Sbjct: 443  KLAPVIIFVDEIDSLLGARGGSSEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPF 502

Query: 360  SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
             +D A+ R  R  R I + +PDA  RL+IL+I      L  D    ++A E+ G+ G+DL
Sbjct: 503  DLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTPENLESDFQFEKLAKETEGYSGSDL 560

Query: 540  ASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSG 644
             +LC  AA + ++E      L+++Q  AR     G
Sbjct: 561  KNLCIAAAYRPVQEL-----LQEEQKGARAEASPG 590


>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
           (KTN1) [Arabidopsis thaliana] GI:14133602
          Length = 523

 Score =  142 bits (345), Expect = 2e-34
 Identities = 77/201 (38%), Positives = 124/201 (61%), Gaps = 9/201 (4%)
 Frame = +3

Query: 12  KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
           +P +G+LM+GPPGTGKTL+A+AVA E G  FF ++   + SK  GESE  +R  F+ A  
Sbjct: 270 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARA 329

Query: 192 NSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGMKKSSH--------VIVMAA 344
            +P+ IFIDE+D++   R  +   E  RR+ S+LL  +DG+  ++         V+V+AA
Sbjct: 330 YAPSTIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAA 389

Query: 345 TNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGH 524
           TN P  ID ALRR  R ++ I I +PD   R  ++ I+ + +++  DV++  +A  + G+
Sbjct: 390 TNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGY 447

Query: 525 VGADLASLCSEAALQQIREKM 587
            G DL ++C +A++  +R K+
Sbjct: 448 SGDDLTNVCRDASMNGMRRKI 468


>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 439

 Score =  141 bits (342), Expect = 4e-34
 Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 3/194 (1%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
           ++P +GIL++GPPGTGKTL+A+A+A E GA F  I G  + SK  G++E   +  F  A 
Sbjct: 182 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFAS 241

Query: 189 KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359
           K +P IIF+DE+D++   R      E  RR+ ++ +   DG+  K S  ++++ ATNRP 
Sbjct: 242 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPF 301

Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
            +D A+ R  R  R I + +PDA  RL+IL+I      L    +  ++A E+ G+ G+DL
Sbjct: 302 DLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTPENLETGFEFDKLAKETEGYSGSDL 359

Query: 540 ASLCSEAALQQIRE 581
            +LC  AA + ++E
Sbjct: 360 KNLCIAAAYRPVQE 373


>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
           SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
           Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
           domain
          Length = 487

 Score =  140 bits (340), Expect = 7e-34
 Identities = 72/193 (37%), Positives = 116/193 (60%), Gaps = 3/193 (1%)
 Frame = +3

Query: 12  KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
           +P RG+L++GPPG GKT++A+AVA+E+ A FF ++   + SK  GE+E  ++  F+ A  
Sbjct: 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLVKTLFQVAIS 306

Query: 192 NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH--VIVMAATNRPNSI 365
             P++IF+DE+D+I   R  +  E  RR+ S+ L   DG+  +    VI++ ATN+P  +
Sbjct: 307 RQPSVIFMDEIDSIMSTRSTSENEASRRLKSEFLIQFDGVTSNPDDLVIIIGATNKPQEL 366

Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADLA 542
           D A+ R  R  + I + +PD+  R  + +   K       D D+ +I  E+ G+ G+DL 
Sbjct: 367 DDAVLR--RLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSDGDIDKIVKETEGYSGSDLQ 424

Query: 543 SLCSEAALQQIRE 581
           +LC EAA+  IRE
Sbjct: 425 ALCEEAAMMPIRE 437


>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
           subunit [Strongylocentrotus purpuratus] GI:3098603;
           contains Pfam profile PF00004: ATPase AAA family
          Length = 393

 Score =  138 bits (334), Expect = 4e-33
 Identities = 73/205 (35%), Positives = 125/205 (60%), Gaps = 4/205 (1%)
 Frame = +3

Query: 15  PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
           P +GIL++GPPGTGKT++A+AVA E    FF I+   ++SK  G+SE  +R  F+ A  +
Sbjct: 144 PWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHH 203

Query: 195 SPAIIFIDELDAIAPKR---EKTHGEVERRIVSQLLTLMDGMKKSSH-VIVMAATNRPNS 362
           +P+ IF+DE+DAI  +R    ++  E  RR+ ++LL  MDG++K++  V V+AATN P  
Sbjct: 204 APSTIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLAATNLPWE 263

Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
           +D A+ R  R ++ I + +PD   R  +  +   +    + +    +  +S G+ G+D+ 
Sbjct: 264 LDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIR 321

Query: 543 SLCSEAALQQIREKMDLIDLEDDQI 617
            LC EAA+Q +R  + +++  +D +
Sbjct: 322 ILCKEAAMQPLRRTLAILEDREDVV 346


>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
           subunit [Strongylocentrotus purpuratus] GI:3098603;
           contains Pfam profile PF00004: ATPase AAA family
          Length = 384

 Score =  138 bits (334), Expect = 4e-33
 Identities = 73/205 (35%), Positives = 125/205 (60%), Gaps = 4/205 (1%)
 Frame = +3

Query: 15  PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
           P +GIL++GPPGTGKT++A+AVA E    FF I+   ++SK  G+SE  +R  F+ A  +
Sbjct: 135 PWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHH 194

Query: 195 SPAIIFIDELDAIAPKR---EKTHGEVERRIVSQLLTLMDGMKKSSH-VIVMAATNRPNS 362
           +P+ IF+DE+DAI  +R    ++  E  RR+ ++LL  MDG++K++  V V+AATN P  
Sbjct: 195 APSTIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLAATNLPWE 254

Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
           +D A+ R  R ++ I + +PD   R  +  +   +    + +    +  +S G+ G+D+ 
Sbjct: 255 LDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIR 312

Query: 543 SLCSEAALQQIREKMDLIDLEDDQI 617
            LC EAA+Q +R  + +++  +D +
Sbjct: 313 ILCKEAAMQPLRRTLAILEDREDVV 337


>At1g79560.1 68414.m09275 FtsH protease, putative contains similarity
            to chloroplast FtsH protease GI:5804782 from [Nicotiana
            tabacum]
          Length = 1008

 Score =  135 bits (326), Expect = 3e-32
 Identities = 77/215 (35%), Positives = 123/215 (57%), Gaps = 16/215 (7%)
 Frame = +3

Query: 21   RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESNLRKAFEEADKNS 197
            RG+L+ GPPGTGKTL AR +A E+G  F   +G E   S+ +G ++ N  + F  A +N+
Sbjct: 527  RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAKIN--EMFSIARRNA 584

Query: 198  PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH---------VIVMAATN 350
            PA +F+DE+DAIA +  +      R     L+  +DG K+ +          VI + ATN
Sbjct: 585  PAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATN 643

Query: 351  RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
            RP+ +D    R GR DR + IG+PDA  R++I  +H+    L +D+D  ++   + G  G
Sbjct: 644  RPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSG 703

Query: 531  ADLASLCSEAALQQIRE------KMDLIDLEDDQI 617
            AD+ +L +EAA+  +R+      + D++D+ D Q+
Sbjct: 704  ADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQL 738


>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
           sorting protein-related similar to SP|P46467 SKD1
           protein (Vacuolar sorting protein 4b) {Mus musculus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF04212: MIT domain
          Length = 435

 Score =  134 bits (325), Expect = 4e-32
 Identities = 70/196 (35%), Positives = 116/196 (59%), Gaps = 3/196 (1%)
 Frame = +3

Query: 12  KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
           +P R  L+YGPPGTGK+ +A+AVA E  + FF ++  +++SK  GESE  +   FE A +
Sbjct: 163 RPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARE 222

Query: 192 NSPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGM-KKSSHVIVMAATNRPNSI 365
           ++P+IIF+DE+D++   R E    E  RRI ++LL  M G+      V+V+AATN P ++
Sbjct: 223 SAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYAL 282

Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADLA 542
           D A+RR  RFD+ I I +P+A  R  + ++H  +      + D   +  ++ G  G+D++
Sbjct: 283 DQAIRR--RFDKRIYIPLPEAKARQHMFKVHLGDTPHNLTEPDFEYLGQKTEGFSGSDVS 340

Query: 543 SLCSEAALQQIREKMD 590
               +   + +R+  D
Sbjct: 341 VCVKDVLFEPVRKTQD 356


>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
           SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
           contains Pfam domain, PF00004: ATPase, AAA family
          Length = 287

 Score =  126 bits (303), Expect = 2e-29
 Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 6/197 (3%)
 Frame = +3

Query: 15  PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
           P +G+L++GPPGTGKT+I +A+A E  A FF I+   + SK  GE E  +R  F  A   
Sbjct: 42  PGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCR 101

Query: 195 SPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGMKK-SSHVIVMAATNRPNSI 365
            PA+IF+DE+D++  +R K+ GE E  RR+ +Q L  M+G    S  ++++ ATNRP  +
Sbjct: 102 QPAVIFVDEIDSLLSQR-KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQEL 160

Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKN---MKLGDDVDLXQIAAESHGHVGAD 536
           D A RR  R  + + I +P +  R  I++   K      L DD D+  I   + G+ G+D
Sbjct: 161 DEAARR--RLTKRLYIPLPSSEARAWIIQNLLKKDGLFTLSDD-DMNIICNLTEGYSGSD 217

Query: 537 LASLCSEAALQQIREKM 587
           + +L  +A +  +RE +
Sbjct: 218 MKNLVKDATMGPLREAL 234


>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 609

 Score =  125 bits (301), Expect = 4e-29
 Identities = 72/182 (39%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
 Frame = +3

Query: 18  PRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK-N 194
           PR +L  GPPGTGKT  AR +AN+ G     +    +MSK  GESE  L   F +A++  
Sbjct: 361 PRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELP 420

Query: 195 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 374
             AIIF+DE+DA A  R+    E  RR++S LL  +DG ++   V+V+AATNR   +DPA
Sbjct: 421 DGAIIFLDEIDAFAISRDSEMHEATRRVLSVLLRQIDGFEQEKKVVVIAATNRKQDLDPA 480

Query: 375 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASLCS 554
           L    RFD  I   +PD   R EI+  + K +      +L Q+A  +    G D+  +C 
Sbjct: 481 L--ISRFDSMIMFDLPDLQTRQEIIAQYAKQL---SKPELVQLAQATEAMSGRDIRDVCQ 535

Query: 555 EA 560
            A
Sbjct: 536 GA 537


>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family
          Length = 1025

 Score =  121 bits (291), Expect = 6e-28
 Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 3/209 (1%)
 Frame = +3

Query: 12   KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
            KP  GIL++GP GTGKT++A+AVA E GA   LIN    MS+   E E  ++  F  A K
Sbjct: 768  KPCNGILLFGPSGTGKTMLAKAVATEAGAN--LINMS--MSRWFSEGEKYVKAVFSLASK 823

Query: 192  NSPAIIFIDELDAIAPK-REKTHGEVERRIVSQLLTLMDGMK--KSSHVIVMAATNRPNS 362
             SP+IIF+DE++++  + R KT  E    I++      DG++  +   V+V+AATNRP  
Sbjct: 824  ISPSIIFLDEVESMLHRYRLKTKNEF---IIN-----WDGLRTNEKERVLVLAATNRPFD 875

Query: 363  IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
            +D A+ R  R    + +G+PDA  R +IL++      L  D D+ ++A+ ++G+ G DL 
Sbjct: 876  LDEAVIR--RLPHRLMVGLPDARSRSKILKVILSKEDLSPDFDIDEVASMTNGYSGNDLK 933

Query: 543  SLCSEAALQQIREKMDLIDLEDDQIDARG 629
            +LC  AA ++I E ++    E D   A G
Sbjct: 934  NLCVTAARRRIIEIVEKEKSERDAAVAEG 962


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL-AGESESNLRKAFE 179
           +G + PRG+L+ G  GTGKT +A A+A E       +   E+ + L  G+S +N+R+ F+
Sbjct: 452 MGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSAANVRELFQ 511

Query: 180 EADKNSPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350
            A   +P IIF+++ D  A  R K   T  +     ++QLL  +DG +K   V++MA T 
Sbjct: 512 TARDLAPVIIFVEDFDLFAGVRGKFVHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 571

Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILR---IHTKNMKLGDDVDLXQIAAES 515
               ID ALRR GR DR   +  P    R  IL      T + +L D VD  +++ ++
Sbjct: 572 NHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRELVDLVDWRKVSEKT 629


>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family associated with
           various cellular activities (AAA)
          Length = 636

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 49/158 (31%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
 Frame = +3

Query: 15  PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK- 191
           P R ++ YGPPGTGKT++AR +A ++G  + ++ G ++ + L  ++ + + + F+ A K 
Sbjct: 384 PFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 442

Query: 192 NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371
           N   ++FIDE DA   +R  T+    +R     L    G  +S  ++++ ATNRP  +D 
Sbjct: 443 NKGLLLFIDEADAFLCERNSTYMSEAQRSALNALLFRTG-DQSRDIVLVLATNRPGDLDS 501

Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDD 485
           A+    R D  I+  +P    R ++L+++     +GDD
Sbjct: 502 AVT--DRIDEVIEFPLPGEEERFKLLKLYLNKYLMGDD 537


>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 620

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
 Frame = +3

Query: 15  PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK- 191
           P R ++ YGPPGTGKT++AR +A ++G  + ++ G ++ + L  ++ + + + F+ A K 
Sbjct: 369 PFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGSQAVTKIHQIFDWAKKS 427

Query: 192 NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371
           N   ++FIDE DA   +R  T+    +R     L    G  +S  ++++ ATNR   +D 
Sbjct: 428 NKGLLLFIDEADAFLCERNSTYMSEAQRSALNALLFRTG-DQSRDIVLVLATNRRGDLDS 486

Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIH-TKNMKLGDD 485
           A+    R D  I+  +P    R ++L ++  K +K+GD+
Sbjct: 487 AVT--DRIDEVIEFPLPGEEERFKLLNLYLNKYLKMGDN 523


>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 644

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
 Frame = +3

Query: 15  PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
           P R IL YGPPGTGKT+ AR +A  +G  + L+ G ++ + L  ++ + + + F+ + K+
Sbjct: 397 PFRNILFYGPPGTGKTMAARELARRSGLDYALMTGGDV-APLGAQAVTKIHQLFDWSKKS 455

Query: 195 SPA-IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371
               ++FIDE DA   +R KT+    +R     L    G  +S  +++  ATNRP  +D 
Sbjct: 456 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDS 514

Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIH 458
           A+    R D  ++  +P    R ++L ++
Sbjct: 515 AVA--DRIDETLEFPLPGEEERFKLLNLY 541


>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 639

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
 Frame = +3

Query: 15  PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
           P R IL++GPPGTGKT+ AR +A ++G  + L+ G ++ + L  ++ + + + F+   K+
Sbjct: 396 PFRNILLHGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGAQAVTKIHELFDWGKKS 454

Query: 195 SPA-IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371
               ++FIDE DA   +R KT+    +R     L    G  +S  +++  ATNRP  +D 
Sbjct: 455 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDS 513

Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIH 458
           A+    R D  ++  +P    R ++L ++
Sbjct: 514 AVA--DRVDEVLEFPLPGEEERFKLLNLY 540


>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
           HPV16 E1 protein binding protein [Homo sapiens]
           gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
           ATPase, AAA family ('A'TPases 'A'ssociated with diverse
           cellular 'A'ctivities)
          Length = 467

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 173
           R IL++GPPGTGKT + +A+A +                +N   + SK   ES   + K 
Sbjct: 203 RIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKWFSESGKLVAKL 262

Query: 174 FEE-----ADKNSPAIIFIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGMKKSSH 326
           F++      +  +   + IDE++++A  R+      E     R+V+ LLT MD +K + +
Sbjct: 263 FQKIQEMVEEDGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSAPN 322

Query: 327 VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR 452
           VI++  +N   +ID A     R D +  +G P    R EILR
Sbjct: 323 VIILTTSNITTAIDVAF--VDRADIKAYVGPPTLHVRYEILR 362


>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 505

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G    RG L+YGPPGTGK+ +  A+AN      + +    +M       +S+LR+    
Sbjct: 248 VGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVYDLQLASVM------RDSDLRRLL-L 300

Query: 183 ADKNSPAIIFIDELDAIA--------PKREKTHGEVERRI-VSQLLTLMDGMKKS--SHV 329
           A +N  +I+ I+++D           P   K  GE +  + +S LL  +DG+  S     
Sbjct: 301 ATRNR-SILVIEDIDCAVDLPNRIEQPVEGKNRGESQGPLTLSGLLNFIDGLWSSCGDER 359

Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIG 416
           I++  TN  + +DPAL R GR D  I +G
Sbjct: 360 IIIFTTNHKDRLDPALLRPGRMDMHIYMG 388


>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 470

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G    RG L+YGPPGTGKT +  A+AN      F I   ++ S      +++LR+    
Sbjct: 240 VGKPWKRGYLLYGPPGTGKTSLVAAIAN---YLKFDIYDLQLASV---REDADLRRLLLG 293

Query: 183 ADKNSPAIIFIDELDA-------IAPKREKTHGEVERRIVSQLLTLMDGMKKS--SHVIV 335
              +S  I+ ++++D        + PK +          +S LLT +DG+  S     IV
Sbjct: 294 TTNSS--ILLVEDIDCAVDLHTRLQPKTQDDTKGSSMLTLSGLLTCIDGLWSSCGDERIV 351

Query: 336 MAATNRPNSIDPALRRFGRFDREIDIG 416
           +  T     +DPAL R GR D  I +G
Sbjct: 352 IFTTTHKERLDPALLRPGRMDMHIHMG 378


>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 494

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFF------LINGPEIMSKLAGESESNL 164
           +G    RG L+YGPPGTGK+ +  A+AN      F      +    ++ S L   +  ++
Sbjct: 239 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELSSIYENAQLKSILLSTTNRSI 298

Query: 165 RKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKS--SHVIVM 338
               E+ D +S  ++   E D      E  +G V    +S LL  +DG+  S     I++
Sbjct: 299 -LVIEDIDCSSAEVV-DREADEYQEYEEGYYGRV---TLSGLLNFVDGLWSSFGDERIIV 353

Query: 339 AATNRPNSIDPALRRFGRFDREIDI 413
             TN    +DPAL R GR D  I++
Sbjct: 354 FTTNHKERLDPALLRPGRMDMHINM 378


>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
           similarity to mitochondrial ATPase (AAA family) Bcs1p,
           Saccharomyces cerevisiae, Swiss Prot:P32839
          Length = 248

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
           RG L+YGPPGTGK+ +  A+AN      + I   +I S    + ++ LR+     +  S 
Sbjct: 32  RGYLLYGPPGTGKSSLVAAIANFMN---YSIYDLQIQSV---KDDAMLRQILTSTENRS- 84

Query: 201 AIIFIDELDAIAP--------KREKTHGEVERR--------IVSQLLTLMDGMKKS--SH 326
            I+ I++LD            K E  +GE + +         +S LL  +DG+  S    
Sbjct: 85  -ILLIEDLDCSGADTTCRKENKDETEYGENQNKKKKKDPKVTLSGLLNFVDGLWSSCVEE 143

Query: 327 VIVMAATNRPNSIDPALRRFGRFDREI--DIGIPDATGRLEILRIHTKNMKLGDDVD 491
            I++  TN    +DPAL R GR D  I  D   P    +L  L +  +  +L D ++
Sbjct: 144 RIIIFTTNHKEKLDPALLRPGRMDVHILMDYCTPIVFKKLAALYLEIEEHELFDPIE 200


>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 451

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G    RG L+YGPPGTGK+ +  A+AN      + ++    ++ L   +E  LR+    
Sbjct: 242 VGKAWKRGYLLYGPPGTGKSSLIAAIANHLNFDIYDLD----LTSLNNNAE--LRRLLMS 295

Query: 183 ADKNSPAIIFIDELD-AIAPKREKTHGE----VERRI-VSQLLTLMDGMKKS--SHVIVM 338
               S  I+ ++++D +I  K   T  E    + + + +S LL  +DG+  S  +  I++
Sbjct: 296 TANRS--ILVVEDIDCSIELKDRSTDQENNDPLHKTVTLSGLLNFVDGLWSSCGNERIIV 353

Query: 339 AATNRPNSIDPALRRFGRFDREI 407
             TN    +DPAL R GR D  I
Sbjct: 354 FTTNYREKLDPALLRPGRMDMHI 376


>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 495

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G    RG L+YGPPGTGK+ +  A+AN      F +     +S +    E  L++    
Sbjct: 238 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLE----LSSIYDNGE--LKRVLLS 291

Query: 183 ADKNSPAIIFIDELDAIAPKREK-THGEVERRI-----VSQLLTLMDGMKKS--SHVIVM 338
               S  I+ I+++D  A  R++    + + +I     +S +L  +DG+  S     I++
Sbjct: 292 TTNRS--ILVIEDIDCNAEVRDREAENQEDEQIKGKVTLSGILNFIDGLWSSFGDERIIV 349

Query: 339 AATNRPNSIDPALRRFGRFDREIDI 413
             TN    +DPAL R GR D  I++
Sbjct: 350 FTTNHKERLDPALLRPGRMDVHINM 374


>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
           Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
           EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
           contains Pfam profile: ATPase family PF00004
           gene_id:K17E7.100 contains Pfam profile: ATPase family
           PF00004
          Length = 533

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G    RG L+YGPPGTGK+ +  A+AN      F I   ++ S    + +++LR     
Sbjct: 240 VGKAWKRGYLLYGPPGTGKSSLVAAMAN---YLKFDIYDLQLASV---QGDAHLRSLL-- 291

Query: 183 ADKNSPAIIFIDELDA-------IAPKREKTH--GEVE---RRIVSQLLTLMDGMKKS-- 320
              N+ +I+ I+++D        + P  E +   G V+      +S LL  +DG+  S  
Sbjct: 292 LATNNSSILLIEDIDCSVDLPTRLQPPTETSQPLGAVQVSKPLTLSGLLNCIDGLWSSCG 351

Query: 321 SHVIVMAATNRPNSIDPALRRFGRFDREIDIG 416
           +  I++  TN    +DPAL R GR D  I +G
Sbjct: 352 NERIIIFTTNNKEKLDPALLRPGRMDMHIYMG 383


>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
           nuclear gene encoding mitochondrial protein - Homo
           sapiens, EMBL:AF026849 contains Pfam profile: ATPase
           family PF00004
          Length = 470

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IG    RG L+YGPPGTGK+ +  A+AN      + I   E+    A ++ S L+K    
Sbjct: 236 IGKAWKRGYLLYGPPGTGKSTMISAMAN---LLNYNIYDLEL---TAVKNNSELKKLLTA 289

Query: 183 ADKNSPAIIFIDELDAIAP------KRE----KTHGEVERR----IVSQLLTLMDGMKKS 320
              +S +II I+++D  A       K+E    + +G+ ++      +S LL  +DG+  +
Sbjct: 290 T--SSKSIIVIEDIDCSADFTSNRIKKESNSRERYGKEDKDENSVTLSGLLNFIDGIWSA 347

Query: 321 --SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
                IV+  TN    +DPAL R GR D  I++
Sbjct: 348 CGQERIVVFTTNHLEKLDPALIRRGRMDMHIEL 380


>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 576

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G    RG L+YGPPGTGK+ +  A+AN      F I   E+    A  + S LR+    
Sbjct: 294 VGKAWKRGYLLYGPPGTGKSSLIAAMANHLN---FDIYDLEL---TAVNNNSELRRLLIA 347

Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERR------------IVSQLLTLMDGMKKS-- 320
               S  I+ ++++D     +++T  E  R              +S LL  +DG+  S  
Sbjct: 348 TANRS--ILIVEDIDCSLELKDRTSDEPPRESDDIEDPRYKKVTLSGLLNFIDGLWSSCG 405

Query: 321 SHVIVMAATNRPNSIDPALRRFGRFDREI 407
              I++  TN    +D AL R GR D  I
Sbjct: 406 DERIIIFTTNYKEKLDAALLRPGRMDMHI 434


>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 475

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 29/232 (12%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
           RG L+YGPPGTGK+ +  A+AN      + I   +I S      +  LR+        S 
Sbjct: 240 RGYLLYGPPGTGKSSMVAAIANH---MKYHIYDLQIQSV---RDDGELREILTSTKNRS- 292

Query: 201 AIIFIDELD--AIAPKREKT----------HGEVERR--------IVSQLLTLMDGMKKS 320
            I+ I+++D  A A +R ++           GE ++R         +S LL  +DG+  S
Sbjct: 293 -ILLIEDIDCGADASRRRQSKKKEEDGGEDDGEPQKRKKKFEVGISLSGLLNFVDGLWSS 351

Query: 321 --SHVIVMAATNRPNSIDPALRRFGRFDREI--DIGIPDATGRLEILRIHTKNMKLGDDV 488
                I++  TN    +DPAL R GR D  I  D   P    +L  L + T    L D +
Sbjct: 352 CGEEKIIIFTTNHKEKLDPALLRPGRMDVHILMDNCTPFVFKKLVALYLKTDEHVLFDPI 411

Query: 489 D--LXQIAAESHGHVGADLASLCSEAALQQIREKMDLIDL---EDDQIDARG 629
           +  + ++++         +AS  ++ AL+ + E ++   L   ED  ++  G
Sbjct: 412 EKLILEVSSTPAEVTQQLMASKNADIALKGLAEFLENKKLKKGEDSSVEEEG 463


>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 475

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IG    RG L++GPPGTGK+ +  A+AN      + I   E+    A  + S LRK    
Sbjct: 231 IGKAWKRGYLLHGPPGTGKSTMIAAMANHLN---YSIYDLEL---TAIRNNSELRKLLTA 284

Query: 183 ADKNSPAIIFIDELDA---IAPKREKTHGEVERR--------------IVSQLLTLMDGM 311
              +S +II I+++D    +  KR+K    +  R               +S LL  +DG+
Sbjct: 285 T--SSKSIIVIEDIDCSLDLTGKRKKEKNLMTSREDGEQGTEEDKSFVTLSGLLNFIDGI 342

Query: 312 KKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
             +     I++  TN    +DPAL R GR D  I++
Sbjct: 343 WSACGQERIIIFTTNHFEKLDPALIRRGRMDMHIEL 378


>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 512

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
           RG L+YGPPGTGK+ +  A+AN  G   + +   E+      ++ S LRK   +   +S 
Sbjct: 239 RGYLLYGPPGTGKSSLIAAMANYLGYDIYDLELTEV------QNNSELRKLLMKT--SSK 290

Query: 201 AIIFIDELDAIAP-----KREKTHGEVE----------------RRIVSQLLTLMDGMKK 317
           +II I+++D         K +K +G  E                   +S LL   DG+  
Sbjct: 291 SIIVIEDIDCSISLTKRGKNKKKNGSYEYDPGLTNGSGLEEPGSSVTLSGLLNFTDGLWS 350

Query: 318 --SSHVIVMAATNRPNSIDPALRRFGRFDREIDIG 416
              S  I +  TN    +D AL R GR D  + +G
Sbjct: 351 CCGSEKIFVFTTNHIEKLDSALMRSGRMDMHVHMG 385


>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 473

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 20/157 (12%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IG    RG L+YGPPGTGK+ +  A+AN      + I   E+    A ++ S LRK    
Sbjct: 231 IGKAWKRGYLLYGPPGTGKSTMIAAMAN---LLNYSIYDLEL---TAIQNNSELRKILTA 284

Query: 183 ADKNSPAIIFIDELDA---IAPKREKTH---------GEVERR------IVSQLLTLMDG 308
               S  II I+++D    +  KR+K           G+ +         +S LL  +DG
Sbjct: 285 TSNKS--IIVIEDIDCSLDLTGKRKKKESNLMIWRKDGDQDNEENKSFVTLSGLLNFIDG 342

Query: 309 MKKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
           +  +     I++  TN    +DPAL R GR D  I++
Sbjct: 343 IWSACGQERIIVFTTNHLAKLDPALIRRGRMDMHIEL 379


>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 530

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G    RG L++GPPGTGK+ +  A+AN      FL      +     +  S L+K    
Sbjct: 238 VGKPWKRGYLLFGPPGTGKSTMIAAIAN------FLDYDVYDLELTTVKDNSELKKLL-- 289

Query: 183 ADKNSPAIIFIDELDA---IAPKR-------------EKTHGEVERRI--------VSQL 290
            D  S +II I+++D    +  +R             EK  GE + ++        +S L
Sbjct: 290 LDTTSKSIIVIEDIDCSLDLTGQRKKKKEEDEEEDGEEKKEGEKKPKVDDKQSKVTLSGL 349

Query: 291 LTLMDGMKK--SSHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
           L  +DG+    S   I++  TN  + +DPAL R GR D  I++
Sbjct: 350 LNSIDGLWSACSGEKIIVFTTNFVDKLDPALIRRGRMDNHIEM 392


>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 478

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
           RG L++GPPGTGK+ +  A+AN      FL      +     +  + L+K     D    
Sbjct: 229 RGYLLFGPPGTGKSTMISAIAN------FLEYDVYDLELTTVKDNAELKKLM--LDTKGK 280

Query: 201 AIIFIDELDAI--------------APKREKTHGEVERRI---------VSQLLTLMDGM 311
           +I+ I+++D                  K EK   E  +R+         +S LL  +DG+
Sbjct: 281 SIVVIEDIDCSLELTEHRKKKKEEDEDKEEKKEAENLKRVSGNNESNVTLSGLLNAIDGL 340

Query: 312 KK--SSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDD 485
               S   I++  TN  +++DPAL R GR D  I++    +  R E  ++  KN    + 
Sbjct: 341 WSACSDEKIIIFTTNFVDNLDPALIRRGRMDYHIEM----SYCRFEAFKVLAKNYLENES 396

Query: 486 VDL 494
            DL
Sbjct: 397 HDL 399


>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
           subunit ClpX1 (CLPX) identical to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]
          Length = 579

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
 Frame = +3

Query: 27  ILMYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEADKNSP 200
           IL+ GP G+GKTL+A+ +A      F + +   +  +   GE  ES L K    AD N  
Sbjct: 226 ILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVA 285

Query: 201 A----IIFIDELDAIAPKREKTH--GEVERRIVSQ-LLTLMDG 308
           A    I++IDE+D I  K E  +   +V    V Q LL +++G
Sbjct: 286 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 328


>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 451

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IG    RG L+YGPPGTGK+ +  A+AN      + I   E+ S   G +    +     
Sbjct: 231 IGKAWKRGYLLYGPPGTGKSTMIAAMAN---LMKYNIYDLELTS--IGNNWELKKLLIAT 285

Query: 183 ADKNSPAIIFID-ELDAIAPKREK-THGEVERR-----IVSQLLTLMDGMKKS--SHVIV 335
            +K+   I  ID  LD    +  K   G+ E +      +S LL  +DG+  +     I+
Sbjct: 286 TNKSIIVIEDIDCSLDLTGEREVKDLKGDKEGKKSNAVTLSGLLNFIDGIWSACGQERIL 345

Query: 336 MAATNRPNSIDPALRRFGRFDREIDI 413
           +  TN    +D AL R GR D  I++
Sbjct: 346 VFTTNHVGKLDQALIRRGRMDMHIEL 371


>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 510

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVAN--ETGAFFFLING-------PEIMSKLAGES- 152
           +G    RG L++GPPGTGK+ +  A+AN  E   +   +          ++M    G+S 
Sbjct: 234 VGKPWKRGYLLFGPPGTGKSTMISAMANFLEYDVYDLELTTVKDNSELKKLMLDTKGKSI 293

Query: 153 ------ESNL-----RKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLT 296
                 + +L     RK  +E D++        E + +  KRE+  GE E ++ +S LL 
Sbjct: 294 VVIEDIDCSLDLTGQRKKKKEEDEDEEEEEKKKEAEKLL-KRER--GERESKVTLSGLLN 350

Query: 297 LMDGMKK--SSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 467
            +DG+    S   I++  TN  + +DPAL R GR D  I++    +  R E  ++  KN
Sbjct: 351 AIDGLWSACSGEKIIVFTTNYLDKLDPALIRRGRMDNHIEM----SYCRFEAFKVLAKN 405


>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
           subunit ClpX, putative similar to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]
          Length = 656

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
 Frame = +3

Query: 27  ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESNLRKAFEEADKNSP 200
           +L+ GP G+GKTL+A+ +A      F + +   +     +  + ES L K    A+ N  
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVAEFNVQ 370

Query: 201 A----IIFIDELDAIAPKREKTH--GEVERRIVSQ-LLTLMDG 308
           A    I++IDE+D I  K E  +   +V    V Q LL L++G
Sbjct: 371 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEG 413


>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 514

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 19/156 (12%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVAN--ETGAF---FFLINGPEIMSKLAGESESNLR 167
           IG    RG L++GPPGTGK+ +  A+AN  E   +      +     + +L  E+     
Sbjct: 238 IGKAWKRGYLLFGPPGTGKSTMIAAMANLLEYDVYDLELTTVKDNTELRRLLIETSGKSI 297

Query: 168 KAFEEAD----------KNSPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGM 311
              E+ D          +        DE   I  + +K  GE +  +  +S LL  +DG+
Sbjct: 298 IVIEDIDCSLDLTGQRKQKKDEEEDEDETSPIEKQMKKDQGENKGSKVTLSGLLNFIDGL 357

Query: 312 KKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
             +     I++  TN  + +DPAL R GR D+ I++
Sbjct: 358 WSACGGERIIVFTTNFIDKLDPALIRKGRMDKHIEM 393


>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 506

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
           RG L+YGPPGTGK+ +  A+AN      + +   E+      +S S LRK   +   +S 
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLRYDIYDLELTEV------KSNSELRKLLMKT--SSK 289

Query: 201 AIIFIDELDAI-----APKREKTH-----------------GEVERRIVSQLLTLMDGMK 314
           +II I+++D         K++ T                  G+     +S LL   DG+ 
Sbjct: 290 SIIVIEDIDCSINLTNRNKKQSTGSYNEPEMLTGSGLGDDLGDGNTITLSGLLNFTDGLW 349

Query: 315 K--SSHVIVMAATNRPNSIDPALRRFGRFDREI 407
               S  I +  TN    +DPAL R GR D  I
Sbjct: 350 SCCGSERIFVFTTNHIEKLDPALLRSGRMDMHI 382


>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 520

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/69 (37%), Positives = 39/69 (56%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
           RG L+YGPPGTGK+ +  A+AN  G   + +   E+       S S LRK   +   +S 
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HSNSELRKLLMKT--SSK 289

Query: 201 AIIFIDELD 227
           +II I+++D
Sbjct: 290 SIIVIEDID 298


>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 500

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           IG    RG L++GPPGTGK+ +  A+AN      FL      +     +  ++LR+   E
Sbjct: 235 IGKAWKRGYLLFGPPGTGKSTMIAAMAN------FLEYDVYDLELTTVKDNTHLRRLLIE 288

Query: 183 ADKNSPAIIFIDELDA---IAPKREKTHGE---------VERRI--------------VS 284
               S  II I+++D    +  +R+K   E         +E+++              +S
Sbjct: 289 TSAKS--IIVIEDIDCSLNLTGQRKKKEEEEEDGDDKNTIEKKMMMKNEGENKESKVTLS 346

Query: 285 QLLTLMDGMKKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
            LL  +DG+  +     I++  TN  + +DPAL R GR D+ I++
Sbjct: 347 GLLNFIDGLWSACGGERIIVFTTNFVDKLDPALIRKGRMDKHIEM 391


>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 392

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           +G    R   +YGPPGTGK+ +  A+AN      + +     ++ + G+++  LR     
Sbjct: 215 VGKAWKRSYFLYGPPGTGKSSLVAAMANYLKFDIYDLQ----LANVQGDAQ--LRSLL-- 266

Query: 183 ADKNSPAIIFIDELDAIA--PKR----EKTHGEVERR---IVSQLLTLMDGMKKS--SHV 329
              N+ +I+ ++++D     P R      T G  +      +S LL  +DG+  S     
Sbjct: 267 LATNNSSILLVEDIDCSVDLPTRLQPATTTLGAPKGSTPLTLSGLLNCIDGLWSSCGDER 326

Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIG 416
           IV+  TN    +DPAL R G  D  I +G
Sbjct: 327 IVIFTTNNKEVLDPALLRPGCMDMHIYLG 355


>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
           repeat family protein contains Pfam profiles: PF00023
           ankyrin repeat, PF00004 ATPase family associated with
           various cellular activities (AAA)
          Length = 481

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFL-------INGPEIMSKLAGESESN 161
           IG + P  +   G PGTGKT++AR +         L       +   +++ +  G +   
Sbjct: 240 IGTRRPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPK 299

Query: 162 LRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMA 341
            R+  +EA+     I+F+DE   + P ++    +     + +++++MD  K    V++ A
Sbjct: 300 TRRKIQEAE---GGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGK---IVVIFA 353

Query: 342 ATNRP 356
             + P
Sbjct: 354 GYSEP 358


>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
           subunit ClpX, putative similar to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]; non-consensus splice donor GC at exon 4;
           non-consensus splice donor AA at exon 7
          Length = 606

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
 Frame = +3

Query: 27  ILMYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFE----EAD 188
           +L+ GP G+GKTL+A+ +A      F + +   +  +   GE  ES L K +       +
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVVSGCNVE 324

Query: 189 KNSPAIIFIDELDAIAPKREKTHG--EVERRIVSQ-LLTLMDG 308
           +    I++IDE+D +  K   ++G  +V    V Q LL L++G
Sbjct: 325 EAQRGIVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEG 367


>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
           protein-related similar to TATA box-binding
           protein-interacting protein SP:O35753 from [ Mus
           musculus]
          Length = 458

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAFEEA 185
           + +L+ GPPGTGKT +A  ++ E G+   F  + G E+ S    ++E    N R+A    
Sbjct: 67  KALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLR 126

Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329
            K +   ++  E+  ++P+  ++      + +S ++  +  +K + H+
Sbjct: 127 IKETKE-VYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHL 173


>At5g67630.1 68418.m08527 DNA helicase, putative similar to
           RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
           reptin [Drosophila melanogaster] GI:7243682
          Length = 469

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA 185
           R IL+ G PGTGKT IA  +A   G    F +I G EI S    ++E+ L ++F +A
Sbjct: 67  RAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEA-LTQSFRKA 122


>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
           helicase GI:4521249 from [Mus musculus]
          Length = 473

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA 185
           R IL+ G PGTGK  IA  +A   G    F +I G EI S    ++E+ L +AF +A
Sbjct: 67  RAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEA-LTQAFRKA 122


>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 341

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVAN 86
           +G    RG L+YGPPGTGK+ +  A+AN
Sbjct: 248 VGKAWKRGYLLYGPPGTGKSSLVAAMAN 275


>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
           subunit / ClpC almost identical to ClpC GI:2921158 from
           [Arabidopsis thaliana]; contains Pfam profile PF02861:
           Clp amino terminal domain; contains Pfam profile
           PF00004: ATPase, AAA family; contains Pfam profile
           PF02151: UvrB/uvrC motif
          Length = 929

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAG 146
           +G +      + G PG GKT IA  +A    +G     I G ++++          K  G
Sbjct: 290 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRG 349

Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAI 233
           E E  L+K  EE  ++   I+FIDE+  +
Sbjct: 350 EFEERLKKLMEEIRQSDEIILFIDEVHTL 378


>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 491

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 35/137 (25%), Positives = 60/137 (43%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
           R  L+YGP GTGK+    A+AN      + I+    +SK+  +S+  +            
Sbjct: 232 RSYLLYGPSGTGKSSFVAAMANFLDYDVYDID----LSKVVDDSDLKMLL----LQTRGK 283

Query: 201 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALR 380
           ++I I++LD       K+       I++   +++        ++V   T +   IDPA+ 
Sbjct: 284 SVIVIEDLD--RHLSTKSTAVNLSGILNFTDSILSSCTADERIMVFTMTGK-EQIDPAML 340

Query: 381 RFGRFDREIDIGIPDAT 431
           R GR D  I   + D T
Sbjct: 341 RPGRVDVHIHFPLCDFT 357


>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
           (CPK9) identical to calmodulin-domain protein kinase
           CDPK isoform 9 [Arabidopsis thaliana]
           gi|1399265|gb|AAB03242
          Length = 541

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +3

Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326
           ES  NL KAF+  DK+S   I IDEL++   +         + ++S + +  DG      
Sbjct: 464 ESNENLYKAFQHFDKDSSGYITIDELESALKEYGMGDDATIKEVLSDVDSDNDGRINYEE 523

Query: 327 VIVMAATNRPNSIDPAL 377
              M  +  P    P L
Sbjct: 524 FCAMMRSGNPQQQQPRL 540


>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
           subunit (ClpC) identical to AtClpC GI:5360574 from
           [Arabidopsis thaliana]; contains Pfam profiles  PF02861:
            Clp amino terminal domain and PF02151:  UvrB/uvrC motif
          Length = 952

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
 Frame = +3

Query: 33  MYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAF 176
           + G PG GKT IA  +A    +G     I G  +++          K  GE E  L+K  
Sbjct: 321 LIGEPGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLM 380

Query: 177 EEADKNSPAIIFIDELDAI 233
           EE  ++   I+FIDE+  +
Sbjct: 381 EEIRQSDEIILFIDEVHTL 399


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q12019)
           [Saccharomyces cerevisiae]; similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
           sapiens]; contains Prosite PS00017: ATP/GTP-binding site
           motif A (P-loop)
          Length = 5336

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETG 95
           + V   R +L+YGP G+GK+ + R +A+E+G
Sbjct: 348 LAVSQKRPVLLYGPSGSGKSALIRKLADESG 378


>At2g41860.2 68415.m05174 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calmodulin-domain protein
           kinase CDPK isoform 7 [Arabidopsis thaliana]
           gi|1399277|gb|AAB03247
          Length = 530

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 150 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDG 308
           ++ +L+KAF   DKN    I I+EL DA+A   + T  EV   I+  + T  DG
Sbjct: 428 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAIILDVDTNKDG 481


>At2g41860.1 68415.m05173 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calmodulin-domain protein
           kinase CDPK isoform 7 [Arabidopsis thaliana]
           gi|1399277|gb|AAB03247
          Length = 425

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 150 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDG 308
           ++ +L+KAF   DKN    I I+EL DA+A   + T  EV   I+  + T  DG
Sbjct: 323 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAIILDVDTNKDG 376


>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
          Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
          (Replication factor C 37 kDa subunit, A1 37 kDa
          subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens];
          contains Pfam domain, PF00004: ATPase, AAA family
          Length = 327

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 27 ILMYGPPGTGKTLIARAVANE 89
          +L YGPPGTGKT  A A+A++
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQ 53


>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
           Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
           (Replication factor C 37 kDa subunit, A1 37 kDa subunit,
           RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 339

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 27  ILMYGPPGTGKTLIARAVANE 89
           +L YGPPGTGKT  A A+A++
Sbjct: 45  MLFYGPPGTGKTTTALAIAHQ 65


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 6   GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
           G  PP  +++ GPPG GK+L+ +++  E    F   N PE+   +        R  F E 
Sbjct: 79  GEAPPFVVVVQGPPGVGKSLVIKSLVKE----FTKQNVPEVRGPITIVQGKQRRFQFVEC 134

Query: 186 DKNSPAII 209
             +  A++
Sbjct: 135 PNDINAMV 142


>At4g21880.1 68417.m03164 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 845

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
 Frame = +3

Query: 288 LLTLMDGMKKSSHVIVMAATNRPNS-IDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 464
           L  L DG++  S++I   AT  PNS ++ A+ +F +   E+DI +P +T    ++     
Sbjct: 285 LSILQDGVETVSNLIFSYATCIPNSTVEDAIFKFNKLHEELDI-VPSSTSYENLVSYLCG 343

Query: 465 NMKLGDDVDLXQIAAESHGHVGADLASLCSEAALQQIRE 581
           + ++   +D+ +   E+   + A++     + A++QI E
Sbjct: 344 SNEVVTALDIVENMCEAGLVISANILHSLLQ-AIEQILE 381


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
           to pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1406

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANET 92
           +KP R  L+ GPPG+GK+ + +A++ +T
Sbjct: 169 IKPGRLTLLLGPPGSGKSTLLKALSGKT 196


>At2g39730.3 68415.m04879 ribulose bisphosphate
           carboxylase/oxygenase activase / RuBisCO activase
           identical to SWISS-PROT:P10896 ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase, RA)[Arabidopsis thaliana]
          Length = 441

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 185
           +K P  + ++G  G GK+     V  + G    +++  E+ S  AGE    +R+ + EA 
Sbjct: 155 IKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214

Query: 186 ---DKNSPAIIFIDELDA 230
               K     +FI++LDA
Sbjct: 215 DLIKKGKMCCLFINDLDA 232


>At2g39730.2 68415.m04878 ribulose bisphosphate
           carboxylase/oxygenase activase / RuBisCO activase
           identical to SWISS-PROT:P10896 ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase, RA)[Arabidopsis thaliana]
          Length = 446

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 185
           +K P  + ++G  G GK+     V  + G    +++  E+ S  AGE    +R+ + EA 
Sbjct: 155 IKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214

Query: 186 ---DKNSPAIIFIDELDA 230
               K     +FI++LDA
Sbjct: 215 DLIKKGKMCCLFINDLDA 232


>At2g39730.1 68415.m04877 ribulose bisphosphate
           carboxylase/oxygenase activase / RuBisCO activase
           identical to SWISS-PROT:P10896 ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase, RA)[Arabidopsis thaliana]
          Length = 474

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 185
           +K P  + ++G  G GK+     V  + G    +++  E+ S  AGE    +R+ + EA 
Sbjct: 155 IKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214

Query: 186 ---DKNSPAIIFIDELDA 230
               K     +FI++LDA
Sbjct: 215 DLIKKGKMCCLFINDLDA 232


>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
           Werner helicase interacting protein [Homo sapiens]
           GI:14349166; contains Pfam profiles PF00004: ATPase
           family associated with various cellular activities
           (AAA), PF00627: UBA/TS-N domain; contains
           ATP/GTP-binding site motif A (P-loop)
          Length = 525

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 27  ILMYGPPGTGKTLIARAVANET 92
           I+ +GPPGTGKT IA+++ N +
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSS 161


>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1189

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFL 110
           R I ++GPPG GKT IAR V N+    F L
Sbjct: 258 RIIGIWGPPGIGKTTIARVVYNQLSHSFQL 287


>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 924

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
 Frame = +3

Query: 6   GVKPPRGILMYGPPGTGKTLIARAVAN--ETGAFFFLINGPEIMSKLAGESES------- 158
           G    + I + GPPG GKT I R++A   +   F F + G   ++++ G  ++       
Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHCQTYVGAMPG 495

Query: 159 NLRKAFEEADKNSPAIIFIDELDAI 233
            + +  +     +P I+F DE+D +
Sbjct: 496 KMVQCLKSVGTANPLILF-DEIDKL 519


>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
           similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
           (Replication factor C 36 kDa subunit, A1 36 kDa subunit,
           RF-C 36 kDa subunit, RFC36) [Homo sapiens]
          Length = 369

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 27  ILMYGPPGTGKTLIARAVANE 89
           +L+YGPPGTGKT    AVA +
Sbjct: 75  LLLYGPPGTGKTSTILAVARK 95


>At1g66950.1 68414.m07612 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1454

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANE 89
           VKP R  L+ GPP +GKT + +A+A +
Sbjct: 198 VKPSRMTLLLGPPSSGKTTLLQALAGK 224


>At4g27420.1 68417.m03941 ABC transporter family protein
           D.melanogaster P element CaSpeR-1 gene (white
           protein),PID:g870996
          Length = 639

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 31/107 (28%), Positives = 44/107 (41%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
           VKP   + M GP G+GKT +  A+    G         E   KL G    N  K   +A 
Sbjct: 75  VKPGEILAMLGPSGSGKTSLLTALGGRVG---------EGKGKLTGNISYN-NKPLSKAV 124

Query: 189 KNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329
           K +    F+ + DA+ P    T    E  + + LL L +  KK   +
Sbjct: 125 KRTTG--FVTQDDALYPNLTVT----ETLVFTALLRLPNSFKKQEKI 165


>At2g36380.1 68415.m04464 ABC transporter family protein related to
           multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANE 89
           +KP R  L+ GPP +GKT + +A+A +
Sbjct: 196 IKPSRMTLLLGPPSSGKTTLLQALAGK 222


>At1g73110.1 68414.m08453 ribulose bisphosphate
           carboxylase/oxygenase activase, putative / RuBisCO
           activase, putative similar to ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase, RA) [Oryza sativa] SWISS-PROT:P93431
          Length = 432

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
           + +K P  + ++G  G GKT     +    G    +++  E+ S  AGE    +R  +  
Sbjct: 159 LNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRT 218

Query: 183 A-----DKNSPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLTLMDGMKKSS 323
           A     ++   +++ I+++DA   +  +T   V  +I V  L+ L D   + S
Sbjct: 219 ASQVIQNQGKMSVLMINDIDAGLGRFGETQMTVNNQIVVGTLMNLADNPTRVS 271


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1234

 Score = 27.5 bits (58), Expect(2) = 0.76
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVAN 86
           R + ++GP G GKT IARA+ N
Sbjct: 203 RMVGIWGPTGIGKTTIARALFN 224



 Score = 22.2 bits (45), Expect(2) = 0.76
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 123 EIMSKLAGES--ESNLRKAFEEADKNSPAIIFIDELD 227
           +++SKL  +   E N   A +E  +    +IFID+LD
Sbjct: 265 KLLSKLLDKKNLEINHLDAVKERLRQMKVLIFIDDLD 301


>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   GVKPPRGILMYGPPGTGKTLIARAVANETGAFFF 107
           G    + I + GPPG GKT I R++A      FF
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKFF 486


>At4g15230.1 68417.m02333 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1326

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANE 89
           V+P R  L+ GPPG GKT + +A++ +
Sbjct: 164 VRPGRMTLLLGPPGCGKTTLLQALSGK 190


>At3g49210.1 68416.m05378 expressed protein
          Length = 518

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 469 MFLVCMRRISRRPVASGMPMSISRSNRPKRRSAGSMEFGRFVAAITITW 323
           + L CMR+ S       +P     S+R  R  AGS    RF+  + + W
Sbjct: 174 LVLACMRKTSNPDELPSLPNQNRSSSRSSRLMAGSRGDSRFLWLVMVIW 222


>At2g29940.1 68415.m03642 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1426

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANE 89
           +KP R  L+ GPPG+GK+ +  A+A +
Sbjct: 183 IKPGRMTLLLGPPGSGKSTLLLALAGK 209


>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
           gb|Z70524 GI:1514643 PDR5-like ABC transporter from
           Spirodela polyrrhiza and is a member of the PF|00005 ABC
           transporter family. ESTs gb|N97039 and gb|T43169 come
           from this gene
          Length = 1442

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANE 89
           VKP R  L+ GPP +GKT +  A+A +
Sbjct: 192 VKPSRMTLLLGPPSSGKTTLLLALAGK 218


>At4g15215.1 68417.m02332 ABC transporter family protein similar to
           PDR5-like ABC transporter [Spirodela polyrhiza]
           GI:1514643; contains Pfam profile PF00005: ABC
           transporter
          Length = 1390

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVA 83
           V+P R  L+ GPPG GKT + +A++
Sbjct: 161 VRPGRMTLLLGPPGCGKTTLLQALS 185


>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
           (TIR-NBS-LRR class), putative domain signature
           TIR-NBS-LRR exists, suggestive of a disease resistance
           protein., closest Col-0 homolog to RPP1-WsB
          Length = 1240

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFL 110
           R I ++GPPG GKT IAR + N+    F L
Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQVSDRFQL 319


>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
           (TIR-NBS-LRR class), putative domain signature
           TIR-NBS-LRR exists, suggestive of a disease resistance
           protein., closest Col-0 homolog to RPP1-WsB
          Length = 1214

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFL 110
           R I ++GPPG GKT IAR + N+    F L
Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQVSDRFQL 319


>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
           (TIR-NBS-LRR class), putative domain signature
           TIR-NBS-LRR exists, suggestive of a disease resistance
           protein., closest Col-0 homolog to RPP1-WsB
          Length = 1214

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFL 110
           R I ++GPPG GKT IAR + N+    F L
Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQVSDRFQL 319


>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1194

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFL 110
           R I ++GPPG GKT IAR + N+    F L
Sbjct: 294 RMIGIWGPPGIGKTTIARFLFNQVSDRFQL 323


>At3g16340.1 68416.m02066 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1416

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANE 89
           +KP R  L+ GPP +GKT +  A+A +
Sbjct: 170 IKPSRMTLLLGPPSSGKTTLLLALAGK 196


>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 896

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 33  MYGPPGTGKTLIARAVANE 89
           ++GPPG GKT IAR++ N+
Sbjct: 263 IWGPPGVGKTTIARSLYNQ 281


>At2g26910.1 68415.m03228 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1420

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANETG 95
           ++P R  L+ GPP +GKT +  A+A   G
Sbjct: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186


>At1g73170.1 68414.m08466 expressed protein
          Length = 666

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANETG 95
           V+    +L+ GPPG GKT + R VA   G
Sbjct: 194 VQDGNSLLLIGPPGVGKTTMIREVARMLG 222


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1423

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANE 89
           VKP R  L+ GPP +GKT +  A+A +
Sbjct: 177 VKPGRMALLLGPPSSGKTTLLLALAGK 203


>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
           domain-containing protein contains Pfam profiles:
           PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
           family associated with various cellular activities (AAA)
          Length = 956

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS 197
           + +L+ G PG GKT  A+ V+   G     +N     S   G++ SN+ K    ++ NS
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNA----SDSRGKANSNIAKGIGGSNANS 448


>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1193

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFL 110
           R I + GPPG GKT IARA+ ++    F L
Sbjct: 215 RMIGIVGPPGIGKTTIARALRDQISENFQL 244


>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1215

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFL 110
           R I ++GPPG GKT I R + N+  + F L
Sbjct: 252 RMIGIWGPPGIGKTTIVRFLYNQLSSSFEL 281


>At1g59870.1 68414.m06745 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1469

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVANE 89
           +KP R  L+ GPP +GKT +  A+A +
Sbjct: 194 IKPGRMTLLLGPPSSGKTTLLLALAGK 220


>At5g12180.1 68418.m01429 calcium-dependent protein kinase, putative
           / CDPK, putative
          Length = 528

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +3

Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326
           + E +L  AF+  DK++   I ++EL+    +     G   + I+S++    DG      
Sbjct: 446 DREEHLYSAFQHFDKDNSGYITMEELEQALREFGMNDGRDIKEIISEVDGDNDGRINYDE 505

Query: 327 VIVMAATNRPNSIDPALRR 383
            + M     P+ I P  RR
Sbjct: 506 FVAMMRKGNPDPI-PKKRR 523


>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1981

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVANETGAFFFL 110
           R I ++GPPG GKT IAR + ++    F L
Sbjct: 224 RMIGIWGPPGIGKTTIARFLLSQVSKSFQL 253


>At3g22980.1 68416.m02898 elongation factor Tu family protein
           similar to eukaryotic translation elongation factor 2
           GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 108 LINGPEIMSKLAGESESNLRKAFEEADKNS--PAIIFIDELDAIAPKREKTHGEVERRI 278
           +I G ++ S +  E+E  +RK+ E  D +S  P ++F+ ++ AI  K     G    R+
Sbjct: 367 IIGGDDVDSSVLAEAEL-VRKSIEACDSSSDSPCVVFVSKMFAIPMKMIPQDGNHRERM 424


>At1g66400.1 68414.m07541 calmodulin-related protein, putative
           similar to calmodulin-related protein 2, touch-induced
           from SP:P25070 [Arabidopsis thaliana]; contains Pfam
           profile: PF00036 EF hand (4 copies)
          Length = 157

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
 Frame = +3

Query: 150 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326
           S  +++K F+  DKN+   I IDEL D I         E  + ++ +     +G      
Sbjct: 12  SMEDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDE 71

Query: 327 VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGD 482
            + +   +  +S + A+R         D+   D  GR+    +H+    LG+
Sbjct: 72  FVALFQISDQSSNNSAIR---DLKEAFDLYDLDRNGRISANELHSVMKNLGE 120


>At1g61950.1 68414.m06988 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase GI:3283996 from [Nicotiana tabacum]; contains
           protein kinase domain, Pfam:PF00069; contains EF hand
           domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 551

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/84 (25%), Positives = 37/84 (44%)
 Frame = +3

Query: 57  KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIA 236
           K L+  A  +  G   ++      M++   E E NL KAF+  DK++   I   EL+   
Sbjct: 442 KQLLEDADVDGNGTIDYIEFISATMNRFRVEREDNLFKAFQHFDKDNSGFISRQELETAM 501

Query: 237 PKREKTHGEVERRIVSQLLTLMDG 308
            +       + + I+S++    DG
Sbjct: 502 KEYNMGDDIMIKEIISEVDADNDG 525


>At1g50700.1 68414.m05701 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calmodulin-domain protein
           kinase CDPK isoform 9 [Arabidopsis thaliana]
           gi|1399265|gb|AAB03242
          Length = 521

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +3

Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326
           ES  N+ KAF+  DK+    I  DEL+A   +         + I+S +    DG      
Sbjct: 446 ESNENVYKAFQHFDKDGSGYITTDELEAALKEYGMGDDATIKEILSDVDADNDGRINYDE 505

Query: 327 VIVMAATNRP 356
              M  +  P
Sbjct: 506 FCAMMRSGNP 515


>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 954

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 27  ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE-SNLRKAFEEADKNSPA 203
           +L+ G PG GKT +A   A   G     IN  +  S  A E+   ++ +       + P 
Sbjct: 348 LLLCGAPGLGKTTLAHIAAKHCGYRVVEINASDERSASAIETRILDVVQMNSVTADSRPK 407

Query: 204 IIFIDELD 227
            + IDE+D
Sbjct: 408 CLVIDEID 415


>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 33  MYGPPGTGKTLIARAVANETGAFFFL 110
           +YGP G GKT IARA+ +   + F L
Sbjct: 215 IYGPAGIGKTTIARALHSRLSSSFQL 240


>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
           subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
           protein GI:497629, SP:P42762 from [Arabidopsis
           thaliana]; contains Pfam profile PF02861: Clp amino
           terminal domain
          Length = 945

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
 Frame = +3

Query: 30  LMYGPPGTGKTLIARAVA---NETGAFFFLINGPEIMS----------KLAGESESNLRK 170
           ++ G  G GKT IA  +A    E  A  FL+    IMS          K  GE E+ +  
Sbjct: 313 ILLGEAGVGKTAIAEGLAISIAEASAPGFLLT-KRIMSLDIGLLMAGAKERGELEARVTA 371

Query: 171 AFEEADKNSPAIIFIDELDAI 233
              E  K+   I+FIDE+  +
Sbjct: 372 LISEVKKSGKVILFIDEVHTL 392


>At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
           Non-consensus TT donor splice site at exon 1
          Length = 1104

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 33  MYGPPGTGKTLIARAVANETGAFFFL 110
           ++GP G GKT IARA+ N+    F L
Sbjct: 211 IWGPAGIGKTTIARALFNQLSTGFRL 236


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1388

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVA 83
           ++P R  L+ GPPG GKT +  A++
Sbjct: 159 IRPKRMTLLLGPPGCGKTTLLLALS 183


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
 Frame = +3

Query: 33  MYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
           ++GP G GKT IARA+ N+    F    F+ N  E   + AG  +  L+   ++      
Sbjct: 210 IWGPAGVGKTTIARALYNQYHENFNLSIFMENVRESYGE-AGLDDYGLKLHLQQR----- 263

Query: 201 AIIFIDELDAIAPKREKTHGEVERRIVSQ-LLTLMDGMKKSSHVIVMAATNR 353
              F+ +L      R +  G +E R+ SQ +L ++D +     +  +A  N+
Sbjct: 264 ---FLSKLLDQKDLRVRHLGAIEERLKSQKVLIILDDVDNIEQLKALAKENQ 312


>At2g37280.1 68415.m04573 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1413

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVA 83
           + P R  L+ GPPG GKT + +A++
Sbjct: 162 ISPGRLTLLLGPPGCGKTTLLKALS 186


>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1038

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 33  MYGPPGTGKTLIARAVANETGAFF 104
           ++GP G GKT IARA+ N+    F
Sbjct: 210 IWGPAGIGKTTIARALYNQLSTNF 233


>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLAGES 152
           IG    R I++YG  G GKT +A+   NE    F    FL N  E   K  G +
Sbjct: 204 IGSDGVRVIVIYGMGGIGKTTLAKVAFNEFSHLFEGSSFLENFREYSKKPEGRT 257


>At4g26090.1 68417.m03756 disease resistance protein RPS2
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           identical to RPS2 (gi:13661831)
          Length = 909

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 21  RGIL-MYGPPGTGKTLIARAVANE 89
           RGI+ +YGP G GKT + +++ NE
Sbjct: 175 RGIIGVYGPGGVGKTTLMQSINNE 198


>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 818

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +3

Query: 3   IGVKPPRGILMYGPPGTGKT----LIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 170
           +G+     +L+ GPPGTGKT     I  A+ + T A    +       ++    +  +++
Sbjct: 268 VGLSRKSFVLIQGPPGTGKTQTILSILGAIMHATPA---RVQSKGTDHEVKRGIQMTIQE 324

Query: 171 AFEEADKNSPAIIFIDELDAIAPK 242
            +    + SP I+ ++  DAI P+
Sbjct: 325 KYNHWGRASPWILGVNPRDAIMPE 348


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVA 83
           +KP R  L+ GPP  GKT + +A++
Sbjct: 197 IKPGRLTLLLGPPSCGKTTLLKALS 221


>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 942

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
 Frame = +3

Query: 6   GVKPPRGILMYGPPGTGKTLIARAVAN--ETGAFFFLINGPEIMSKLAGESES------- 158
           G    + I + GP G GKT I R++A   +   F F + G   ++++ G   +       
Sbjct: 445 GTSQGKIICLSGPTGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHRRTYIGAMPG 504

Query: 159 NLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 305
            + +  +     +P ++ IDE+D +  +    HG+      S +L L+D
Sbjct: 505 KMVQCLKNVGTENP-LVLIDEIDKLGVRGH--HGDP----ASAMLELLD 546


>At2g34440.1 68415.m04225 MADS-box family protein similar to
           SP|Q9XGJ4 MADS box protein GGM13 {Gnetum gnemon};
           contains Pfam profile PF00319: SRF-type transcription
           factor (DNA-binding and dimerisation domain)
          Length = 172

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 108 LINGPEIMSKLAGE-SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI 278
           L+N      K  GE S+  L  A +E  K S   + +DEL+    + +  HG +E ++
Sbjct: 100 LLNQEVEAEKERGEKSQEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQV 157


>At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1068

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 33  MYGPPGTGKTLIARAVANETGAFF 104
           ++GP G GKT IAR + N+  + F
Sbjct: 212 IWGPAGIGKTTIARTLFNKISSIF 235


>At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1068

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 33  MYGPPGTGKTLIARAVANETGAFF 104
           ++GP G GKT IAR + N+  + F
Sbjct: 212 IWGPAGIGKTTIARTLFNKISSIF 235


>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1085

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 33  MYGPPGTGKTLIARAVANETGAFFFL 110
           ++GP G GK+ IARA+ N+  + F L
Sbjct: 212 IWGPAGIGKSTIARALYNQLSSSFQL 237


>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 464

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLI 68
           V P +G+ +YG  GTGKT++
Sbjct: 130 VSPVKGLYLYGGVGTGKTML 149


>At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +3

Query: 39  GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFID 218
           GP G GK+ IARA+ N   + F L      M  L   S+SN   + E + K S     + 
Sbjct: 227 GPAGIGKSTIARALHNLLSSSFHL---SCFMENLI--SQSNPHSSLEYSSKLSLQEQLLS 281

Query: 219 ELDAIAPKREKTHGEVERRIVSQ-LLTLMDGMKKSSHVIVMA 341
           ++      R +  G ++ R+  Q +L ++D +     + V+A
Sbjct: 282 QVLNEKDIRIRHLGAIQERLHDQRVLIILDDVTSLEQLEVLA 323


>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
           similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
           (Replication factor C 40 kDa subunit, A1 40 kDa subunit,
           RF-C 40 kDa subunit, RFC40) [Mus musculus]
          Length = 333

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 27  ILMYGPPGTGKTLIARAVANE 89
           +++ GPPGTGKT    A+A+E
Sbjct: 51  LILSGPPGTGKTTSILALAHE 71


>At1g05990.1 68414.m00627 calcium-binding protein, putative strong
           similarity to calcium-binding protein [Lotus japonicus]
           GI:18413495; contains INTERPRO:IPR002048 calcium-binding
           EF-hand domain
          Length = 150

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAI 233
           E E ++++AF   D+N    I +DEL A+
Sbjct: 75  EEEEDMKEAFNVFDQNGDGFITVDELKAV 103


>At5g51430.1 68418.m06376 conserved oligomeric Golgi complex
           component-related / COG complex component-related
           contains weak similarity to Conserved oligomeric Golgi
           complex component 7 (Swiss-Prot:P83436) [Homo sapiens]
          Length = 836

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 498 QIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDARGS 632
           QIA+E    +GA L      A L+  R   D++ L DD +  RGS
Sbjct: 44  QIASEE---IGASLEEQSGGALLRVPRATRDVLRLRDDAVSLRGS 85


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
           resistance protein-related low similarity to disease
           resistance protein RPP4 [Arabidopsis thaliana]
           GI:20270890; contains Pfam profiles PF00412: LIM domain,
           PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 21  RGILMYGPPGTGKTLIARAVAN 86
           R I ++G PG GKT +A+AV N
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFN 211


>At5g07800.1 68418.m00894 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase 2 (FMO2) from Homo
           sapiens [GI:1834493]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like
          Length = 460

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 719 FPPTVSRNADXDDFVIAYRKLSMETARELRTSGVNLIVLEVNE 591
           F    SR+      VI      + +ARELR  G  ++VLE NE
Sbjct: 4   FTSEASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNE 46


>At3g57530.1 68416.m06406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calmodulin-domain protein
           kinase CDPK isoform 7 [Arabidopsis thaliana]
           gi|1399277|gb|AAB03247
          Length = 538

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +3

Query: 150 SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329
           ++ +L+KAF   D+N+   I I+EL         T  EV   I+  + T  DG       
Sbjct: 437 NDEHLKKAFAFFDQNNNGYIEIEELREALSDELGTSEEVVDAIIRDVDTDKDGRISYEEF 496

Query: 330 IVMAAT 347
           + M  T
Sbjct: 497 VTMMKT 502


>At3g25620.1 68416.m03189 ABC transporter family protein similar to
           GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol.
           6 (4), 343-356 (1997))
          Length = 467

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 9   VKPPRGILMYGPPGTGKTLIARAVA 83
           VKP   + M GP G+GKT +  A+A
Sbjct: 107 VKPGELLAMLGPSGSGKTTLVTALA 131


>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
           repair protein recA, chloroplast [Precursor] SP:Q39199
           from [Arabidopsis thaliana] ;contains Pfam profile:
           PF00154 recA bacterial DNA recombination protein
          Length = 439

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 26/127 (20%)
 Frame = +3

Query: 6   GVKPPRGILMYGPPGTGKTLIA-RAVA--NETGAFFFLINGPEIM----SKLAGESESNL 164
           G+   R + +YGP  +GKT +A  A+A   + G    L++         SK  G    NL
Sbjct: 131 GLPKGRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENL 190

Query: 165 --------RKAFEEADK--NSPAI--IFIDELDAIAPKREKTHGEV-------ERRIVSQ 287
                     A E AD+   S A+  I +D + A+ P+ E   GE+       + R++SQ
Sbjct: 191 IVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAE-IEGEIGMQQMGLQARLMSQ 249

Query: 288 LLTLMDG 308
            L  M G
Sbjct: 250 ALRKMSG 256


>At1g21550.1 68414.m02695 calcium-binding protein, putative contains
           similarity to calcium-binding protein GB:CAB63264
           GI:6580549 from [Lotus japonicus]
          Length = 155

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 156 SNLRKAFEEADKNSPAIIFIDELDAIAPK---REKTHGEVERRIVSQLLTL 299
           ++LR+ F+  DKN   ++ +DEL  I  K    E T  E+E  +  Q L L
Sbjct: 9   NDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDL 59


>At1g13280.1 68414.m01542 allene oxide cyclase family protein
           similar to ERD12 [GI:15320414], allene oxide cyclase
           GI:8977961 from [Lycopersicon esculentum]; contains Pfam
           profile PF06351: Allene oxide cyclase
          Length = 254

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 54  GKTLIARAVANETGAFFFLI--NGPEIMSKLAGESESNLRKAFEEADKNSPAII 209
           G +  AR+  + TG FF  I  +     S+     E N+ + F E D+NSPA++
Sbjct: 48  GLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYE-FNEGDRNSPAVL 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,675
Number of Sequences: 28952
Number of extensions: 297275
Number of successful extensions: 1454
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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