Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0633
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 376 e-104
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 376 e-104
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 375 e-104
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 210 1e-54
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 188 5e-48
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 188 5e-48
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 183 1e-46
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 182 2e-46
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 182 3e-46
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 181 5e-46
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 180 7e-46
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 180 9e-46
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 178 3e-45
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 178 4e-45
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 177 6e-45
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 175 2e-44
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 174 5e-44
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 171 4e-43
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 170 7e-43
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 170 1e-42
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 169 1e-42
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 169 1e-42
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 169 2e-42
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 168 3e-42
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 167 7e-42
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 166 1e-41
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 166 1e-41
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 166 2e-41
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 166 2e-41
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 166 2e-41
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 165 3e-41
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 163 1e-40
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 163 1e-40
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 160 1e-39
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 156 1e-38
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 156 1e-38
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 156 2e-38
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 155 2e-38
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 154 5e-38
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 152 2e-37
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 151 4e-37
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 150 8e-37
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 149 3e-36
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 147 8e-36
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 145 2e-35
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 145 2e-35
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 142 2e-34
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 141 4e-34
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 140 7e-34
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 138 4e-33
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 138 4e-33
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 135 3e-32
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 134 4e-32
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 126 2e-29
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 125 4e-29
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 121 6e-28
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 97 1e-20
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 93 1e-19
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 88 5e-18
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 85 6e-17
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 83 3e-16
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 62 5e-10
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 56 3e-08
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 56 3e-08
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 54 1e-07
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 53 2e-07
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 52 3e-07
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 52 4e-07
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 51 9e-07
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 50 1e-06
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 49 3e-06
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 49 4e-06
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 48 7e-06
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 48 9e-06
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 48 9e-06
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 46 2e-05
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 45 5e-05
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 44 8e-05
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 44 1e-04
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 43 3e-04
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 43 3e-04
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 42 3e-04
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 42 3e-04
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 42 4e-04
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 42 4e-04
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 42 6e-04
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 41 8e-04
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 40 0.001
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 38 0.007
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 38 0.009
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 37 0.012
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 37 0.016
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 36 0.022
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 36 0.022
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor... 36 0.029
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 35 0.050
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 35 0.066
At2g41860.2 68415.m05174 calcium-dependent protein kinase, putat... 34 0.12
At2g41860.1 68415.m05173 calcium-dependent protein kinase, putat... 34 0.12
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 33 0.15
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 33 0.15
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 33 0.20
At4g21880.1 68417.m03164 pentatricopeptide (PPR) repeat-containi... 33 0.27
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 33 0.27
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge... 33 0.27
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge... 33 0.27
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge... 33 0.27
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 32 0.35
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 32 0.47
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 32 0.47
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 32 0.47
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 32 0.47
At4g27420.1 68417.m03941 ABC transporter family protein D.melano... 31 0.62
At2g36380.1 68415.m04464 ABC transporter family protein related ... 31 0.62
At1g73110.1 68414.m08453 ribulose bisphosphate carboxylase/oxyge... 31 0.62
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 0.76
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 31 0.82
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 31 1.1
At3g49210.1 68416.m05378 expressed protein 31 1.1
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 31 1.1
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 31 1.1
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 30 1.4
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 30 1.4
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 30 1.4
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 30 1.4
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR... 30 1.4
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.4
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 30 1.4
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 30 1.4
At1g73170.1 68414.m08466 expressed protein 30 1.4
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 30 1.4
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 30 1.9
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 30 1.9
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR... 30 1.9
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 30 1.9
At5g12180.1 68418.m01429 calcium-dependent protein kinase, putat... 29 2.5
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 29 2.5
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 29 2.5
At1g66400.1 68414.m07541 calmodulin-related protein, putative si... 29 2.5
At1g61950.1 68414.m06988 calcium-dependent protein kinase, putat... 29 2.5
At1g50700.1 68414.m05701 calcium-dependent protein kinase, putat... 29 2.5
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 2.5
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 29 3.3
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 29 3.3
At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR... 29 3.3
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 29 3.3
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 29 3.3
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 29 3.3
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 29 4.4
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR... 29 4.4
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 29 4.4
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 29 4.4
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 4.4
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 29 4.4
At2g34440.1 68415.m04225 MADS-box family protein similar to SP|Q... 29 4.4
At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR... 28 5.8
At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR... 28 5.8
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR... 28 5.8
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 28 5.8
At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS cla... 28 5.8
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 28 5.8
At1g05990.1 68414.m00627 calcium-binding protein, putative stron... 28 5.8
At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp... 28 7.6
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 28 7.6
At5g07800.1 68418.m00894 flavin-containing monooxygenase family ... 28 7.6
At3g57530.1 68416.m06406 calcium-dependent protein kinase, putat... 28 7.6
At3g25620.1 68416.m03189 ABC transporter family protein similar ... 28 7.6
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN... 28 7.6
At1g21550.1 68414.m02695 calcium-binding protein, putative conta... 28 7.6
At1g13280.1 68414.m01542 allene oxide cyclase family protein sim... 28 7.6
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 376 bits (924), Expect = e-104
Identities = 186/251 (74%), Positives = 212/251 (84%), Gaps = 2/251 (0%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEE
Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A+KN+P+IIFIDE+D+IAPKREKT+GEVERRIVSQLLTLMDG+K +HVIVM ATNRPNS
Sbjct: 296 AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 355
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
IDPALRRFGRFDREIDIG+PD GRLE+LRIHTKNMKL +DVDL +I+ ++HG+VGADLA
Sbjct: 356 IDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLA 415
Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDAR--GSQFSGCLHG*LPVRNDEIVXVGVT*DSGG 716
+LC+EAALQ IREKMD+IDLEDD IDA S H + N ++
Sbjct: 416 ALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVSNEHFHTALGNSN---PSALRETVV 472
Query: 717 EVPNVTWTDIG 749
EVPNV+W DIG
Sbjct: 473 EVPNVSWEDIG 483
Score = 175 bits (427), Expect = 2e-44
Identities = 86/206 (41%), Positives = 132/206 (64%), Gaps = 3/206 (1%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G+ P +G+L YGPPG GKTL+A+A+ANE A F + GPE+++ GESE+N+R+ F++A
Sbjct: 510 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356
+++P ++F DELD+IA +R + G+ R+++QLLT MDGM V ++ ATNRP
Sbjct: 570 RQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 629
Query: 357 NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536
+ ID AL R GR D+ I I +PD RL I + + + DVD+ +A + G GAD
Sbjct: 630 DIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGAD 689
Query: 537 LASLCSEAALQQIREKMDLIDLEDDQ 614
+ +C A IRE ++ D+E+++
Sbjct: 690 ITEICQRACKYAIRENIEK-DIENER 714
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +1
Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711
E+LNS+AVS ++F A+ S+ SALRETV
Sbjct: 443 EILNSMAVSNEHFHTALGNSNPSALRETV 471
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 376 bits (924), Expect = e-104
Identities = 184/251 (73%), Positives = 213/251 (84%), Gaps = 2/251 (0%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEE
Sbjct: 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 296
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A+KN+P+IIFIDE+D+IAPKREKTHGEVERRIVSQLLTLMDG+K +HVIVM ATNRPNS
Sbjct: 297 AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 356
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
IDPALRRFGRFDREIDIG+PD GRLE+LRIHTKNMKL +DVDL +++ ++HG+VGADLA
Sbjct: 357 IDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLA 416
Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDAR--GSQFSGCLHG*LPVRNDEIVXVGVT*DSGG 716
+LC+EAALQ IREKMD+IDL+D++IDA S H + N ++
Sbjct: 417 ALCTEAALQCIREKMDVIDLDDEEIDAEILNSMAVSNDHFQTALGNSN---PSALRETVV 473
Query: 717 EVPNVTWTDIG 749
EVPNV+W DIG
Sbjct: 474 EVPNVSWEDIG 484
Score = 176 bits (429), Expect = 1e-44
Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 3/206 (1%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G+ P +G+L YGPPG GKTL+A+A+ANE A F I GPE+++ GESE+N+R+ F++A
Sbjct: 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 570
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356
+++P ++F DELD+IA +R + G+ R+++QLLT MDGM V ++ ATNRP
Sbjct: 571 RQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 630
Query: 357 NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536
+ IDPAL R GR D+ I I +PD R +I + + + DVDL +A + G GAD
Sbjct: 631 DIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGAD 690
Query: 537 LASLCSEAALQQIREKMDLIDLEDDQ 614
+ +C + IRE ++ D+E ++
Sbjct: 691 ITEICQRSCKYAIRENIEK-DIEKER 715
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +1
Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711
E+LNS+AVS D+F+ A+ S+ SALRETV
Sbjct: 444 EILNSMAVSNDHFQTALGNSNPSALRETV 472
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 375 bits (923), Expect = e-104
Identities = 186/251 (74%), Positives = 212/251 (84%), Gaps = 2/251 (0%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEE
Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A+KN+P+IIFIDE+D+IAPKREKT+GEVERRIVSQLLTLMDG+K +HVIVM ATNRPNS
Sbjct: 296 AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 355
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
IDPALRRFGRFDREIDIG+PD GRLE+LRIHTKNMKL +DVDL +I+ ++HG+VGADLA
Sbjct: 356 IDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLA 415
Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDAR--GSQFSGCLHG*LPVRNDEIVXVGVT*DSGG 716
+LC+EAALQ IREKMD+IDLEDD IDA S H + N ++
Sbjct: 416 ALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSN---PSALRETVV 472
Query: 717 EVPNVTWTDIG 749
EVPNV+W DIG
Sbjct: 473 EVPNVSWNDIG 483
Score = 172 bits (418), Expect = 2e-43
Identities = 86/207 (41%), Positives = 129/207 (62%), Gaps = 4/207 (1%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G+ P +G+L YGPPG GKTL+A+A+ANE A F + GPE+++ GESE+N+R+ F++A
Sbjct: 510 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569
Query: 186 DKNSPAIIFIDELDAIAPKR----EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
+++P ++F DELD+IA +R G R+++QLLT MDGM V ++ ATNR
Sbjct: 570 RQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 629
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
P+ ID AL R GR D+ I I +PD RL I + + + DVD+ +A + G GA
Sbjct: 630 PDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGA 689
Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQ 614
D+ +C A IRE ++ D+E ++
Sbjct: 690 DITEICQRACKYAIRENIEK-DIEKEK 715
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +1
Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711
E+LNS+AV+ ++F A+ S+ SALRETV
Sbjct: 443 EILNSMAVTNEHFHTALGNSNPSALRETV 471
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 210 bits (512), Expect = 1e-54
Identities = 98/197 (49%), Positives = 143/197 (72%), Gaps = 1/197 (0%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G++P +G+L++GPPGTGKT +AR A +G FF +NGPEI+S+ GESE L + F
Sbjct: 413 LGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRS 472
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A +PA++FID+LDAIAP R++ E+ +R+V+ LL LMDG+ ++ V+V+AATNRP+S
Sbjct: 473 ASNATPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDS 532
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADL 539
I+PALRR GR DREI+IG+P +T R +IL I + M+ ++ + Q+A +HG VGADL
Sbjct: 533 IEPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHSLSNIQVEQLAMATHGFVGADL 592
Query: 540 ASLCSEAALQQIREKMD 590
++LC EAA +R +D
Sbjct: 593 SALCCEAAFVCLRRHLD 609
Score = 187 bits (455), Expect = 8e-48
Identities = 94/213 (44%), Positives = 138/213 (64%), Gaps = 2/213 (0%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG +PP GILM+GPPG KTL+ARAVA+E F + GPE+ SK GESE +R F +
Sbjct: 753 IGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAK 812
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356
A N+P+IIF DE+D++A R K + V R++SQLL +DG+ + V V+AATNRP
Sbjct: 813 ARANAPSIIFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRP 872
Query: 357 NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536
+ ID AL R GRFDR + +G P+ T R IL+IH + + D+ L ++A+ + G+ GAD
Sbjct: 873 DKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLKELASITKGYTGAD 932
Query: 537 LASLCSEAALQQIREKMDLIDLEDDQIDARGSQ 635
++ +C EAA+ + E +++ ++ + A SQ
Sbjct: 933 ISLICREAAIAALEESLEMEEISMRHLKAAISQ 965
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 188 bits (457), Expect = 5e-48
Identities = 98/211 (46%), Positives = 134/211 (63%), Gaps = 5/211 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K P+G+L+ GPPGTGKTL+A+A+A E G FF ++G E + G S R F +
Sbjct: 251 LGAKIPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNK 310
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A NSP I+FIDE+DA+ R G + + ++Q+LT MDG ++ VIV+AATNR
Sbjct: 311 AKANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNR 370
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
P +D AL R GRFDR++ +G+PD GR EIL++H+++ KL DV L IA + G GA
Sbjct: 371 PEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGA 430
Query: 534 DLASLCSEAALQQIREKMDLIDLE--DDQID 620
DLA+L +EAA+ R D I L DD ID
Sbjct: 431 DLANLMNEAAILAGRRGKDKITLTEIDDSID 461
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439: Bromodomain
Length = 1210
Score = 188 bits (457), Expect = 5e-48
Identities = 96/208 (46%), Positives = 134/208 (64%), Gaps = 6/208 (2%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVA---NETG--AFFFLINGPEIMSKLAGESESNLRKA 173
+ PPRG+L+ GPPGTGKTLIARA+A ++ G F++ G +++SK GE+E L+
Sbjct: 412 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLL 471
Query: 174 FEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
FEEA +N P+IIF DE+D +AP R ++ IVS LL LMDG+ V+++ ATNR
Sbjct: 472 FEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 531
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL-XQIAAESHGHVG 530
++ID ALRR GRFDRE + +P R EIL IHT+ K +L ++AA G+ G
Sbjct: 532 VDAIDGALRRPGRFDREFNFSLPGCEARAEILDIHTRKWKHPPTRELKEELAATCVGYCG 591
Query: 531 ADLASLCSEAALQQIREKMDLIDLEDDQ 614
ADL +LC+EAA++ REK + DD+
Sbjct: 592 ADLKALCTEAAIRAFREKYPQVYTSDDK 619
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 183 bits (446), Expect = 1e-46
Identities = 110/270 (40%), Positives = 155/270 (57%), Gaps = 21/270 (7%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IGVKPP GIL +GPPG GKT +A A+ANE G F+ I+ E++S ++G SE N+R+ F +
Sbjct: 262 IGVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSK 321
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGM----------KKSSHVI 332
A + +P+I+FIDE+DAI KRE E+E+RIV+QLLT MDG + V+
Sbjct: 322 AYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVL 381
Query: 333 VMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAE 512
V+ ATNRP+++DPALRR GRF+ EI + PD R EIL + + ++L D +IA
Sbjct: 382 VIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARL 441
Query: 513 SHGHVGADLASLCSEAALQQIREKMDLI------DLEDDQIDARGSQFSGCLHG*LPVRN 674
+ G VGADL S+ A + I+ +D D EDD+ R L +
Sbjct: 442 TPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDGEDDKSWLRMPWPEEELEKLFVKMS 501
Query: 675 D-----EIVXVGVT*DSGGEVPNVTWTDIG 749
D +V +T + VP+V W D+G
Sbjct: 502 DFEEAVNLVQASLTREGFSIVPDVKWDDVG 531
Score = 153 bits (370), Expect = 2e-37
Identities = 83/205 (40%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
GV G L+YGPPG GKTLIA+A ANE GA F I G E+++K GESE +R F+ A
Sbjct: 558 GVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRA 617
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSI 365
+P +IF DE+DA+ R K V R+++Q L +DG ++ +V V+ ATNRP+ +
Sbjct: 618 RTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGER-RNVYVIGATNRPDVV 676
Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAES-HGHVGADLA 542
DPA R GRF + + +P+A R IL+ + + VDL IA + G GADLA
Sbjct: 677 DPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLA 736
Query: 543 SLCSEAALQQIREKMDLIDLEDDQI 617
L +A Q + E + + +D +
Sbjct: 737 HLVQKATFQAVEEMIGSSESSEDDV 761
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 182 bits (443), Expect = 2e-46
Identities = 93/211 (44%), Positives = 135/211 (63%), Gaps = 5/211 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K P+G+L+ GPPGTGKTL+A+A+A E G FF I+G E + G S +R F++
Sbjct: 255 VGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKK 314
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A +N+P I+F+DE+DA+ +R G + + ++QLLT MDG + ++ VIV+AATNR
Sbjct: 315 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNR 374
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
+ +D AL R GRFDR++ + +PD GR +IL++H N K +DV L IA + G GA
Sbjct: 375 ADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGA 434
Query: 534 DLASLCSEAALQQIREKMDLIDLE--DDQID 620
DLA+L +EAA+ R I + DD ID
Sbjct: 435 DLANLLNEAAILAGRRARTSISSKEIDDSID 465
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 182 bits (442), Expect = 3e-46
Identities = 105/256 (41%), Positives = 149/256 (58%), Gaps = 7/256 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+K PRG+L+YGPPGTGKT + RAV E A +++ + AGESE LR+AF E
Sbjct: 51 LGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAE 110
Query: 183 ADKNS----PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSS---HVIVMA 341
A ++ P++IFIDE+D + P+R+ E + RI SQL TLMD K SS V+V+A
Sbjct: 111 ASSHAVSDKPSVIFIDEIDVLCPRRDARR-EQDVRIASQLFTLMDSNKPSSSAPRVVVVA 169
Query: 342 ATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHG 521
+TNR ++IDPALRR GRFD +++ P+ RL+IL+++TK + L VDL IA +G
Sbjct: 170 STNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNG 229
Query: 522 HVGADLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSGCLHG*LPVRNDEIVXVGVT 701
+VGADL +LC EA + + D + L S ++ G+T
Sbjct: 230 YVGADLEALCREATISASKRSSDSLILTSQDFKIAKSVVGPSINR------------GIT 277
Query: 702 *DSGGEVPNVTWTDIG 749
E+P VTW D+G
Sbjct: 278 ----VEIPKVTWDDVG 289
Score = 180 bits (438), Expect = 9e-46
Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 4/199 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+ P RGIL++GPPG KT +A+A AN A FF ++ E+ S GE E+ LR F+
Sbjct: 315 MGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQR 374
Query: 183 ADKNSPAIIFIDELDAIAPKR----EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350
A SP+IIF DE D +A KR V R++S LLT MDG++++ ++V+AATN
Sbjct: 375 ARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATN 434
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
RP +ID AL R GRFD + + PD R EIL++HT+NM LGDDVDL +IA E+ G
Sbjct: 435 RPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTG 494
Query: 531 ADLASLCSEAALQQIREKM 587
A+L LC E+ +RE +
Sbjct: 495 AELEGLCRESGTVSLRENI 513
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 181 bits (440), Expect = 5e-46
Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G + PRG+L+ GPPGTGKTL+ARAVA E G FF ++ E + G + +R F
Sbjct: 362 LGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNA 421
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A KNSP+IIFIDELDA+ KR ++ + + ++QLLT MDG + + VIV+AATNRP +
Sbjct: 422 ARKNSPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEA 481
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGHVGAD 536
+D AL R GRF R++ + PD GR +IL IH +++ L +D L +A+ + G VGAD
Sbjct: 482 LDSALCRPGRFSRKVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFVGAD 541
Query: 537 LASLCSEAALQQIREKMDLIDLED 608
LA++ +EAAL R + + ED
Sbjct: 542 LANIVNEAALLAARRGGEAVARED 565
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 180 bits (439), Expect = 7e-46
Identities = 93/210 (44%), Positives = 132/210 (62%), Gaps = 3/210 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K P+G L+ GPPGTGKTL+ARAVA E G FF E + G S +R FE+
Sbjct: 290 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEK 349
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A +P I+FIDE+DA+ +R G + + ++QLLT MDG +S VIV+AATNR
Sbjct: 350 AKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 409
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
P+ +D AL R GRFDR++ + PD GR++IL++H++ LG DVD ++A + G GA
Sbjct: 410 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGA 469
Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDA 623
DL +L +EAA+ R ++ I +D+ DA
Sbjct: 470 DLQNLMNEAAILAARRELKEIS-KDEISDA 498
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 180 bits (438), Expect = 9e-46
Identities = 92/210 (43%), Positives = 132/210 (62%), Gaps = 3/210 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K P+G L+ GPPGTGKTL+ARAVA E G FF E + G S +R FE+
Sbjct: 278 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEK 337
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A +P I+FIDE+DA+ +R G + + ++QLLT MDG +S VIV+AATNR
Sbjct: 338 AKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 397
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
P+ +D AL R GRFDR++ + PD GR++IL++H++ +G DVD ++A + G GA
Sbjct: 398 PDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGA 457
Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDA 623
DL +L +EAA+ R ++ I +D+ DA
Sbjct: 458 DLQNLMNEAAILAARRELKEIS-KDEISDA 486
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 178 bits (434), Expect = 3e-45
Identities = 89/197 (45%), Positives = 125/197 (63%), Gaps = 3/197 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG+KPP+G+++YG PGTGKTL+A+AVAN T A F + G E++ K G+ +R+ F
Sbjct: 217 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRV 276
Query: 183 ADKNSPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
AD SP+I+FIDE+DA+ KR H GE E +R + +LL +DG V V+ ATNR
Sbjct: 277 ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 336
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
S+DPAL R GR DR+I+ +PD R I +IHT M L +DV+L + GA
Sbjct: 337 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGA 396
Query: 534 DLASLCSEAALQQIREK 584
D+ ++C+EA L +RE+
Sbjct: 397 DIKAICTEAGLLALRER 413
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 178 bits (433), Expect = 4e-45
Identities = 91/211 (43%), Positives = 134/211 (63%), Gaps = 5/211 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G + P+G+L+ GPPGTGKTL+A+A+A E G FF I+G E + G S +R F++
Sbjct: 248 VGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKK 307
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A +N+P I+F+DE+DA+ +R G + + ++QLLT MDG + ++ VIV+AATNR
Sbjct: 308 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNR 367
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
+ +D AL R GRFDR++ + +PD GR +IL++H+ N K V L IA + G GA
Sbjct: 368 ADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGA 427
Query: 534 DLASLCSEAALQQIREKMDLIDLE--DDQID 620
DLA+L +EAA+ R I + DD ID
Sbjct: 428 DLANLLNEAAILAGRRGKTAISSKEIDDSID 458
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 177 bits (431), Expect = 6e-45
Identities = 95/208 (45%), Positives = 129/208 (62%), Gaps = 6/208 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G +PPRG+L+ G PGTGKTL+A+AVA E+ F + E + G S +R F
Sbjct: 357 LGARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFAR 416
Query: 183 ADKNSPAIIFIDELDAIAPKRE----KTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350
A K +P+IIFIDE+DA+A R+ + + ++QLLT MDG SS VIV+ ATN
Sbjct: 417 AKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATN 476
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT--KNMKLGDDVDLXQIAAESHGH 524
R + +DPALRR GRFDR + + PD GR IL++H K + LGDDV+L IA+ + G
Sbjct: 477 RADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGF 536
Query: 525 VGADLASLCSEAALQQIREKMDLIDLED 608
GADLA+L +EAAL R+ +D D
Sbjct: 537 TGADLANLVNEAALLAGRKSKMTVDKID 564
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 175 bits (427), Expect = 2e-44
Identities = 88/197 (44%), Positives = 125/197 (63%), Gaps = 3/197 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG+KPP+G+++YG PGTGKTL+A+AVAN T A F + G E++ K G+ +R+ F
Sbjct: 217 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRV 276
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
AD SP+I+FIDE+DA+ KR + GE E +R + +LL +DG V V+ ATNR
Sbjct: 277 ADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 336
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
S+DPAL R GR DR+I+ +PD R I +IHT M L +DV+L + GA
Sbjct: 337 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGA 396
Query: 534 DLASLCSEAALQQIREK 584
D+ ++C+EA L +RE+
Sbjct: 397 DIKAICTEAGLLALRER 413
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 174 bits (424), Expect = 5e-44
Identities = 94/194 (48%), Positives = 125/194 (64%), Gaps = 6/194 (3%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G +PPRG+L+ G PGTGKTL+A+AVA E F + E + G S +R F
Sbjct: 353 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFAR 412
Query: 183 ADKNSPAIIFIDELDAIAPKRE---KTHGEVER-RIVSQLLTLMDGMKKSSHVIVMAATN 350
A K +P+IIFIDE+DA+A R+ + ER + ++QLLT MDG +S VIV+ ATN
Sbjct: 413 AKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 472
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT--KNMKLGDDVDLXQIAAESHGH 524
R + +DPALRR GRFDR + + PD GR ILR+H K + LGDDV+L IA+ + G
Sbjct: 473 RADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGF 532
Query: 525 VGADLASLCSEAAL 566
GADLA+L +EAAL
Sbjct: 533 TGADLANLVNEAAL 546
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 171 bits (416), Expect = 4e-43
Identities = 87/205 (42%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+KPP+G+L+YGPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F
Sbjct: 168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNY 227
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A ++ P IIF+DE+DAI +R E T + E +R + +LL +DG + V ++ ATNR
Sbjct: 228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 287
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
P+ +DPAL R GR DR+I+I +P+ R+EIL+IH + ++D I G GA
Sbjct: 288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGA 347
Query: 534 DLASLCSEAALQQIREKMDLIDLED 608
DL ++C+EA + IR + D + ED
Sbjct: 348 DLRNICTEAGMFAIRAERDYVIHED 372
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 170 bits (414), Expect = 7e-43
Identities = 87/201 (43%), Positives = 128/201 (63%), Gaps = 3/201 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG+ PPRG+L+YGPPGTGKT++A+AVAN T A F + G E + K GE +R F
Sbjct: 184 IGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRL 243
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A +N+PAIIFIDE+DAIA R +T + E +RI+ +LL MDG ++ +V V+ ATNR
Sbjct: 244 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR 303
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
+++DPAL R GR DR+I+ +PD + + ++ T M L D+VDL + A
Sbjct: 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAA 363
Query: 534 DLASLCSEAALQQIREKMDLI 596
++A++C EA + +R+ +I
Sbjct: 364 EIAAICQEAGMHAVRKNRYVI 384
>At4g23940.1 68417.m03443 FtsH protease, putative contains similarity
to zinc dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 946
Score = 170 bits (413), Expect = 1e-42
Identities = 92/218 (42%), Positives = 131/218 (60%), Gaps = 11/218 (5%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+KPP G+L+ GPPG GKTL+A+A+A E G F+ + G E + L G + +R F+
Sbjct: 458 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKR 517
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRI-----------VSQLLTLMDGMKKSSHV 329
A N P++IFIDE+DA+A +R+ E ++ ++QLL +DG V
Sbjct: 518 AKVNKPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTLNQLLIELDGFDTGKGV 577
Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAA 509
I + ATNR + +DPAL R GRFDR+I + P+A GRL+IL+IH +K+ D VDL A+
Sbjct: 578 IFLGATNRRDLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMSDSVDLSSYAS 637
Query: 510 ESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDA 623
G GA LA L EAAL +R+ + I L+ D DA
Sbjct: 638 NLPGWSGAKLAQLVQEAALVAVRKTHNSI-LQSDMDDA 674
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 169 bits (412), Expect = 1e-42
Identities = 86/205 (41%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+KPP+G+L+YGPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F
Sbjct: 168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNY 227
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A ++ P IIF+DE+DAI +R E T + E +R + +LL +DG V ++ ATNR
Sbjct: 228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNR 287
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
P+ +DPAL R GR DR+I+I +P+ R++IL+IH + ++D I + G GA
Sbjct: 288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGA 347
Query: 534 DLASLCSEAALQQIREKMDLIDLED 608
DL ++C+EA + IR + D + ED
Sbjct: 348 DLRNICTEAGMFAIRAERDYVIHED 372
>At3g16290.1 68416.m02056 FtsH protease, putative contains similarity
to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 169 bits (412), Expect = 1e-42
Identities = 91/215 (42%), Positives = 135/215 (62%), Gaps = 7/215 (3%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
GVK P GIL+ GPPG GKTL+A+AVA E G FF I+ + + G S +R ++EA
Sbjct: 439 GVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEA 498
Query: 186 DKNSPAIIFIDELDAIAPKRE--KTHGEVER-RIVSQLLTLMDGMKKSSHVIVMAATNRP 356
+N+P+++FIDELDA+ +R K G ER ++QLL +DG + VI +A+TNRP
Sbjct: 499 RENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVSLDGFEGRGEVITIASTNRP 558
Query: 357 NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536
+ +DPAL R GRFDR+I I P GR+EIL++H + + +D+D +A+ + G VGA+
Sbjct: 559 DILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDLDYMAVASMTDGMVGAE 618
Query: 537 LASLCSEAALQQIREKMDLIDLED----DQIDARG 629
LA++ AA+ +R+ + +D QI+ RG
Sbjct: 619 LANIVEIAAINMMRDGRTELTTDDLLQAAQIEERG 653
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 169 bits (411), Expect = 2e-42
Identities = 85/217 (39%), Positives = 128/217 (58%), Gaps = 3/217 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+ PP+G+L YGPPGTGKTL+ARAVAN T A F + G E++ K GE +R+ F+
Sbjct: 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQM 256
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A I+F DE+DAI R + G+ E +R + +++ +DG ++ V+ ATNR
Sbjct: 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
P+++DPAL R GR DR+++ G+PD R +I +IHT+ M D+ +A GA
Sbjct: 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGA 376
Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSG 644
D+ S+C+EA + IR + + E D +DA G
Sbjct: 377 DIRSVCTEAGMYAIRARRKTV-TEKDFLDAVNKVIKG 412
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 168 bits (409), Expect = 3e-42
Identities = 84/205 (40%), Positives = 127/205 (61%), Gaps = 3/205 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+GV+PP+G+L+YGPPGTGKTL+ARA A +T A F + GP+++ G+ +R AF+
Sbjct: 200 LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQL 259
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A + +P IIFIDE+DAI KR + G+ E +R + +LL +DG + V+AATNR
Sbjct: 260 AKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNR 319
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
+ +DPAL R GR DR+I+ P R IL+IH++ M + DV+ ++A + GA
Sbjct: 320 ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGA 379
Query: 534 DLASLCSEAALQQIREKMDLIDLED 608
L ++C EA + +R ++ ED
Sbjct: 380 QLKAVCVEAGMLALRRDATEVNHED 404
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 167 bits (406), Expect = 7e-42
Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 5/206 (2%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G++ G+L+YGPPGTGKTL+A+AVA E F + GPE+++ GESE N+R FE+A
Sbjct: 687 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFEKA 746
Query: 186 DKNSPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGMKKSSH-VIVMAATNRP 356
P +IF DELD++AP R + G V R+VSQ+L +DG+ SS + ++ A+NRP
Sbjct: 747 RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRP 806
Query: 357 NSIDPALRRFGRFDREIDIGI-PDATGRLEILRIHTKNMKLGDDVDLXQIAAESHG-HVG 530
+ IDPAL R GRFD+ + +G+ DA+ R +L+ T+ KL +DV L +A + G
Sbjct: 807 DLIDPALLRPGRFDKLLYVGVNADASYRERVLKALTRKFKLSEDVSLYSVAKKCPSTFTG 866
Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608
AD+ +LC++A Q + K+ D D
Sbjct: 867 ADMYALCADAWFQAAKRKVSKSDSGD 892
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 166 bits (404), Expect = 1e-41
Identities = 87/201 (43%), Positives = 123/201 (61%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K P+GIL+ G PGTGKTL+A+A+A E G FF G E G +R F+
Sbjct: 390 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQA 449
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A K +P IIFIDE+DA+ R++ G ++ + QLL MDG +++ +IVMAATN P+
Sbjct: 450 AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTL-HQLLVEMDGFEQNEGIIVMAATNLPDI 508
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
+DPAL R GRFDR I + PD GR EIL ++ + + +DVD+ IA + G GADLA
Sbjct: 509 LDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLA 568
Query: 543 SLCSEAALQQIREKMDLIDLE 605
+L + AA++ E + + E
Sbjct: 569 NLVNIAAIKAAVEGAEKLSSE 589
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 166 bits (404), Expect = 1e-41
Identities = 84/205 (40%), Positives = 126/205 (61%), Gaps = 3/205 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G++PP+G+L+YGPPGTGKTL+ARA A +T A F + GP+++ G+ +R AF
Sbjct: 199 LGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLL 258
Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353
A + SP IIFIDE+DAI KR + G+ E +R + +LL +DG + V+AATNR
Sbjct: 259 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533
+ +DPAL R GR DR+I+ P R IL+IH++ M + DV+ ++A + GA
Sbjct: 319 ADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGA 378
Query: 534 DLASLCSEAALQQIREKMDLIDLED 608
L ++C EA + +R ++ ED
Sbjct: 379 QLKAVCVEAGMLALRRDATEVNHED 403
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 166 bits (403), Expect = 2e-41
Identities = 83/206 (40%), Positives = 136/206 (66%), Gaps = 4/206 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+ P+G+L+YGPPGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F
Sbjct: 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVM 249
Query: 183 ADKNSPAIIFIDELDAIAPKREKT---HGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATN 350
A +++P+IIF+DE+D+I R ++ +G+ E +R + +LL +DG + S+ + V+ ATN
Sbjct: 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
R + +D AL R GR DR+I+ P+ R +IL+IH++ M L +DL +IA + +G G
Sbjct: 310 RIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369
Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608
A+L ++C+EA + +RE+ + ED
Sbjct: 370 AELKAVCTEAGMFALRERRVHVTQED 395
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 166 bits (403), Expect = 2e-41
Identities = 83/206 (40%), Positives = 136/206 (66%), Gaps = 4/206 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+ P+G+L+YGPPGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F
Sbjct: 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVM 249
Query: 183 ADKNSPAIIFIDELDAIAPKREKT---HGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATN 350
A +++P+IIF+DE+D+I R ++ +G+ E +R + +LL +DG + S+ + V+ ATN
Sbjct: 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
R + +D AL R GR DR+I+ P+ R +IL+IH++ M L +DL +IA + +G G
Sbjct: 310 RIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369
Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608
A+L ++C+EA + +RE+ + ED
Sbjct: 370 AELKAVCTEAGMFALRERRVHVTQED 395
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 166 bits (403), Expect = 2e-41
Identities = 85/203 (41%), Positives = 121/203 (59%), Gaps = 6/203 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLR 167
+G+ PPRGIL++G PGTGKTL+ RA+ +F G + + K G++E LR
Sbjct: 748 LGLTPPRGILLHGHPGTGKTLVVRALIGSLARGNRRIAYFARKGADCLGKYVGDAERQLR 807
Query: 168 KAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAAT 347
F+ A+K P+IIF DE+D +APKR + + +VS LL L+DG+K V+V+ AT
Sbjct: 808 LLFQVAEKCQPSIIFFDEIDGLAPKRSRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGAT 867
Query: 348 NRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNM-KLGDDVDLXQIAAESHGH 524
N P++IDPALRR GRFDREI +P R I+ +HT+ K L IA E+ G
Sbjct: 868 NYPDAIDPALRRPGRFDREIYFPLPSVDDRAAIISLHTRKWPKPVSGYLLKWIAKETAGF 927
Query: 525 VGADLASLCSEAALQQIREKMDL 593
GAD+ +LC++AA+ + L
Sbjct: 928 AGADIQALCTQAAMIALNRSFPL 950
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 165 bits (401), Expect = 3e-41
Identities = 87/202 (43%), Positives = 119/202 (58%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K P+G+L+ GPPGTGKT++ARA+A E G FF +G E G +R F
Sbjct: 255 LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSA 314
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362
A K SP IIFIDE+DAI R + + ++Q+L +DG K++ +IV+AATN P S
Sbjct: 315 AKKCSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPES 374
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
+D AL R GRFDR I + PD GR +IL H + +DVDL IA + G GADLA
Sbjct: 375 LDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLA 434
Query: 543 SLCSEAALQQIREKMDLIDLED 608
+L + AAL+ + + + D
Sbjct: 435 NLVNVAALKAAMDGSKDVTMSD 456
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 163 bits (395), Expect = 1e-40
Identities = 89/199 (44%), Positives = 126/199 (63%), Gaps = 5/199 (2%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K P+G L+ GPPGTGKTL+A+A A E+G F I+G + M G S +R F+E
Sbjct: 350 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQE 409
Query: 183 ADKNSPAIIFIDELDAIAPKREK--THGEVERR-IVSQLLTLMDGMKKSSHVIVMAATNR 353
A + +P+IIFIDE+DAI R + G ER ++QLL MDG ++ V+V+A TNR
Sbjct: 410 ARQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 469
Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGHV 527
P+ +D AL R GRFDR+I I PD GR +I +I+ K +KL + ++AA + G
Sbjct: 470 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFA 529
Query: 528 GADLASLCSEAALQQIREK 584
GAD+A++C+EAAL R +
Sbjct: 530 GADIANVCNEAALIAARHE 548
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 163 bits (395), Expect = 1e-40
Identities = 84/211 (39%), Positives = 125/211 (59%), Gaps = 4/211 (1%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G+ PP+G+L YGPPG+GKTL+ARAVAN TGA F + G E++ K GE +R+ F+
Sbjct: 234 LGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQM 293
Query: 183 ADKNSPAIIFIDELDAIAPKR----EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350
A I+F DE+DAI R + EV+R ++ ++L +DG ++ V+ ATN
Sbjct: 294 ARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTML-EILYQLDGFDARGNIKVLMATN 352
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
RP+ +DPAL R GR DR+++ +PD GR +I +IHT+ M D+ +A G
Sbjct: 353 RPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTG 412
Query: 531 ADLASLCSEAALQQIREKMDLIDLEDDQIDA 623
AD+ S+C EA + I + + E D +DA
Sbjct: 413 ADIRSVCIEAGMYAIGARRKSV-TEKDFLDA 442
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 160 bits (388), Expect = 1e-39
Identities = 88/200 (44%), Positives = 126/200 (63%), Gaps = 6/200 (3%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G K P+G L+ GPPGTGKTL+A+A A E+ F I+G + M G S +R F+E
Sbjct: 355 LGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQE 414
Query: 183 ADKNSPAIIFIDELDAIAPKREK---THGEVERR-IVSQLLTLMDGMKKSSHVIVMAATN 350
A + +P+IIFIDE+DAI R + + G ER ++QLL MDG ++ V+V+A TN
Sbjct: 415 ARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 474
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGH 524
RP+ +D AL R GRFDR+I I PD GR +I +I+ K +KL + ++AA + G
Sbjct: 475 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGF 534
Query: 525 VGADLASLCSEAALQQIREK 584
GAD+A++C+EAAL R +
Sbjct: 535 AGADIANVCNEAALIAARHE 554
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family
Length = 829
Score = 156 bits (379), Expect = 1e-38
Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
+KP RGIL++GPPGTGKT++A+A+A E GA F ++ I SK GE E N+R F A
Sbjct: 552 LKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAS 611
Query: 189 KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359
K SP IIF+DE+D++ +R + E R+I ++ ++ DG+ K ++V+AATNRP
Sbjct: 612 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPF 671
Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
+D A+ R RF+R I +G+P R +ILR K+ +++D ++A + G+ G+DL
Sbjct: 672 DLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGYTGSDL 729
Query: 540 ASLCSEAALQQIREKMDLIDLEDDQ 614
+LC+ AA + +RE + ++D +
Sbjct: 730 KNLCTTAAYRPVRELIQQERIKDTE 754
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family
Length = 824
Score = 156 bits (379), Expect = 1e-38
Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
+KP RGIL++GPPGTGKT++A+A+A E GA F ++ I SK GE E N+R F A
Sbjct: 547 LKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAS 606
Query: 189 KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359
K SP IIF+DE+D++ +R + E R+I ++ ++ DG+ K ++V+AATNRP
Sbjct: 607 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPF 666
Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
+D A+ R RF+R I +G+P R +ILR K+ +++D ++A + G+ G+DL
Sbjct: 667 DLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGYTGSDL 724
Query: 540 ASLCSEAALQQIREKMDLIDLEDDQ 614
+LC+ AA + +RE + ++D +
Sbjct: 725 KNLCTTAAYRPVRELIQQERIKDTE 749
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 156 bits (378), Expect = 2e-38
Identities = 81/191 (42%), Positives = 115/191 (60%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 206
+L+YGPPG GKT I A A F + GPE+++K G SE +R F +A +P I
Sbjct: 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCI 940
Query: 207 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRF 386
+F DE D+IAPKR + V R+V+Q LT +DG++ + V V AAT+RP+ +DPAL R
Sbjct: 941 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRP 1000
Query: 387 GRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASLCSEAAL 566
GR DR + P RLEIL + ++ + + DD+DL IA + G GADL +L S+A L
Sbjct: 1001 GRLDRLLLCDFPSPPERLEILTVLSRKLLMADDIDLEPIALMTEGFSGADLQALLSDAQL 1060
Query: 567 QQIREKMDLID 599
+ E ++ D
Sbjct: 1061 AAVHEYLNRED 1071
Score = 63.7 bits (148), Expect = 1e-10
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 19/266 (7%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVA------NETGAFFFLINGPEIMSKLAGESESNLRK 170
+ P IL+YGPPG+GKT++ARA A + A L++ + + L
Sbjct: 590 IPSPGHILIYGPPGSGKTILARAAAKYFEEQKDLLAHVILVSCSTLALEKVQHIHHVLSS 649
Query: 171 AFEEADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLT-LMD--GMKKSSH-- 326
E +++P++I +D+LD+I T G V ++++ LT ++D G ++S
Sbjct: 650 VIAEGLEHAPSVIILDDLDSIISSSSDTEGTQASVGVTMLTKFLTDVIDDYGEYRNSSCG 709
Query: 327 ---VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR--IHTKNMKLGDDVD 491
+ +A+ I L GRFD + + P + R IL+ I + + +D+
Sbjct: 710 IGPLAFVASVQSLEQIPQTLSSSGRFDFHVQLAAPATSERGAILKHEIQKRLLDCSEDI- 768
Query: 492 LXQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSGCLHG*LPVR 671
L +AA+ G+ DL L A I + L + + + F+ +H +PV
Sbjct: 769 LLNLAAKCEGYDAYDLEILVDRAVHAAIGRHLPL-ESNISKYNLVKEDFTRAMHDFVPVA 827
Query: 672 NDEIVXVGVT*DSGGEVPNVTWTDIG 749
+I S E + W D+G
Sbjct: 828 MRDIT------KSASEGGRLGWEDVG 847
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 155 bits (377), Expect = 2e-38
Identities = 85/210 (40%), Positives = 131/210 (62%), Gaps = 9/210 (4%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G+ P+G+L++GPPGTGKTL+A+A+A E G FF NG + + G + S ++ F +
Sbjct: 345 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASS 404
Query: 186 DKNSPAIIFIDELDAIAPKR---EKTHGEVER-RIVSQLLTLMDGMK-KSSHVIVMAATN 350
+P+IIFIDE+DAI KR + G ER + + Q+LT MDG K +S V+V+ ATN
Sbjct: 405 RSYAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVTTSQVLVIGATN 464
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN--MKLGDDVD--LXQIAAESH 518
R + +DPAL R GRFD+ I +G+P GRL IL++H +N + D+ + L ++A +
Sbjct: 465 RLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRSEDEKEELLQEVAENTE 524
Query: 519 GHVGADLASLCSEAALQQIREKMDLIDLED 608
GA+L ++ +EA + R+ +D I E+
Sbjct: 525 DFTGAELQNVLNEAGILTARKDLDYIGREE 554
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 154 bits (374), Expect = 5e-38
Identities = 78/194 (40%), Positives = 117/194 (60%), Gaps = 2/194 (1%)
Frame = +3
Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
P +G+L+YGPPGTGKT++A+A+A E+GA F + +MSK G+++ + F A K
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKL 177
Query: 195 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH--VIVMAATNRPNSID 368
PAIIFIDE+++ +R T E + ++ + L DG H V+V+AATNRP+ +D
Sbjct: 178 QPAIIFIDEVESFLGQRRSTDHEAMANMKTEFMALWDGFSTDPHARVMVLAATNRPSELD 237
Query: 369 PALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASL 548
A+ R R + +IGIPD R EIL++ K ++ D+D IA G+ G+D+ L
Sbjct: 238 EAILR--RLPQAFEIGIPDRRERAEILKVTLKGERVEPDIDFDHIARLCEGYTGSDIFEL 295
Query: 549 CSEAALQQIREKMD 590
C +AA IRE +D
Sbjct: 296 CKKAAYFPIREILD 309
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family
Length = 726
Score = 152 bits (369), Expect = 2e-37
Identities = 82/205 (40%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
+KP RGIL++GPPGTGKT++A+A+ANE GA F ++ I SK GE E N+R F A
Sbjct: 445 LKPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAA 504
Query: 189 KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGMKKSS--HVIVMAATNRPN 359
K SP IIF+DE+D++ +R + E R+I ++ +T DG+ ++ ++V+AATNRP
Sbjct: 505 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMSNAGDRILVLAATNRPF 564
Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
+D A+ R RF+R I +G+P R +ILR K +++D ++A + G+ G+DL
Sbjct: 565 DLDEAIIR--RFERRIMVGLPSVESREKILRTLLSKEKT-ENLDFQELAQMTDGYSGSDL 621
Query: 540 ASLCSEAALQQIREKMDLIDLEDDQ 614
+ C+ AA + +RE + L+D +
Sbjct: 622 KNFCTTAAYRPVRELIKQECLKDQE 646
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 151 bits (367), Expect = 4e-37
Identities = 81/215 (37%), Positives = 131/215 (60%), Gaps = 15/215 (6%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFE 179
+G+K +G+L++GPPGTGKTL+AR + G ++NGPE++SK GE+E N+R F
Sbjct: 245 LGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLFA 304
Query: 180 EADKNSPA--------IIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGMKKSSHV 329
+A+++ +I DE+DAI R T V IV+QLLT +DG++ ++V
Sbjct: 305 DAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVEALNNV 364
Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMK----LGDDVDLX 497
+++ TNR + +D AL R GR + +++I +PD GRL+IL+IHT MK LG D++L
Sbjct: 365 LLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQ 424
Query: 498 QIAAESHGHVGADLASLCSEAALQQIREKMDLIDL 602
++AA + + GA+L + A + ++ + DL
Sbjct: 425 ELAARTKNYSGAELEGVVKSATSYALNRQLSMDDL 459
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +3
Query: 30 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE-SNLRKAFEEADKNSPAI 206
L+ GP G+GKT +A + ++ + I E M L+ ++ +++ K FE+A K+ +I
Sbjct: 534 LLEGPSGSGKTALAATIGIDSDFPYVKIVSAETMIGLSESTKCAHIVKVFEDAYKSPMSI 593
Query: 207 IFIDELDAI 233
I +D+++ +
Sbjct: 594 IILDDIERL 602
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 150 bits (364), Expect = 8e-37
Identities = 82/209 (39%), Positives = 129/209 (61%), Gaps = 3/209 (1%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
KP +GIL++GPPGTGKT++A+AVA E A F I+ I SK GE E ++ F A K
Sbjct: 853 KPCKGILLFGPPGTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASK 912
Query: 192 NSPAIIFIDELDAIAPKRE-KTHGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNS 362
SP++IF+DE+D++ +RE E R+I ++ + DG+ ++ V+V+AATNRP
Sbjct: 913 MSPSVIFVDEVDSMLGRREHPREHEASRKIKNEFMMHWDGLTTQERERVLVLAATNRPFD 972
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
+D A+ R R R + +G+PD + R IL++ L D+D+ +IA+ ++G+ G+DL
Sbjct: 973 LDEAVIR--RLPRRLMVGLPDTSNRAFILKVILAKEDLSPDLDIGEIASMTNGYSGSDLK 1030
Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDARG 629
+LC AA + I+E ++ E D A+G
Sbjct: 1031 NLCVTAAHRPIKEILEKEKRERDAALAQG 1059
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 149 bits (360), Expect = 3e-36
Identities = 81/196 (41%), Positives = 121/196 (61%), Gaps = 3/196 (1%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
KP +GIL++GPPGTGKT++A+AVA E GA F I+ I SK GE E ++ F A K
Sbjct: 996 KPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1055
Query: 192 NSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNS 362
+P++IF+DE+D++ +RE E R++ ++ + DG+ K V+V+AATNRP
Sbjct: 1056 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFD 1115
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
+D A+ R R R + + +PDAT R +IL + ++ DVDL IA + G+ G+DL
Sbjct: 1116 LDEAVIR--RLPRRLMVNLPDATNRSKILSVILAKEEIAPDVDLEAIANMTDGYSGSDLK 1173
Query: 543 SLCSEAALQQIREKMD 590
+LC AA IRE ++
Sbjct: 1174 NLCVTAAHFPIREILE 1189
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 147 bits (356), Expect = 8e-36
Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 3/196 (1%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
KP +GIL++GPPGTGKT++A+AVA E GA F I+ I SK GE E ++ F A K
Sbjct: 983 KPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1042
Query: 192 NSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNS 362
+P++IF+DE+D++ +RE E R++ ++ + DG+ K V+V+AATNRP
Sbjct: 1043 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMINWDGLRTKDKERVLVLAATNRPFD 1102
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
+D A+ R R R + + +PD+ R +IL + ++ +DVDL IA + G+ G+DL
Sbjct: 1103 LDEAVIR--RLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAIANMTDGYSGSDLK 1160
Query: 543 SLCSEAALQQIREKMD 590
+LC AA IRE ++
Sbjct: 1161 NLCVTAAHLPIREILE 1176
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 145 bits (352), Expect = 2e-35
Identities = 73/194 (37%), Positives = 118/194 (60%), Gaps = 2/194 (1%)
Frame = +3
Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
P +G+L+YGPPGTGKT++A+A+A E+ A F + +MSK G+++ + F A K
Sbjct: 121 PQKGVLLYGPPGTGKTMLAKAIARESEAVFINVKVSNLMSKWFGDAQKLVSAVFSLAYKL 180
Query: 195 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNSID 368
PAIIFIDE+D+ +R T E + ++ + L DG +++ V+V+AATNRP+ +D
Sbjct: 181 QPAIIFIDEVDSFLGQRRSTDNEAMSNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 240
Query: 369 PALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASL 548
A+ R RF + +IG+PD R +IL++ K + D++ +IA + G+D+ L
Sbjct: 241 EAILR--RFPQSFEIGMPDCQERAQILKVVLKGESVESDINYDRIARLCEDYTGSDIFEL 298
Query: 549 CSEAALQQIREKMD 590
C +AA IRE ++
Sbjct: 299 CKKAAYFPIREILE 312
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family
Length = 640
Score = 145 bits (352), Expect = 2e-35
Identities = 81/215 (37%), Positives = 126/215 (58%), Gaps = 3/215 (1%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
++P +GIL++GPPGTGKTL+A+A+A E GA F I G + SK G++E + F A
Sbjct: 383 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFAT 442
Query: 189 KNSPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359
K +P IIF+DE+D++ R + E RR+ ++ + DG+ K S ++++ ATNRP
Sbjct: 443 KLAPVIIFVDEIDSLLGARGGSSEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPF 502
Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
+D A+ R R R I + +PDA RL+IL+I L D ++A E+ G+ G+DL
Sbjct: 503 DLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTPENLESDFQFEKLAKETEGYSGSDL 560
Query: 540 ASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSG 644
+LC AA + ++E L+++Q AR G
Sbjct: 561 KNLCIAAAYRPVQEL-----LQEEQKGARAEASPG 590
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 142 bits (345), Expect = 2e-34
Identities = 77/201 (38%), Positives = 124/201 (61%), Gaps = 9/201 (4%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
+P +G+LM+GPPGTGKTL+A+AVA E G FF ++ + SK GESE +R F+ A
Sbjct: 270 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARA 329
Query: 192 NSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGMKKSSH--------VIVMAA 344
+P+ IFIDE+D++ R + E RR+ S+LL +DG+ ++ V+V+AA
Sbjct: 330 YAPSTIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAA 389
Query: 345 TNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGH 524
TN P ID ALRR R ++ I I +PD R ++ I+ + +++ DV++ +A + G+
Sbjct: 390 TNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGY 447
Query: 525 VGADLASLCSEAALQQIREKM 587
G DL ++C +A++ +R K+
Sbjct: 448 SGDDLTNVCRDASMNGMRRKI 468
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 141 bits (342), Expect = 4e-34
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 3/194 (1%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
++P +GIL++GPPGTGKTL+A+A+A E GA F I G + SK G++E + F A
Sbjct: 182 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFAS 241
Query: 189 KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359
K +P IIF+DE+D++ R E RR+ ++ + DG+ K S ++++ ATNRP
Sbjct: 242 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPF 301
Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539
+D A+ R R R I + +PDA RL+IL+I L + ++A E+ G+ G+DL
Sbjct: 302 DLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTPENLETGFEFDKLAKETEGYSGSDL 359
Query: 540 ASLCSEAALQQIRE 581
+LC AA + ++E
Sbjct: 360 KNLCIAAAYRPVQE 373
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 140 bits (340), Expect = 7e-34
Identities = 72/193 (37%), Positives = 116/193 (60%), Gaps = 3/193 (1%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
+P RG+L++GPPG GKT++A+AVA+E+ A FF ++ + SK GE+E ++ F+ A
Sbjct: 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLVKTLFQVAIS 306
Query: 192 NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH--VIVMAATNRPNSI 365
P++IF+DE+D+I R + E RR+ S+ L DG+ + VI++ ATN+P +
Sbjct: 307 RQPSVIFMDEIDSIMSTRSTSENEASRRLKSEFLIQFDGVTSNPDDLVIIIGATNKPQEL 366
Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADLA 542
D A+ R R + I + +PD+ R + + K D D+ +I E+ G+ G+DL
Sbjct: 367 DDAVLR--RLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSDGDIDKIVKETEGYSGSDLQ 424
Query: 543 SLCSEAALQQIRE 581
+LC EAA+ IRE
Sbjct: 425 ALCEEAAMMPIRE 437
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 138 bits (334), Expect = 4e-33
Identities = 73/205 (35%), Positives = 125/205 (60%), Gaps = 4/205 (1%)
Frame = +3
Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
P +GIL++GPPGTGKT++A+AVA E FF I+ ++SK G+SE +R F+ A +
Sbjct: 144 PWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHH 203
Query: 195 SPAIIFIDELDAIAPKR---EKTHGEVERRIVSQLLTLMDGMKKSSH-VIVMAATNRPNS 362
+P+ IF+DE+DAI +R ++ E RR+ ++LL MDG++K++ V V+AATN P
Sbjct: 204 APSTIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLAATNLPWE 263
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
+D A+ R R ++ I + +PD R + + + + + + +S G+ G+D+
Sbjct: 264 LDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIR 321
Query: 543 SLCSEAALQQIREKMDLIDLEDDQI 617
LC EAA+Q +R + +++ +D +
Sbjct: 322 ILCKEAAMQPLRRTLAILEDREDVV 346
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 138 bits (334), Expect = 4e-33
Identities = 73/205 (35%), Positives = 125/205 (60%), Gaps = 4/205 (1%)
Frame = +3
Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
P +GIL++GPPGTGKT++A+AVA E FF I+ ++SK G+SE +R F+ A +
Sbjct: 135 PWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHH 194
Query: 195 SPAIIFIDELDAIAPKR---EKTHGEVERRIVSQLLTLMDGMKKSSH-VIVMAATNRPNS 362
+P+ IF+DE+DAI +R ++ E RR+ ++LL MDG++K++ V V+AATN P
Sbjct: 195 APSTIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLAATNLPWE 254
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
+D A+ R R ++ I + +PD R + + + + + + +S G+ G+D+
Sbjct: 255 LDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIR 312
Query: 543 SLCSEAALQQIREKMDLIDLEDDQI 617
LC EAA+Q +R + +++ +D +
Sbjct: 313 ILCKEAAMQPLRRTLAILEDREDVV 337
>At1g79560.1 68414.m09275 FtsH protease, putative contains similarity
to chloroplast FtsH protease GI:5804782 from [Nicotiana
tabacum]
Length = 1008
Score = 135 bits (326), Expect = 3e-32
Identities = 77/215 (35%), Positives = 123/215 (57%), Gaps = 16/215 (7%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESNLRKAFEEADKNS 197
RG+L+ GPPGTGKTL AR +A E+G F +G E S+ +G ++ N + F A +N+
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAKIN--EMFSIARRNA 584
Query: 198 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH---------VIVMAATN 350
PA +F+DE+DAIA + + R L+ +DG K+ + VI + ATN
Sbjct: 585 PAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATN 643
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530
RP+ +D R GR DR + IG+PDA R++I +H+ L +D+D ++ + G G
Sbjct: 644 RPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSG 703
Query: 531 ADLASLCSEAALQQIRE------KMDLIDLEDDQI 617
AD+ +L +EAA+ +R+ + D++D+ D Q+
Sbjct: 704 ADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQL 738
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 134 bits (325), Expect = 4e-32
Identities = 70/196 (35%), Positives = 116/196 (59%), Gaps = 3/196 (1%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
+P R L+YGPPGTGK+ +A+AVA E + FF ++ +++SK GESE + FE A +
Sbjct: 163 RPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARE 222
Query: 192 NSPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGM-KKSSHVIVMAATNRPNSI 365
++P+IIF+DE+D++ R E E RRI ++LL M G+ V+V+AATN P ++
Sbjct: 223 SAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYAL 282
Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADLA 542
D A+RR RFD+ I I +P+A R + ++H + + D + ++ G G+D++
Sbjct: 283 DQAIRR--RFDKRIYIPLPEAKARQHMFKVHLGDTPHNLTEPDFEYLGQKTEGFSGSDVS 340
Query: 543 SLCSEAALQQIREKMD 590
+ + +R+ D
Sbjct: 341 VCVKDVLFEPVRKTQD 356
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 126 bits (303), Expect = 2e-29
Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 6/197 (3%)
Frame = +3
Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
P +G+L++GPPGTGKT+I +A+A E A FF I+ + SK GE E +R F A
Sbjct: 42 PGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCR 101
Query: 195 SPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGMKK-SSHVIVMAATNRPNSI 365
PA+IF+DE+D++ +R K+ GE E RR+ +Q L M+G S ++++ ATNRP +
Sbjct: 102 QPAVIFVDEIDSLLSQR-KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQEL 160
Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKN---MKLGDDVDLXQIAAESHGHVGAD 536
D A RR R + + I +P + R I++ K L DD D+ I + G+ G+D
Sbjct: 161 DEAARR--RLTKRLYIPLPSSEARAWIIQNLLKKDGLFTLSDD-DMNIICNLTEGYSGSD 217
Query: 537 LASLCSEAALQQIREKM 587
+ +L +A + +RE +
Sbjct: 218 MKNLVKDATMGPLREAL 234
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 125 bits (301), Expect = 4e-29
Identities = 72/182 (39%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Frame = +3
Query: 18 PRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK-N 194
PR +L GPPGTGKT AR +AN+ G + +MSK GESE L F +A++
Sbjct: 361 PRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELP 420
Query: 195 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 374
AIIF+DE+DA A R+ E RR++S LL +DG ++ V+V+AATNR +DPA
Sbjct: 421 DGAIIFLDEIDAFAISRDSEMHEATRRVLSVLLRQIDGFEQEKKVVVIAATNRKQDLDPA 480
Query: 375 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASLCS 554
L RFD I +PD R EI+ + K + +L Q+A + G D+ +C
Sbjct: 481 L--ISRFDSMIMFDLPDLQTRQEIIAQYAKQL---SKPELVQLAQATEAMSGRDIRDVCQ 535
Query: 555 EA 560
A
Sbjct: 536 GA 537
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family
Length = 1025
Score = 121 bits (291), Expect = 6e-28
Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 3/209 (1%)
Frame = +3
Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191
KP GIL++GP GTGKT++A+AVA E GA LIN MS+ E E ++ F A K
Sbjct: 768 KPCNGILLFGPSGTGKTMLAKAVATEAGAN--LINMS--MSRWFSEGEKYVKAVFSLASK 823
Query: 192 NSPAIIFIDELDAIAPK-REKTHGEVERRIVSQLLTLMDGMK--KSSHVIVMAATNRPNS 362
SP+IIF+DE++++ + R KT E I++ DG++ + V+V+AATNRP
Sbjct: 824 ISPSIIFLDEVESMLHRYRLKTKNEF---IIN-----WDGLRTNEKERVLVLAATNRPFD 875
Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542
+D A+ R R + +G+PDA R +IL++ L D D+ ++A+ ++G+ G DL
Sbjct: 876 LDEAVIR--RLPHRLMVGLPDARSRSKILKVILSKEDLSPDFDIDEVASMTNGYSGNDLK 933
Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDARG 629
+LC AA ++I E ++ E D A G
Sbjct: 934 NLCVTAARRRIIEIVEKEKSERDAAVAEG 962
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 96.7 bits (230), Expect = 1e-20
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL-AGESESNLRKAFE 179
+G + PRG+L+ G GTGKT +A A+A E + E+ + L G+S +N+R+ F+
Sbjct: 452 MGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSAANVRELFQ 511
Query: 180 EADKNSPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350
A +P IIF+++ D A R K T + ++QLL +DG +K V++MA T
Sbjct: 512 TARDLAPVIIFVEDFDLFAGVRGKFVHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 571
Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILR---IHTKNMKLGDDVDLXQIAAES 515
ID ALRR GR DR + P R IL T + +L D VD +++ ++
Sbjct: 572 NHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRELVDLVDWRKVSEKT 629
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 93.5 bits (222), Expect = 1e-19
Identities = 49/158 (31%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
Frame = +3
Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK- 191
P R ++ YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A K
Sbjct: 384 PFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 442
Query: 192 NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371
N ++FIDE DA +R T+ +R L G +S ++++ ATNRP +D
Sbjct: 443 NKGLLLFIDEADAFLCERNSTYMSEAQRSALNALLFRTG-DQSRDIVLVLATNRPGDLDS 501
Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDD 485
A+ R D I+ +P R ++L+++ +GDD
Sbjct: 502 AVT--DRIDEVIEFPLPGEEERFKLLKLYLNKYLMGDD 537
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 88.2 bits (209), Expect = 5e-18
Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Frame = +3
Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK- 191
P R ++ YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A K
Sbjct: 369 PFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGSQAVTKIHQIFDWAKKS 427
Query: 192 NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371
N ++FIDE DA +R T+ +R L G +S ++++ ATNR +D
Sbjct: 428 NKGLLLFIDEADAFLCERNSTYMSEAQRSALNALLFRTG-DQSRDIVLVLATNRRGDLDS 486
Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIH-TKNMKLGDD 485
A+ R D I+ +P R ++L ++ K +K+GD+
Sbjct: 487 AVT--DRIDEVIEFPLPGEEERFKLLNLYLNKYLKMGDN 523
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 84.6 bits (200), Expect = 6e-17
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Frame = +3
Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
P R IL YGPPGTGKT+ AR +A +G + L+ G ++ + L ++ + + + F+ + K+
Sbjct: 397 PFRNILFYGPPGTGKTMAARELARRSGLDYALMTGGDV-APLGAQAVTKIHQLFDWSKKS 455
Query: 195 SPA-IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371
++FIDE DA +R KT+ +R L G +S +++ ATNRP +D
Sbjct: 456 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDS 514
Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIH 458
A+ R D ++ +P R ++L ++
Sbjct: 515 AVA--DRIDETLEFPLPGEEERFKLLNLY 541
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 82.6 bits (195), Expect = 3e-16
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Frame = +3
Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194
P R IL++GPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ K+
Sbjct: 396 PFRNILLHGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGAQAVTKIHELFDWGKKS 454
Query: 195 SPA-IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371
++FIDE DA +R KT+ +R L G +S +++ ATNRP +D
Sbjct: 455 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDS 513
Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIH 458
A+ R D ++ +P R ++L ++
Sbjct: 514 AVA--DRVDEVLEFPLPGEEERFKLLNLY 540
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 61.7 bits (143), Expect = 5e-10
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 173
R IL++GPPGTGKT + +A+A + +N + SK ES + K
Sbjct: 203 RIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKWFSESGKLVAKL 262
Query: 174 FEE-----ADKNSPAIIFIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGMKKSSH 326
F++ + + + IDE++++A R+ E R+V+ LLT MD +K + +
Sbjct: 263 FQKIQEMVEEDGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSAPN 322
Query: 327 VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR 452
VI++ +N +ID A R D + +G P R EILR
Sbjct: 323 VIILTTSNITTAIDVAF--VDRADIKAYVGPPTLHVRYEILR 362
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 56.0 bits (129), Expect = 3e-08
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G RG L+YGPPGTGK+ + A+AN + + +M +S+LR+
Sbjct: 248 VGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVYDLQLASVM------RDSDLRRLL-L 300
Query: 183 ADKNSPAIIFIDELDAIA--------PKREKTHGEVERRI-VSQLLTLMDGMKKS--SHV 329
A +N +I+ I+++D P K GE + + +S LL +DG+ S
Sbjct: 301 ATRNR-SILVIEDIDCAVDLPNRIEQPVEGKNRGESQGPLTLSGLLNFIDGLWSSCGDER 359
Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIG 416
I++ TN + +DPAL R GR D I +G
Sbjct: 360 IIIFTTNHKDRLDPALLRPGRMDMHIYMG 388
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 55.6 bits (128), Expect = 3e-08
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G RG L+YGPPGTGKT + A+AN F I ++ S +++LR+
Sbjct: 240 VGKPWKRGYLLYGPPGTGKTSLVAAIAN---YLKFDIYDLQLASV---REDADLRRLLLG 293
Query: 183 ADKNSPAIIFIDELDA-------IAPKREKTHGEVERRIVSQLLTLMDGMKKS--SHVIV 335
+S I+ ++++D + PK + +S LLT +DG+ S IV
Sbjct: 294 TTNSS--ILLVEDIDCAVDLHTRLQPKTQDDTKGSSMLTLSGLLTCIDGLWSSCGDERIV 351
Query: 336 MAATNRPNSIDPALRRFGRFDREIDIG 416
+ T +DPAL R GR D I +G
Sbjct: 352 IFTTTHKERLDPALLRPGRMDMHIHMG 378
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 53.6 bits (123), Expect = 1e-07
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFF------LINGPEIMSKLAGESESNL 164
+G RG L+YGPPGTGK+ + A+AN F + ++ S L + ++
Sbjct: 239 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELSSIYENAQLKSILLSTTNRSI 298
Query: 165 RKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKS--SHVIVM 338
E+ D +S ++ E D E +G V +S LL +DG+ S I++
Sbjct: 299 -LVIEDIDCSSAEVV-DREADEYQEYEEGYYGRV---TLSGLLNFVDGLWSSFGDERIIV 353
Query: 339 AATNRPNSIDPALRRFGRFDREIDI 413
TN +DPAL R GR D I++
Sbjct: 354 FTTNHKERLDPALLRPGRMDMHINM 378
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 52.8 bits (121), Expect = 2e-07
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
RG L+YGPPGTGK+ + A+AN + I +I S + ++ LR+ + S
Sbjct: 32 RGYLLYGPPGTGKSSLVAAIANFMN---YSIYDLQIQSV---KDDAMLRQILTSTENRS- 84
Query: 201 AIIFIDELDAIAP--------KREKTHGEVERR--------IVSQLLTLMDGMKKS--SH 326
I+ I++LD K E +GE + + +S LL +DG+ S
Sbjct: 85 -ILLIEDLDCSGADTTCRKENKDETEYGENQNKKKKKDPKVTLSGLLNFVDGLWSSCVEE 143
Query: 327 VIVMAATNRPNSIDPALRRFGRFDREI--DIGIPDATGRLEILRIHTKNMKLGDDVD 491
I++ TN +DPAL R GR D I D P +L L + + +L D ++
Sbjct: 144 RIIIFTTNHKEKLDPALLRPGRMDVHILMDYCTPIVFKKLAALYLEIEEHELFDPIE 200
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 52.4 bits (120), Expect = 3e-07
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G RG L+YGPPGTGK+ + A+AN + ++ ++ L +E LR+
Sbjct: 242 VGKAWKRGYLLYGPPGTGKSSLIAAIANHLNFDIYDLD----LTSLNNNAE--LRRLLMS 295
Query: 183 ADKNSPAIIFIDELD-AIAPKREKTHGE----VERRI-VSQLLTLMDGMKKS--SHVIVM 338
S I+ ++++D +I K T E + + + +S LL +DG+ S + I++
Sbjct: 296 TANRS--ILVVEDIDCSIELKDRSTDQENNDPLHKTVTLSGLLNFVDGLWSSCGNERIIV 353
Query: 339 AATNRPNSIDPALRRFGRFDREI 407
TN +DPAL R GR D I
Sbjct: 354 FTTNYREKLDPALLRPGRMDMHI 376
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 52.0 bits (119), Expect = 4e-07
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G RG L+YGPPGTGK+ + A+AN F + +S + E L++
Sbjct: 238 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLE----LSSIYDNGE--LKRVLLS 291
Query: 183 ADKNSPAIIFIDELDAIAPKREK-THGEVERRI-----VSQLLTLMDGMKKS--SHVIVM 338
S I+ I+++D A R++ + + +I +S +L +DG+ S I++
Sbjct: 292 TTNRS--ILVIEDIDCNAEVRDREAENQEDEQIKGKVTLSGILNFIDGLWSSFGDERIIV 349
Query: 339 AATNRPNSIDPALRRFGRFDREIDI 413
TN +DPAL R GR D I++
Sbjct: 350 FTTNHKERLDPALLRPGRMDVHINM 374
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 50.8 bits (116), Expect = 9e-07
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G RG L+YGPPGTGK+ + A+AN F I ++ S + +++LR
Sbjct: 240 VGKAWKRGYLLYGPPGTGKSSLVAAMAN---YLKFDIYDLQLASV---QGDAHLRSLL-- 291
Query: 183 ADKNSPAIIFIDELDA-------IAPKREKTH--GEVE---RRIVSQLLTLMDGMKKS-- 320
N+ +I+ I+++D + P E + G V+ +S LL +DG+ S
Sbjct: 292 LATNNSSILLIEDIDCSVDLPTRLQPPTETSQPLGAVQVSKPLTLSGLLNCIDGLWSSCG 351
Query: 321 SHVIVMAATNRPNSIDPALRRFGRFDREIDIG 416
+ I++ TN +DPAL R GR D I +G
Sbjct: 352 NERIIIFTTNNKEKLDPALLRPGRMDMHIYMG 383
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 50.4 bits (115), Expect = 1e-06
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG RG L+YGPPGTGK+ + A+AN + I E+ A ++ S L+K
Sbjct: 236 IGKAWKRGYLLYGPPGTGKSTMISAMAN---LLNYNIYDLEL---TAVKNNSELKKLLTA 289
Query: 183 ADKNSPAIIFIDELDAIAP------KRE----KTHGEVERR----IVSQLLTLMDGMKKS 320
+S +II I+++D A K+E + +G+ ++ +S LL +DG+ +
Sbjct: 290 T--SSKSIIVIEDIDCSADFTSNRIKKESNSRERYGKEDKDENSVTLSGLLNFIDGIWSA 347
Query: 321 --SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
IV+ TN +DPAL R GR D I++
Sbjct: 348 CGQERIVVFTTNHLEKLDPALIRRGRMDMHIEL 380
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 49.2 bits (112), Expect = 3e-06
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G RG L+YGPPGTGK+ + A+AN F I E+ A + S LR+
Sbjct: 294 VGKAWKRGYLLYGPPGTGKSSLIAAMANHLN---FDIYDLEL---TAVNNNSELRRLLIA 347
Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERR------------IVSQLLTLMDGMKKS-- 320
S I+ ++++D +++T E R +S LL +DG+ S
Sbjct: 348 TANRS--ILIVEDIDCSLELKDRTSDEPPRESDDIEDPRYKKVTLSGLLNFIDGLWSSCG 405
Query: 321 SHVIVMAATNRPNSIDPALRRFGRFDREI 407
I++ TN +D AL R GR D I
Sbjct: 406 DERIIIFTTNYKEKLDAALLRPGRMDMHI 434
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 48.8 bits (111), Expect = 4e-06
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 29/232 (12%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
RG L+YGPPGTGK+ + A+AN + I +I S + LR+ S
Sbjct: 240 RGYLLYGPPGTGKSSMVAAIANH---MKYHIYDLQIQSV---RDDGELREILTSTKNRS- 292
Query: 201 AIIFIDELD--AIAPKREKT----------HGEVERR--------IVSQLLTLMDGMKKS 320
I+ I+++D A A +R ++ GE ++R +S LL +DG+ S
Sbjct: 293 -ILLIEDIDCGADASRRRQSKKKEEDGGEDDGEPQKRKKKFEVGISLSGLLNFVDGLWSS 351
Query: 321 --SHVIVMAATNRPNSIDPALRRFGRFDREI--DIGIPDATGRLEILRIHTKNMKLGDDV 488
I++ TN +DPAL R GR D I D P +L L + T L D +
Sbjct: 352 CGEEKIIIFTTNHKEKLDPALLRPGRMDVHILMDNCTPFVFKKLVALYLKTDEHVLFDPI 411
Query: 489 D--LXQIAAESHGHVGADLASLCSEAALQQIREKMDLIDL---EDDQIDARG 629
+ + ++++ +AS ++ AL+ + E ++ L ED ++ G
Sbjct: 412 EKLILEVSSTPAEVTQQLMASKNADIALKGLAEFLENKKLKKGEDSSVEEEG 463
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 48.0 bits (109), Expect = 7e-06
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG RG L++GPPGTGK+ + A+AN + I E+ A + S LRK
Sbjct: 231 IGKAWKRGYLLHGPPGTGKSTMIAAMANHLN---YSIYDLEL---TAIRNNSELRKLLTA 284
Query: 183 ADKNSPAIIFIDELDA---IAPKREKTHGEVERR--------------IVSQLLTLMDGM 311
+S +II I+++D + KR+K + R +S LL +DG+
Sbjct: 285 T--SSKSIIVIEDIDCSLDLTGKRKKEKNLMTSREDGEQGTEEDKSFVTLSGLLNFIDGI 342
Query: 312 KKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
+ I++ TN +DPAL R GR D I++
Sbjct: 343 WSACGQERIIIFTTNHFEKLDPALIRRGRMDMHIEL 378
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 47.6 bits (108), Expect = 9e-06
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
RG L+YGPPGTGK+ + A+AN G + + E+ ++ S LRK + +S
Sbjct: 239 RGYLLYGPPGTGKSSLIAAMANYLGYDIYDLELTEV------QNNSELRKLLMKT--SSK 290
Query: 201 AIIFIDELDAIAP-----KREKTHGEVE----------------RRIVSQLLTLMDGMKK 317
+II I+++D K +K +G E +S LL DG+
Sbjct: 291 SIIVIEDIDCSISLTKRGKNKKKNGSYEYDPGLTNGSGLEEPGSSVTLSGLLNFTDGLWS 350
Query: 318 --SSHVIVMAATNRPNSIDPALRRFGRFDREIDIG 416
S I + TN +D AL R GR D + +G
Sbjct: 351 CCGSEKIFVFTTNHIEKLDSALMRSGRMDMHVHMG 385
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 47.6 bits (108), Expect = 9e-06
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 20/157 (12%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG RG L+YGPPGTGK+ + A+AN + I E+ A ++ S LRK
Sbjct: 231 IGKAWKRGYLLYGPPGTGKSTMIAAMAN---LLNYSIYDLEL---TAIQNNSELRKILTA 284
Query: 183 ADKNSPAIIFIDELDA---IAPKREKTH---------GEVERR------IVSQLLTLMDG 308
S II I+++D + KR+K G+ + +S LL +DG
Sbjct: 285 TSNKS--IIVIEDIDCSLDLTGKRKKKESNLMIWRKDGDQDNEENKSFVTLSGLLNFIDG 342
Query: 309 MKKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
+ + I++ TN +DPAL R GR D I++
Sbjct: 343 IWSACGQERIIVFTTNHLAKLDPALIRRGRMDMHIEL 379
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 46.4 bits (105), Expect = 2e-05
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G RG L++GPPGTGK+ + A+AN FL + + S L+K
Sbjct: 238 VGKPWKRGYLLFGPPGTGKSTMIAAIAN------FLDYDVYDLELTTVKDNSELKKLL-- 289
Query: 183 ADKNSPAIIFIDELDA---IAPKR-------------EKTHGEVERRI--------VSQL 290
D S +II I+++D + +R EK GE + ++ +S L
Sbjct: 290 LDTTSKSIIVIEDIDCSLDLTGQRKKKKEEDEEEDGEEKKEGEKKPKVDDKQSKVTLSGL 349
Query: 291 LTLMDGMKK--SSHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
L +DG+ S I++ TN + +DPAL R GR D I++
Sbjct: 350 LNSIDGLWSACSGEKIIVFTTNFVDKLDPALIRRGRMDNHIEM 392
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 45.2 bits (102), Expect = 5e-05
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
RG L++GPPGTGK+ + A+AN FL + + + L+K D
Sbjct: 229 RGYLLFGPPGTGKSTMISAIAN------FLEYDVYDLELTTVKDNAELKKLM--LDTKGK 280
Query: 201 AIIFIDELDAI--------------APKREKTHGEVERRI---------VSQLLTLMDGM 311
+I+ I+++D K EK E +R+ +S LL +DG+
Sbjct: 281 SIVVIEDIDCSLELTEHRKKKKEEDEDKEEKKEAENLKRVSGNNESNVTLSGLLNAIDGL 340
Query: 312 KK--SSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDD 485
S I++ TN +++DPAL R GR D I++ + R E ++ KN +
Sbjct: 341 WSACSDEKIIIFTTNFVDNLDPALIRRGRMDYHIEM----SYCRFEAFKVLAKNYLENES 396
Query: 486 VDL 494
DL
Sbjct: 397 HDL 399
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 44.4 bits (100), Expect = 8e-05
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEADKNSP 200
IL+ GP G+GKTL+A+ +A F + + + + GE ES L K AD N
Sbjct: 226 ILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVA 285
Query: 201 A----IIFIDELDAIAPKREKTH--GEVERRIVSQ-LLTLMDG 308
A I++IDE+D I K E + +V V Q LL +++G
Sbjct: 286 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 328
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 44.0 bits (99), Expect = 1e-04
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG RG L+YGPPGTGK+ + A+AN + I E+ S G + +
Sbjct: 231 IGKAWKRGYLLYGPPGTGKSTMIAAMAN---LMKYNIYDLELTS--IGNNWELKKLLIAT 285
Query: 183 ADKNSPAIIFID-ELDAIAPKREK-THGEVERR-----IVSQLLTLMDGMKKS--SHVIV 335
+K+ I ID LD + K G+ E + +S LL +DG+ + I+
Sbjct: 286 TNKSIIVIEDIDCSLDLTGEREVKDLKGDKEGKKSNAVTLSGLLNFIDGIWSACGQERIL 345
Query: 336 MAATNRPNSIDPALRRFGRFDREIDI 413
+ TN +D AL R GR D I++
Sbjct: 346 VFTTNHVGKLDQALIRRGRMDMHIEL 371
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 42.7 bits (96), Expect = 3e-04
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVAN--ETGAFFFLING-------PEIMSKLAGES- 152
+G RG L++GPPGTGK+ + A+AN E + + ++M G+S
Sbjct: 234 VGKPWKRGYLLFGPPGTGKSTMISAMANFLEYDVYDLELTTVKDNSELKKLMLDTKGKSI 293
Query: 153 ------ESNL-----RKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLT 296
+ +L RK +E D++ E + + KRE+ GE E ++ +S LL
Sbjct: 294 VVIEDIDCSLDLTGQRKKKKEEDEDEEEEEKKKEAEKLL-KRER--GERESKVTLSGLLN 350
Query: 297 LMDGMKK--SSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 467
+DG+ S I++ TN + +DPAL R GR D I++ + R E ++ KN
Sbjct: 351 AIDGLWSACSGEKIIVFTTNYLDKLDPALIRRGRMDNHIEM----SYCRFEAFKVLAKN 405
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 42.7 bits (96), Expect = 3e-04
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESNLRKAFEEADKNSP 200
+L+ GP G+GKTL+A+ +A F + + + + + ES L K A+ N
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVAEFNVQ 370
Query: 201 A----IIFIDELDAIAPKREKTH--GEVERRIVSQ-LLTLMDG 308
A I++IDE+D I K E + +V V Q LL L++G
Sbjct: 371 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEG 413
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 42.3 bits (95), Expect = 3e-04
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 19/156 (12%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVAN--ETGAF---FFLINGPEIMSKLAGESESNLR 167
IG RG L++GPPGTGK+ + A+AN E + + + +L E+
Sbjct: 238 IGKAWKRGYLLFGPPGTGKSTMIAAMANLLEYDVYDLELTTVKDNTELRRLLIETSGKSI 297
Query: 168 KAFEEAD----------KNSPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGM 311
E+ D + DE I + +K GE + + +S LL +DG+
Sbjct: 298 IVIEDIDCSLDLTGQRKQKKDEEEDEDETSPIEKQMKKDQGENKGSKVTLSGLLNFIDGL 357
Query: 312 KKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
+ I++ TN + +DPAL R GR D+ I++
Sbjct: 358 WSACGGERIIVFTTNFIDKLDPALIRKGRMDKHIEM 393
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 42.3 bits (95), Expect = 3e-04
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
RG L+YGPPGTGK+ + A+AN + + E+ +S S LRK + +S
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLRYDIYDLELTEV------KSNSELRKLLMKT--SSK 289
Query: 201 AIIFIDELDAI-----APKREKTH-----------------GEVERRIVSQLLTLMDGMK 314
+II I+++D K++ T G+ +S LL DG+
Sbjct: 290 SIIVIEDIDCSINLTNRNKKQSTGSYNEPEMLTGSGLGDDLGDGNTITLSGLLNFTDGLW 349
Query: 315 K--SSHVIVMAATNRPNSIDPALRRFGRFDREI 407
S I + TN +DPAL R GR D I
Sbjct: 350 SCCGSERIFVFTTNHIEKLDPALLRSGRMDMHI 382
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
RG L+YGPPGTGK+ + A+AN G + + E+ S S LRK + +S
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HSNSELRKLLMKT--SSK 289
Query: 201 AIIFIDELD 227
+II I+++D
Sbjct: 290 SIIVIEDID 298
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 41.9 bits (94), Expect = 4e-04
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
IG RG L++GPPGTGK+ + A+AN FL + + ++LR+ E
Sbjct: 235 IGKAWKRGYLLFGPPGTGKSTMIAAMAN------FLEYDVYDLELTTVKDNTHLRRLLIE 288
Query: 183 ADKNSPAIIFIDELDA---IAPKREKTHGE---------VERRI--------------VS 284
S II I+++D + +R+K E +E+++ +S
Sbjct: 289 TSAKS--IIVIEDIDCSLNLTGQRKKKEEEEEDGDDKNTIEKKMMMKNEGENKESKVTLS 346
Query: 285 QLLTLMDGMKKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413
LL +DG+ + I++ TN + +DPAL R GR D+ I++
Sbjct: 347 GLLNFIDGLWSACGGERIIVFTTNFVDKLDPALIRKGRMDKHIEM 391
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 41.5 bits (93), Expect = 6e-04
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+G R +YGPPGTGK+ + A+AN + + ++ + G+++ LR
Sbjct: 215 VGKAWKRSYFLYGPPGTGKSSLVAAMANYLKFDIYDLQ----LANVQGDAQ--LRSLL-- 266
Query: 183 ADKNSPAIIFIDELDAIA--PKR----EKTHGEVERR---IVSQLLTLMDGMKKS--SHV 329
N+ +I+ ++++D P R T G + +S LL +DG+ S
Sbjct: 267 LATNNSSILLVEDIDCSVDLPTRLQPATTTLGAPKGSTPLTLSGLLNCIDGLWSSCGDER 326
Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIG 416
IV+ TN +DPAL R G D I +G
Sbjct: 327 IVIFTTNNKEVLDPALLRPGCMDMHIYLG 355
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFL-------INGPEIMSKLAGESESN 161
IG + P + G PGTGKT++AR + L + +++ + G +
Sbjct: 240 IGTRRPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPK 299
Query: 162 LRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMA 341
R+ +EA+ I+F+DE + P ++ + + +++++MD K V++ A
Sbjct: 300 TRRKIQEAE---GGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGK---IVVIFA 353
Query: 342 ATNRP 356
+ P
Sbjct: 354 GYSEP 358
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFE----EAD 188
+L+ GP G+GKTL+A+ +A F + + + + GE ES L K + +
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVVSGCNVE 324
Query: 189 KNSPAIIFIDELDAIAPKREKTHG--EVERRIVSQ-LLTLMDG 308
+ I++IDE+D + K ++G +V V Q LL L++G
Sbjct: 325 EAQRGIVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEG 367
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAFEEA 185
+ +L+ GPPGTGKT +A ++ E G+ F + G E+ S ++E N R+A
Sbjct: 67 KALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLR 126
Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329
K + ++ E+ ++P+ ++ + +S ++ + +K + H+
Sbjct: 127 IKETKE-VYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHL 173
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA 185
R IL+ G PGTGKT IA +A G F +I G EI S ++E+ L ++F +A
Sbjct: 67 RAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEA-LTQSFRKA 122
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA 185
R IL+ G PGTGK IA +A G F +I G EI S ++E+ L +AF +A
Sbjct: 67 RAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEA-LTQAFRKA 122
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVAN 86
+G RG L+YGPPGTGK+ + A+AN
Sbjct: 248 VGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 36.3 bits (80), Expect = 0.022
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAG 146
+G + + G PG GKT IA +A +G I G ++++ K G
Sbjct: 290 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRG 349
Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAI 233
E E L+K EE ++ I+FIDE+ +
Sbjct: 350 EFEERLKKLMEEIRQSDEIILFIDEVHTL 378
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 36.3 bits (80), Expect = 0.022
Identities = 35/137 (25%), Positives = 60/137 (43%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
R L+YGP GTGK+ A+AN + I+ +SK+ +S+ +
Sbjct: 232 RSYLLYGPSGTGKSSFVAAMANFLDYDVYDID----LSKVVDDSDLKMLL----LQTRGK 283
Query: 201 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALR 380
++I I++LD K+ I++ +++ ++V T + IDPA+
Sbjct: 284 SVIVIEDLD--RHLSTKSTAVNLSGILNFTDSILSSCTADERIMVFTMTGK-EQIDPAML 340
Query: 381 RFGRFDREIDIGIPDAT 431
R GR D I + D T
Sbjct: 341 RPGRVDVHIHFPLCDFT 357
>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
(CPK9) identical to calmodulin-domain protein kinase
CDPK isoform 9 [Arabidopsis thaliana]
gi|1399265|gb|AAB03242
Length = 541
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +3
Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326
ES NL KAF+ DK+S I IDEL++ + + ++S + + DG
Sbjct: 464 ESNENLYKAFQHFDKDSSGYITIDELESALKEYGMGDDATIKEVLSDVDSDNDGRINYEE 523
Query: 327 VIVMAATNRPNSIDPAL 377
M + P P L
Sbjct: 524 FCAMMRSGNPQQQQPRL 540
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 35.1 bits (77), Expect = 0.050
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAF 176
+ G PG GKT IA +A +G I G +++ K GE E L+K
Sbjct: 321 LIGEPGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLM 380
Query: 177 EEADKNSPAIIFIDELDAI 233
EE ++ I+FIDE+ +
Sbjct: 381 EEIRQSDEIILFIDEVHTL 399
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 34.7 bits (76), Expect = 0.066
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETG 95
+ V R +L+YGP G+GK+ + R +A+E+G
Sbjct: 348 LAVSQKRPVLLYGPSGSGKSALIRKLADESG 378
>At2g41860.2 68415.m05174 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 530
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 150 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDG 308
++ +L+KAF DKN I I+EL DA+A + T EV I+ + T DG
Sbjct: 428 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAIILDVDTNKDG 481
>At2g41860.1 68415.m05173 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 425
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 150 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDG 308
++ +L+KAF DKN I I+EL DA+A + T EV I+ + T DG
Sbjct: 323 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAIILDVDTNKDG 376
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa
subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANE 89
+L YGPPGTGKT A A+A++
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQ 53
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANE 89
+L YGPPGTGKT A A+A++
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQ 65
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185
G PP +++ GPPG GK+L+ +++ E F N PE+ + R F E
Sbjct: 79 GEAPPFVVVVQGPPGVGKSLVIKSLVKE----FTKQNVPEVRGPITIVQGKQRRFQFVEC 134
Query: 186 DKNSPAII 209
+ A++
Sbjct: 135 PNDINAMV 142
>At4g21880.1 68417.m03164 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 845
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +3
Query: 288 LLTLMDGMKKSSHVIVMAATNRPNS-IDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 464
L L DG++ S++I AT PNS ++ A+ +F + E+DI +P +T ++
Sbjct: 285 LSILQDGVETVSNLIFSYATCIPNSTVEDAIFKFNKLHEELDI-VPSSTSYENLVSYLCG 343
Query: 465 NMKLGDDVDLXQIAAESHGHVGADLASLCSEAALQQIRE 581
+ ++ +D+ + E+ + A++ + A++QI E
Sbjct: 344 SNEVVTALDIVENMCEAGLVISANILHSLLQ-AIEQILE 381
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANET 92
+KP R L+ GPPG+GK+ + +A++ +T
Sbjct: 169 IKPGRLTLLLGPPGSGKSTLLKALSGKT 196
>At2g39730.3 68415.m04879 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 441
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 185
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 155 IKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214
Query: 186 ---DKNSPAIIFIDELDA 230
K +FI++LDA
Sbjct: 215 DLIKKGKMCCLFINDLDA 232
>At2g39730.2 68415.m04878 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 446
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 185
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 155 IKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214
Query: 186 ---DKNSPAIIFIDELDA 230
K +FI++LDA
Sbjct: 215 DLIKKGKMCCLFINDLDA 232
>At2g39730.1 68415.m04877 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 474
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 185
+K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 155 IKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214
Query: 186 ---DKNSPAIIFIDELDA 230
K +FI++LDA
Sbjct: 215 DLIKKGKMCCLFINDLDA 232
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANET 92
I+ +GPPGTGKT IA+++ N +
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSS 161
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110
R I ++GPPG GKT IAR V N+ F L
Sbjct: 258 RIIGIWGPPGIGKTTIARVVYNQLSHSFQL 287
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 31.9 bits (69), Expect = 0.47
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVAN--ETGAFFFLINGPEIMSKLAGESES------- 158
G + I + GPPG GKT I R++A + F F + G ++++ G ++
Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHCQTYVGAMPG 495
Query: 159 NLRKAFEEADKNSPAIIFIDELDAI 233
+ + + +P I+F DE+D +
Sbjct: 496 KMVQCLKSVGTANPLILF-DEIDKL 519
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANE 89
+L+YGPPGTGKT AVA +
Sbjct: 75 LLLYGPPGTGKTSTILAVARK 95
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89
VKP R L+ GPP +GKT + +A+A +
Sbjct: 198 VKPSRMTLLLGPPSSGKTTLLQALAGK 224
>At4g27420.1 68417.m03941 ABC transporter family protein
D.melanogaster P element CaSpeR-1 gene (white
protein),PID:g870996
Length = 639
Score = 31.5 bits (68), Expect = 0.62
Identities = 31/107 (28%), Positives = 44/107 (41%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188
VKP + M GP G+GKT + A+ G E KL G N K +A
Sbjct: 75 VKPGEILAMLGPSGSGKTSLLTALGGRVG---------EGKGKLTGNISYN-NKPLSKAV 124
Query: 189 KNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329
K + F+ + DA+ P T E + + LL L + KK +
Sbjct: 125 KRTTG--FVTQDDALYPNLTVT----ETLVFTALLRLPNSFKKQEKI 165
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89
+KP R L+ GPP +GKT + +A+A +
Sbjct: 196 IKPSRMTLLLGPPSSGKTTLLQALAGK 222
>At1g73110.1 68414.m08453 ribulose bisphosphate
carboxylase/oxygenase activase, putative / RuBisCO
activase, putative similar to ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA) [Oryza sativa] SWISS-PROT:P93431
Length = 432
Score = 31.5 bits (68), Expect = 0.62
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182
+ +K P + ++G G GKT + G +++ E+ S AGE +R +
Sbjct: 159 LNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRT 218
Query: 183 A-----DKNSPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLTLMDGMKKSS 323
A ++ +++ I+++DA + +T V +I V L+ L D + S
Sbjct: 219 ASQVIQNQGKMSVLMINDIDAGLGRFGETQMTVNNQIVVGTLMNLADNPTRVS 271
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.5 bits (58), Expect(2) = 0.76
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVAN 86
R + ++GP G GKT IARA+ N
Sbjct: 203 RMVGIWGPTGIGKTTIARALFN 224
Score = 22.2 bits (45), Expect(2) = 0.76
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 123 EIMSKLAGES--ESNLRKAFEEADKNSPAIIFIDELD 227
+++SKL + E N A +E + +IFID+LD
Sbjct: 265 KLLSKLLDKKNLEINHLDAVKERLRQMKVLIFIDDLD 301
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFF 107
G + I + GPPG GKT I R++A FF
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKFF 486
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89
V+P R L+ GPPG GKT + +A++ +
Sbjct: 164 VRPGRMTLLLGPPGCGKTTLLQALSGK 190
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 469 MFLVCMRRISRRPVASGMPMSISRSNRPKRRSAGSMEFGRFVAAITITW 323
+ L CMR+ S +P S+R R AGS RF+ + + W
Sbjct: 174 LVLACMRKTSNPDELPSLPNQNRSSSRSSRLMAGSRGDSRFLWLVMVIW 222
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89
+KP R L+ GPPG+GK+ + A+A +
Sbjct: 183 IKPGRMTLLLGPPGSGKSTLLLALAGK 209
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89
VKP R L+ GPP +GKT + A+A +
Sbjct: 192 VKPSRMTLLLGPPSSGKTTLLLALAGK 218
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83
V+P R L+ GPPG GKT + +A++
Sbjct: 161 VRPGRMTLLLGPPGCGKTTLLQALS 185
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110
R I ++GPPG GKT IAR + N+ F L
Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQVSDRFQL 319
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110
R I ++GPPG GKT IAR + N+ F L
Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQVSDRFQL 319
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110
R I ++GPPG GKT IAR + N+ F L
Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQVSDRFQL 319
>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1194
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110
R I ++GPPG GKT IAR + N+ F L
Sbjct: 294 RMIGIWGPPGIGKTTIARFLFNQVSDRFQL 323
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89
+KP R L+ GPP +GKT + A+A +
Sbjct: 170 IKPSRMTLLLGPPSSGKTTLLLALAGK 196
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANE 89
++GPPG GKT IAR++ N+
Sbjct: 263 IWGPPGVGKTTIARSLYNQ 281
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETG 95
++P R L+ GPP +GKT + A+A G
Sbjct: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETG 95
V+ +L+ GPPG GKT + R VA G
Sbjct: 194 VQDGNSLLLIGPPGVGKTTMIREVARMLG 222
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89
VKP R L+ GPP +GKT + A+A +
Sbjct: 177 VKPGRMALLLGPPSSGKTTLLLALAGK 203
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS 197
+ +L+ G PG GKT A+ V+ G +N S G++ SN+ K ++ NS
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNA----SDSRGKANSNIAKGIGGSNANS 448
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110
R I + GPPG GKT IARA+ ++ F L
Sbjct: 215 RMIGIVGPPGIGKTTIARALRDQISENFQL 244
>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1215
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110
R I ++GPPG GKT I R + N+ + F L
Sbjct: 252 RMIGIWGPPGIGKTTIVRFLYNQLSSSFEL 281
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89
+KP R L+ GPP +GKT + A+A +
Sbjct: 194 IKPGRMTLLLGPPSSGKTTLLLALAGK 220
>At5g12180.1 68418.m01429 calcium-dependent protein kinase, putative
/ CDPK, putative
Length = 528
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +3
Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326
+ E +L AF+ DK++ I ++EL+ + G + I+S++ DG
Sbjct: 446 DREEHLYSAFQHFDKDNSGYITMEELEQALREFGMNDGRDIKEIISEVDGDNDGRINYDE 505
Query: 327 VIVMAATNRPNSIDPALRR 383
+ M P+ I P RR
Sbjct: 506 FVAMMRKGNPDPI-PKKRR 523
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110
R I ++GPPG GKT IAR + ++ F L
Sbjct: 224 RMIGIWGPPGIGKTTIARFLLSQVSKSFQL 253
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 108 LINGPEIMSKLAGESESNLRKAFEEADKNS--PAIIFIDELDAIAPKREKTHGEVERRI 278
+I G ++ S + E+E +RK+ E D +S P ++F+ ++ AI K G R+
Sbjct: 367 IIGGDDVDSSVLAEAEL-VRKSIEACDSSSDSPCVVFVSKMFAIPMKMIPQDGNHRERM 424
>At1g66400.1 68414.m07541 calmodulin-related protein, putative
similar to calmodulin-related protein 2, touch-induced
from SP:P25070 [Arabidopsis thaliana]; contains Pfam
profile: PF00036 EF hand (4 copies)
Length = 157
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Frame = +3
Query: 150 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326
S +++K F+ DKN+ I IDEL D I E + ++ + +G
Sbjct: 12 SMEDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDE 71
Query: 327 VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGD 482
+ + + +S + A+R D+ D GR+ +H+ LG+
Sbjct: 72 FVALFQISDQSSNNSAIR---DLKEAFDLYDLDRNGRISANELHSVMKNLGE 120
>At1g61950.1 68414.m06988 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase GI:3283996 from [Nicotiana tabacum]; contains
protein kinase domain, Pfam:PF00069; contains EF hand
domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 551
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +3
Query: 57 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIA 236
K L+ A + G ++ M++ E E NL KAF+ DK++ I EL+
Sbjct: 442 KQLLEDADVDGNGTIDYIEFISATMNRFRVEREDNLFKAFQHFDKDNSGFISRQELETAM 501
Query: 237 PKREKTHGEVERRIVSQLLTLMDG 308
+ + + I+S++ DG
Sbjct: 502 KEYNMGDDIMIKEIISEVDADNDG 525
>At1g50700.1 68414.m05701 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 9 [Arabidopsis thaliana]
gi|1399265|gb|AAB03242
Length = 521
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +3
Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326
ES N+ KAF+ DK+ I DEL+A + + I+S + DG
Sbjct: 446 ESNENVYKAFQHFDKDGSGYITTDELEAALKEYGMGDDATIKEILSDVDADNDGRINYDE 505
Query: 327 VIVMAATNRP 356
M + P
Sbjct: 506 FCAMMRSGNP 515
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE-SNLRKAFEEADKNSPA 203
+L+ G PG GKT +A A G IN + S A E+ ++ + + P
Sbjct: 348 LLLCGAPGLGKTTLAHIAAKHCGYRVVEINASDERSASAIETRILDVVQMNSVTADSRPK 407
Query: 204 IIFIDELD 227
+ IDE+D
Sbjct: 408 CLVIDEID 415
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANETGAFFFL 110
+YGP G GKT IARA+ + + F L
Sbjct: 215 IYGPAGIGKTTIARALHSRLSSSFQL 240
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Frame = +3
Query: 30 LMYGPPGTGKTLIARAVA---NETGAFFFLINGPEIMS----------KLAGESESNLRK 170
++ G G GKT IA +A E A FL+ IMS K GE E+ +
Sbjct: 313 ILLGEAGVGKTAIAEGLAISIAEASAPGFLLT-KRIMSLDIGLLMAGAKERGELEARVTA 371
Query: 171 AFEEADKNSPAIIFIDELDAI 233
E K+ I+FIDE+ +
Sbjct: 372 LISEVKKSGKVILFIDEVHTL 392
>At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Non-consensus TT donor splice site at exon 1
Length = 1104
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANETGAFFFL 110
++GP G GKT IARA+ N+ F L
Sbjct: 211 IWGPAGIGKTTIARALFNQLSTGFRL 236
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83
++P R L+ GPPG GKT + A++
Sbjct: 159 IRPKRMTLLLGPPGCGKTTLLLALS 183
>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1095
Score = 29.1 bits (62), Expect = 3.3
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLAGESESNLRKAFEEADKNSP 200
++GP G GKT IARA+ N+ F F+ N E + AG + L+ ++
Sbjct: 210 IWGPAGVGKTTIARALYNQYHENFNLSIFMENVRESYGE-AGLDDYGLKLHLQQR----- 263
Query: 201 AIIFIDELDAIAPKREKTHGEVERRIVSQ-LLTLMDGMKKSSHVIVMAATNR 353
F+ +L R + G +E R+ SQ +L ++D + + +A N+
Sbjct: 264 ---FLSKLLDQKDLRVRHLGAIEERLKSQKVLIILDDVDNIEQLKALAKENQ 312
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83
+ P R L+ GPPG GKT + +A++
Sbjct: 162 ISPGRLTLLLGPPGCGKTTLLKALS 186
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANETGAFF 104
++GP G GKT IARA+ N+ F
Sbjct: 210 IWGPAGIGKTTIARALYNQLSTNF 233
>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1188
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLAGES 152
IG R I++YG G GKT +A+ NE F FL N E K G +
Sbjct: 204 IGSDGVRVIVIYGMGGIGKTTLAKVAFNEFSHLFEGSSFLENFREYSKKPEGRT 257
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 21 RGIL-MYGPPGTGKTLIARAVANE 89
RGI+ +YGP G GKT + +++ NE
Sbjct: 175 RGIIGVYGPGGVGKTTLMQSINNE 198
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 3 IGVKPPRGILMYGPPGTGKT----LIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 170
+G+ +L+ GPPGTGKT I A+ + T A + ++ + +++
Sbjct: 268 VGLSRKSFVLIQGPPGTGKTQTILSILGAIMHATPA---RVQSKGTDHEVKRGIQMTIQE 324
Query: 171 AFEEADKNSPAIIFIDELDAIAPK 242
+ + SP I+ ++ DAI P+
Sbjct: 325 KYNHWGRASPWILGVNPRDAIMPE 348
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83
+KP R L+ GPP GKT + +A++
Sbjct: 197 IKPGRLTLLLGPPSCGKTTLLKALS 221
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIARAVAN--ETGAFFFLINGPEIMSKLAGESES------- 158
G + I + GP G GKT I R++A + F F + G ++++ G +
Sbjct: 445 GTSQGKIICLSGPTGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHRRTYIGAMPG 504
Query: 159 NLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 305
+ + + +P ++ IDE+D + + HG+ S +L L+D
Sbjct: 505 KMVQCLKNVGTENP-LVLIDEIDKLGVRGH--HGDP----ASAMLELLD 546
>At2g34440.1 68415.m04225 MADS-box family protein similar to
SP|Q9XGJ4 MADS box protein GGM13 {Gnetum gnemon};
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 172
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 108 LINGPEIMSKLAGE-SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI 278
L+N K GE S+ L A +E K S + +DEL+ + + HG +E ++
Sbjct: 100 LLNQEVEAEKERGEKSQEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQV 157
>At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1068
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANETGAFF 104
++GP G GKT IAR + N+ + F
Sbjct: 212 IWGPAGIGKTTIARTLFNKISSIF 235
>At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1068
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANETGAFF 104
++GP G GKT IAR + N+ + F
Sbjct: 212 IWGPAGIGKTTIARTLFNKISSIF 235
>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1085
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 33 MYGPPGTGKTLIARAVANETGAFFFL 110
++GP G GK+ IARA+ N+ + F L
Sbjct: 212 IWGPAGIGKSTIARALYNQLSSSFQL 237
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLI 68
V P +G+ +YG GTGKT++
Sbjct: 130 VSPVKGLYLYGGVGTGKTML 149
>At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 429
Score = 28.3 bits (60), Expect = 5.8
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Frame = +3
Query: 39 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFID 218
GP G GK+ IARA+ N + F L M L S+SN + E + K S +
Sbjct: 227 GPAGIGKSTIARALHNLLSSSFHL---SCFMENLI--SQSNPHSSLEYSSKLSLQEQLLS 281
Query: 219 ELDAIAPKREKTHGEVERRIVSQ-LLTLMDGMKKSSHVIVMA 341
++ R + G ++ R+ Q +L ++D + + V+A
Sbjct: 282 QVLNEKDIRIRHLGAIQERLHDQRVLIILDDVTSLEQLEVLA 323
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 27 ILMYGPPGTGKTLIARAVANE 89
+++ GPPGTGKT A+A+E
Sbjct: 51 LILSGPPGTGKTTSILALAHE 71
>At1g05990.1 68414.m00627 calcium-binding protein, putative strong
similarity to calcium-binding protein [Lotus japonicus]
GI:18413495; contains INTERPRO:IPR002048 calcium-binding
EF-hand domain
Length = 150
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAI 233
E E ++++AF D+N I +DEL A+
Sbjct: 75 EEEEDMKEAFNVFDQNGDGFITVDELKAV 103
>At5g51430.1 68418.m06376 conserved oligomeric Golgi complex
component-related / COG complex component-related
contains weak similarity to Conserved oligomeric Golgi
complex component 7 (Swiss-Prot:P83436) [Homo sapiens]
Length = 836
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 498 QIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDARGS 632
QIA+E +GA L A L+ R D++ L DD + RGS
Sbjct: 44 QIASEE---IGASLEEQSGGALLRVPRATRDVLRLRDDAVSLRGS 85
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 21 RGILMYGPPGTGKTLIARAVAN 86
R I ++G PG GKT +A+AV N
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFN 211
>At5g07800.1 68418.m00894 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase 2 (FMO2) from Homo
sapiens [GI:1834493]; contains Pfam profile: PF00743
Flavin-binding monooxygenase-like
Length = 460
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 719 FPPTVSRNADXDDFVIAYRKLSMETARELRTSGVNLIVLEVNE 591
F SR+ VI + +ARELR G ++VLE NE
Sbjct: 4 FTSEASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNE 46
>At3g57530.1 68416.m06406 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 538
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 150 SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329
++ +L+KAF D+N+ I I+EL T EV I+ + T DG
Sbjct: 437 NDEHLKKAFAFFDQNNNGYIEIEELREALSDELGTSEEVVDAIIRDVDTDKDGRISYEEF 496
Query: 330 IVMAAT 347
+ M T
Sbjct: 497 VTMMKT 502
>At3g25620.1 68416.m03189 ABC transporter family protein similar to
GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol.
6 (4), 343-356 (1997))
Length = 467
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83
VKP + M GP G+GKT + A+A
Sbjct: 107 VKPGELLAMLGPSGSGKTTLVTALA 131
>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
repair protein recA, chloroplast [Precursor] SP:Q39199
from [Arabidopsis thaliana] ;contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 439
Score = 27.9 bits (59), Expect = 7.6
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 26/127 (20%)
Frame = +3
Query: 6 GVKPPRGILMYGPPGTGKTLIA-RAVA--NETGAFFFLINGPEIM----SKLAGESESNL 164
G+ R + +YGP +GKT +A A+A + G L++ SK G NL
Sbjct: 131 GLPKGRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENL 190
Query: 165 --------RKAFEEADK--NSPAI--IFIDELDAIAPKREKTHGEV-------ERRIVSQ 287
A E AD+ S A+ I +D + A+ P+ E GE+ + R++SQ
Sbjct: 191 IVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAE-IEGEIGMQQMGLQARLMSQ 249
Query: 288 LLTLMDG 308
L M G
Sbjct: 250 ALRKMSG 256
>At1g21550.1 68414.m02695 calcium-binding protein, putative contains
similarity to calcium-binding protein GB:CAB63264
GI:6580549 from [Lotus japonicus]
Length = 155
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 156 SNLRKAFEEADKNSPAIIFIDELDAIAPK---REKTHGEVERRIVSQLLTL 299
++LR+ F+ DKN ++ +DEL I K E T E+E + Q L L
Sbjct: 9 NDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDL 59
>At1g13280.1 68414.m01542 allene oxide cyclase family protein
similar to ERD12 [GI:15320414], allene oxide cyclase
GI:8977961 from [Lycopersicon esculentum]; contains Pfam
profile PF06351: Allene oxide cyclase
Length = 254
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 54 GKTLIARAVANETGAFFFLI--NGPEIMSKLAGESESNLRKAFEEADKNSPAII 209
G + AR+ + TG FF I + S+ E N+ + F E D+NSPA++
Sbjct: 48 GLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYE-FNEGDRNSPAVL 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,675
Number of Sequences: 28952
Number of extensions: 297275
Number of successful extensions: 1454
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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