BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0633 (750 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 376 e-104 At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 376 e-104 At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 375 e-104 At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 210 1e-54 At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 188 5e-48 At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 188 5e-48 At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 183 1e-46 At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 182 2e-46 At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 182 3e-46 At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 181 5e-46 At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 180 7e-46 At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 180 9e-46 At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 178 3e-45 At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 178 4e-45 At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 177 6e-45 At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 175 2e-44 At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 174 5e-44 At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 171 4e-43 At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 170 7e-43 At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 170 1e-42 At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 169 1e-42 At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 169 1e-42 At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 169 2e-42 At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 168 3e-42 At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 167 7e-42 At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 166 1e-41 At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 166 1e-41 At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 166 2e-41 At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 166 2e-41 At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 166 2e-41 At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 165 3e-41 At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 163 1e-40 At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 163 1e-40 At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 160 1e-39 At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 156 1e-38 At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 156 1e-38 At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 156 2e-38 At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 155 2e-38 At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 154 5e-38 At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 152 2e-37 At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 151 4e-37 At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 150 8e-37 At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 149 3e-36 At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 147 8e-36 At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 145 2e-35 At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 145 2e-35 At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 142 2e-34 At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 141 4e-34 At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 140 7e-34 At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 138 4e-33 At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 138 4e-33 At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 135 3e-32 At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 134 4e-32 At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 126 2e-29 At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 125 4e-29 At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 121 6e-28 At3g04340.1 68416.m00459 FtsH protease family protein similar to... 97 1e-20 At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 93 1e-19 At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 88 5e-18 At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 85 6e-17 At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 83 3e-16 At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 62 5e-10 At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 56 3e-08 At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 56 3e-08 At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 54 1e-07 At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 53 2e-07 At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 52 3e-07 At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 52 4e-07 At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 51 9e-07 At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 50 1e-06 At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 49 3e-06 At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 49 4e-06 At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 48 7e-06 At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 48 9e-06 At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 48 9e-06 At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 46 2e-05 At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 45 5e-05 At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 44 8e-05 At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 44 1e-04 At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 43 3e-04 At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 43 3e-04 At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 42 3e-04 At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 42 3e-04 At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 42 4e-04 At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 42 4e-04 At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 42 6e-04 At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 41 8e-04 At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 40 0.001 At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 38 0.007 At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 38 0.009 At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 37 0.012 At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 37 0.016 At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 36 0.022 At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 36 0.022 At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor... 36 0.029 At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 35 0.050 At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 35 0.066 At2g41860.2 68415.m05174 calcium-dependent protein kinase, putat... 34 0.12 At2g41860.1 68415.m05173 calcium-dependent protein kinase, putat... 34 0.12 At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 33 0.15 At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 33 0.15 At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 33 0.20 At4g21880.1 68417.m03164 pentatricopeptide (PPR) repeat-containi... 33 0.27 At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 33 0.27 At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge... 33 0.27 At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge... 33 0.27 At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge... 33 0.27 At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 32 0.35 At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 32 0.47 At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 32 0.47 At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 32 0.47 At1g66950.1 68414.m07612 ABC transporter family protein similar ... 32 0.47 At4g27420.1 68417.m03941 ABC transporter family protein D.melano... 31 0.62 At2g36380.1 68415.m04464 ABC transporter family protein related ... 31 0.62 At1g73110.1 68414.m08453 ribulose bisphosphate carboxylase/oxyge... 31 0.62 At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 0.76 At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 31 0.82 At4g15230.1 68417.m02333 ABC transporter family protein similar ... 31 1.1 At3g49210.1 68416.m05378 expressed protein 31 1.1 At2g29940.1 68415.m03642 ABC transporter family protein similar ... 31 1.1 At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 31 1.1 At4g15215.1 68417.m02332 ABC transporter family protein similar ... 30 1.4 At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 30 1.4 At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 30 1.4 At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 30 1.4 At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR... 30 1.4 At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.4 At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 30 1.4 At2g26910.1 68415.m03228 ABC transporter family protein similar ... 30 1.4 At1g73170.1 68414.m08466 expressed protein 30 1.4 At1g15520.1 68414.m01867 ABC transporter family protein similar ... 30 1.4 At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 30 1.9 At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 30 1.9 At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR... 30 1.9 At1g59870.1 68414.m06745 ABC transporter family protein similar ... 30 1.9 At5g12180.1 68418.m01429 calcium-dependent protein kinase, putat... 29 2.5 At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 29 2.5 At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 29 2.5 At1g66400.1 68414.m07541 calmodulin-related protein, putative si... 29 2.5 At1g61950.1 68414.m06988 calcium-dependent protein kinase, putat... 29 2.5 At1g50700.1 68414.m05701 calcium-dependent protein kinase, putat... 29 2.5 At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 2.5 At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 29 3.3 At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 29 3.3 At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR... 29 3.3 At4g15236.1 68417.m02335 ABC transporter family protein similar ... 29 3.3 At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 29 3.3 At2g37280.1 68415.m04573 ABC transporter family protein similar ... 29 3.3 At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 29 4.4 At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR... 29 4.4 At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 29 4.4 At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 29 4.4 At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 4.4 At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 29 4.4 At2g34440.1 68415.m04225 MADS-box family protein similar to SP|Q... 29 4.4 At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR... 28 5.8 At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR... 28 5.8 At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR... 28 5.8 At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 28 5.8 At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS cla... 28 5.8 At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 28 5.8 At1g05990.1 68414.m00627 calcium-binding protein, putative stron... 28 5.8 At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp... 28 7.6 At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 28 7.6 At5g07800.1 68418.m00894 flavin-containing monooxygenase family ... 28 7.6 At3g57530.1 68416.m06406 calcium-dependent protein kinase, putat... 28 7.6 At3g25620.1 68416.m03189 ABC transporter family protein similar ... 28 7.6 At1g79050.1 68414.m09217 DNA repair protein recA identical to DN... 28 7.6 At1g21550.1 68414.m02695 calcium-binding protein, putative conta... 28 7.6 At1g13280.1 68414.m01542 allene oxide cyclase family protein sim... 28 7.6 >At5g03340.1 68418.m00286 cell division cycle protein 48, putative / CDC48, putative very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain; supporting cDNA gi|26449351|dbj|AK117125.1| Length = 810 Score = 376 bits (924), Expect = e-104 Identities = 186/251 (74%), Positives = 212/251 (84%), Gaps = 2/251 (0%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEE Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362 A+KN+P+IIFIDE+D+IAPKREKT+GEVERRIVSQLLTLMDG+K +HVIVM ATNRPNS Sbjct: 296 AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 355 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 IDPALRRFGRFDREIDIG+PD GRLE+LRIHTKNMKL +DVDL +I+ ++HG+VGADLA Sbjct: 356 IDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLA 415 Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDAR--GSQFSGCLHG*LPVRNDEIVXVGVT*DSGG 716 +LC+EAALQ IREKMD+IDLEDD IDA S H + N ++ Sbjct: 416 ALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVSNEHFHTALGNSN---PSALRETVV 472 Query: 717 EVPNVTWTDIG 749 EVPNV+W DIG Sbjct: 473 EVPNVSWEDIG 483 Score = 175 bits (427), Expect = 2e-44 Identities = 86/206 (41%), Positives = 132/206 (64%), Gaps = 3/206 (1%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185 G+ P +G+L YGPPG GKTL+A+A+ANE A F + GPE+++ GESE+N+R+ F++A Sbjct: 510 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569 Query: 186 DKNSPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356 +++P ++F DELD+IA +R + G+ R+++QLLT MDGM V ++ ATNRP Sbjct: 570 RQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 629 Query: 357 NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536 + ID AL R GR D+ I I +PD RL I + + + DVD+ +A + G GAD Sbjct: 630 DIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGAD 689 Query: 537 LASLCSEAALQQIREKMDLIDLEDDQ 614 + +C A IRE ++ D+E+++ Sbjct: 690 ITEICQRACKYAIRENIEK-DIENER 714 Score = 36.3 bits (80), Expect = 0.022 Identities = 17/29 (58%), Positives = 23/29 (79%) Frame = +1 Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711 E+LNS+AVS ++F A+ S+ SALRETV Sbjct: 443 EILNSMAVSNEHFHTALGNSNPSALRETV 471 >At3g53230.1 68416.m05865 cell division cycle protein 48, putative / CDC48, putative very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain Length = 815 Score = 376 bits (924), Expect = e-104 Identities = 184/251 (73%), Positives = 213/251 (84%), Gaps = 2/251 (0%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEE Sbjct: 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 296 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362 A+KN+P+IIFIDE+D+IAPKREKTHGEVERRIVSQLLTLMDG+K +HVIVM ATNRPNS Sbjct: 297 AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 356 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 IDPALRRFGRFDREIDIG+PD GRLE+LRIHTKNMKL +DVDL +++ ++HG+VGADLA Sbjct: 357 IDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLA 416 Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDAR--GSQFSGCLHG*LPVRNDEIVXVGVT*DSGG 716 +LC+EAALQ IREKMD+IDL+D++IDA S H + N ++ Sbjct: 417 ALCTEAALQCIREKMDVIDLDDEEIDAEILNSMAVSNDHFQTALGNSN---PSALRETVV 473 Query: 717 EVPNVTWTDIG 749 EVPNV+W DIG Sbjct: 474 EVPNVSWEDIG 484 Score = 176 bits (429), Expect = 1e-44 Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 3/206 (1%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185 G+ P +G+L YGPPG GKTL+A+A+ANE A F I GPE+++ GESE+N+R+ F++A Sbjct: 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 570 Query: 186 DKNSPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356 +++P ++F DELD+IA +R + G+ R+++QLLT MDGM V ++ ATNRP Sbjct: 571 RQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 630 Query: 357 NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536 + IDPAL R GR D+ I I +PD R +I + + + DVDL +A + G GAD Sbjct: 631 DIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGAD 690 Query: 537 LASLCSEAALQQIREKMDLIDLEDDQ 614 + +C + IRE ++ D+E ++ Sbjct: 691 ITEICQRSCKYAIRENIEK-DIEKER 715 Score = 38.3 bits (85), Expect = 0.005 Identities = 18/29 (62%), Positives = 24/29 (82%) Frame = +1 Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711 E+LNS+AVS D+F+ A+ S+ SALRETV Sbjct: 444 EILNSMAVSNDHFQTALGNSNPSALRETV 472 >At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A) (CDC48) identical to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana} Length = 809 Score = 375 bits (923), Expect = e-104 Identities = 186/251 (74%), Positives = 212/251 (84%), Gaps = 2/251 (0%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEE Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362 A+KN+P+IIFIDE+D+IAPKREKT+GEVERRIVSQLLTLMDG+K +HVIVM ATNRPNS Sbjct: 296 AEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 355 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 IDPALRRFGRFDREIDIG+PD GRLE+LRIHTKNMKL +DVDL +I+ ++HG+VGADLA Sbjct: 356 IDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLA 415 Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDAR--GSQFSGCLHG*LPVRNDEIVXVGVT*DSGG 716 +LC+EAALQ IREKMD+IDLEDD IDA S H + N ++ Sbjct: 416 ALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSN---PSALRETVV 472 Query: 717 EVPNVTWTDIG 749 EVPNV+W DIG Sbjct: 473 EVPNVSWNDIG 483 Score = 172 bits (418), Expect = 2e-43 Identities = 86/207 (41%), Positives = 129/207 (62%), Gaps = 4/207 (1%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185 G+ P +G+L YGPPG GKTL+A+A+ANE A F + GPE+++ GESE+N+R+ F++A Sbjct: 510 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569 Query: 186 DKNSPAIIFIDELDAIAPKR----EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353 +++P ++F DELD+IA +R G R+++QLLT MDGM V ++ ATNR Sbjct: 570 RQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 629 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 P+ ID AL R GR D+ I I +PD RL I + + + DVD+ +A + G GA Sbjct: 630 PDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGA 689 Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQ 614 D+ +C A IRE ++ D+E ++ Sbjct: 690 DITEICQRACKYAIRENIEK-DIEKEK 715 Score = 35.1 bits (77), Expect = 0.050 Identities = 16/29 (55%), Positives = 23/29 (79%) Frame = +1 Query: 625 EVLNSLAVSMDNFRYAMTKSSXSALRETV 711 E+LNS+AV+ ++F A+ S+ SALRETV Sbjct: 443 EILNSMAVTNEHFHTALGNSNPSALRETV 471 >At3g56690.1 68416.m06306 calmodulin-binding protein identical to calmodulin-binding protein GI:6760428 from [Arabidopsis thaliana] Length = 1022 Score = 210 bits (512), Expect = 1e-54 Identities = 98/197 (49%), Positives = 143/197 (72%), Gaps = 1/197 (0%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G++P +G+L++GPPGTGKT +AR A +G FF +NGPEI+S+ GESE L + F Sbjct: 413 LGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRS 472 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362 A +PA++FID+LDAIAP R++ E+ +R+V+ LL LMDG+ ++ V+V+AATNRP+S Sbjct: 473 ASNATPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDS 532 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADL 539 I+PALRR GR DREI+IG+P +T R +IL I + M+ ++ + Q+A +HG VGADL Sbjct: 533 IEPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHSLSNIQVEQLAMATHGFVGADL 592 Query: 540 ASLCSEAALQQIREKMD 590 ++LC EAA +R +D Sbjct: 593 SALCCEAAFVCLRRHLD 609 Score = 187 bits (455), Expect = 8e-48 Identities = 94/213 (44%), Positives = 138/213 (64%), Gaps = 2/213 (0%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IG +PP GILM+GPPG KTL+ARAVA+E F + GPE+ SK GESE +R F + Sbjct: 753 IGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAK 812 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGMKKSSHVIVMAATNRP 356 A N+P+IIF DE+D++A R K + V R++SQLL +DG+ + V V+AATNRP Sbjct: 813 ARANAPSIIFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRP 872 Query: 357 NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536 + ID AL R GRFDR + +G P+ T R IL+IH + + D+ L ++A+ + G+ GAD Sbjct: 873 DKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLKELASITKGYTGAD 932 Query: 537 LASLCSEAALQQIREKMDLIDLEDDQIDARGSQ 635 ++ +C EAA+ + E +++ ++ + A SQ Sbjct: 933 ISLICREAAIAALEESLEMEEISMRHLKAAISQ 965 >At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH-like protein Pftf precursor GI:4325041 from [Nicotiana tabacum] Length = 687 Score = 188 bits (457), Expect = 5e-48 Identities = 98/211 (46%), Positives = 134/211 (63%), Gaps = 5/211 (2%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G K P+G+L+ GPPGTGKTL+A+A+A E G FF ++G E + G S R F + Sbjct: 251 LGAKIPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNK 310 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A NSP I+FIDE+DA+ R G + + ++Q+LT MDG ++ VIV+AATNR Sbjct: 311 AKANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNR 370 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 P +D AL R GRFDR++ +G+PD GR EIL++H+++ KL DV L IA + G GA Sbjct: 371 PEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGA 430 Query: 534 DLASLCSEAALQQIREKMDLIDLE--DDQID 620 DLA+L +EAA+ R D I L DD ID Sbjct: 431 DLANLMNEAAILAGRRGKDKITLTEIDDSID 461 >At1g05910.1 68414.m00620 cell division cycle protein 48-related / CDC48-related similar to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA family, PF00439: Bromodomain Length = 1210 Score = 188 bits (457), Expect = 5e-48 Identities = 96/208 (46%), Positives = 134/208 (64%), Gaps = 6/208 (2%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVA---NETG--AFFFLINGPEIMSKLAGESESNLRKA 173 + PPRG+L+ GPPGTGKTLIARA+A ++ G F++ G +++SK GE+E L+ Sbjct: 412 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLL 471 Query: 174 FEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353 FEEA +N P+IIF DE+D +AP R ++ IVS LL LMDG+ V+++ ATNR Sbjct: 472 FEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 531 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL-XQIAAESHGHVG 530 ++ID ALRR GRFDRE + +P R EIL IHT+ K +L ++AA G+ G Sbjct: 532 VDAIDGALRRPGRFDREFNFSLPGCEARAEILDIHTRKWKHPPTRELKEELAATCVGYCG 591 Query: 531 ADLASLCSEAALQQIREKMDLIDLEDDQ 614 ADL +LC+EAA++ REK + DD+ Sbjct: 592 ADLKALCTEAAIRAFREKYPQVYTSDDK 619 >At3g01610.1 68416.m00092 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 820 Score = 183 bits (446), Expect = 1e-46 Identities = 110/270 (40%), Positives = 155/270 (57%), Gaps = 21/270 (7%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IGVKPP GIL +GPPG GKT +A A+ANE G F+ I+ E++S ++G SE N+R+ F + Sbjct: 262 IGVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSK 321 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGM----------KKSSHVI 332 A + +P+I+FIDE+DAI KRE E+E+RIV+QLLT MDG + V+ Sbjct: 322 AYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVL 381 Query: 333 VMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAE 512 V+ ATNRP+++DPALRR GRF+ EI + PD R EIL + + ++L D +IA Sbjct: 382 VIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARL 441 Query: 513 SHGHVGADLASLCSEAALQQIREKMDLI------DLEDDQIDARGSQFSGCLHG*LPVRN 674 + G VGADL S+ A + I+ +D D EDD+ R L + Sbjct: 442 TPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDGEDDKSWLRMPWPEEELEKLFVKMS 501 Query: 675 D-----EIVXVGVT*DSGGEVPNVTWTDIG 749 D +V +T + VP+V W D+G Sbjct: 502 DFEEAVNLVQASLTREGFSIVPDVKWDDVG 531 Score = 153 bits (370), Expect = 2e-37 Identities = 83/205 (40%), Positives = 118/205 (57%), Gaps = 1/205 (0%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185 GV G L+YGPPG GKTLIA+A ANE GA F I G E+++K GESE +R F+ A Sbjct: 558 GVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRA 617 Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSI 365 +P +IF DE+DA+ R K V R+++Q L +DG ++ +V V+ ATNRP+ + Sbjct: 618 RTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGER-RNVYVIGATNRPDVV 676 Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAES-HGHVGADLA 542 DPA R GRF + + +P+A R IL+ + + VDL IA + G GADLA Sbjct: 677 DPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLA 736 Query: 543 SLCSEAALQQIREKMDLIDLEDDQI 617 L +A Q + E + + +D + Sbjct: 737 HLVQKATFQAVEEMIGSSESSEDDV 761 >At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc dependent protease VAR2 GI:7650138 from [Arabidopsis thaliana] Length = 695 Score = 182 bits (443), Expect = 2e-46 Identities = 93/211 (44%), Positives = 135/211 (63%), Gaps = 5/211 (2%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G K P+G+L+ GPPGTGKTL+A+A+A E G FF I+G E + G S +R F++ Sbjct: 255 VGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKK 314 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A +N+P I+F+DE+DA+ +R G + + ++QLLT MDG + ++ VIV+AATNR Sbjct: 315 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNR 374 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 + +D AL R GRFDR++ + +PD GR +IL++H N K +DV L IA + G GA Sbjct: 375 ADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGA 434 Query: 534 DLASLCSEAALQQIREKMDLIDLE--DDQID 620 DLA+L +EAA+ R I + DD ID Sbjct: 435 DLANLLNEAAILAGRRARTSISSKEIDDSID 465 >At2g03670.1 68415.m00326 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 603 Score = 182 bits (442), Expect = 3e-46 Identities = 105/256 (41%), Positives = 149/256 (58%), Gaps = 7/256 (2%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G+K PRG+L+YGPPGTGKT + RAV E A +++ + AGESE LR+AF E Sbjct: 51 LGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAE 110 Query: 183 ADKNS----PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSS---HVIVMA 341 A ++ P++IFIDE+D + P+R+ E + RI SQL TLMD K SS V+V+A Sbjct: 111 ASSHAVSDKPSVIFIDEIDVLCPRRDARR-EQDVRIASQLFTLMDSNKPSSSAPRVVVVA 169 Query: 342 ATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHG 521 +TNR ++IDPALRR GRFD +++ P+ RL+IL+++TK + L VDL IA +G Sbjct: 170 STNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNG 229 Query: 522 HVGADLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSGCLHG*LPVRNDEIVXVGVT 701 +VGADL +LC EA + + D + L S ++ G+T Sbjct: 230 YVGADLEALCREATISASKRSSDSLILTSQDFKIAKSVVGPSINR------------GIT 277 Query: 702 *DSGGEVPNVTWTDIG 749 E+P VTW D+G Sbjct: 278 ----VEIPKVTWDDVG 289 Score = 180 bits (438), Expect = 9e-46 Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 4/199 (2%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G+ P RGIL++GPPG KT +A+A AN A FF ++ E+ S GE E+ LR F+ Sbjct: 315 MGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQR 374 Query: 183 ADKNSPAIIFIDELDAIAPKR----EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350 A SP+IIF DE D +A KR V R++S LLT MDG++++ ++V+AATN Sbjct: 375 ARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATN 434 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530 RP +ID AL R GRFD + + PD R EIL++HT+NM LGDDVDL +IA E+ G Sbjct: 435 RPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTG 494 Query: 531 ADLASLCSEAALQQIREKM 587 A+L LC E+ +RE + Sbjct: 495 AELEGLCRESGTVSLRENI 513 >At3g02450.1 68416.m00232 cell division protein ftsH, putative similar to SWISS-PROT:P46469 cell division protein ftsH homolog [Lactococcus lactis]; contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 622 Score = 181 bits (440), Expect = 5e-46 Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 2/204 (0%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G + PRG+L+ GPPGTGKTL+ARAVA E G FF ++ E + G + +R F Sbjct: 362 LGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNA 421 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362 A KNSP+IIFIDELDA+ KR ++ + + ++QLLT MDG + + VIV+AATNRP + Sbjct: 422 ARKNSPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEA 481 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGHVGAD 536 +D AL R GRF R++ + PD GR +IL IH +++ L +D L +A+ + G VGAD Sbjct: 482 LDSALCRPGRFSRKVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFVGAD 541 Query: 537 LASLCSEAALQQIREKMDLIDLED 608 LA++ +EAAL R + + ED Sbjct: 542 LANIVNEAALLAARRGGEAVARED 565 >At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell division protein ftsH homolog 1, chloroplast precursor (EC 3.4.24.-) [Arabidopsis thaliana] Length = 716 Score = 180 bits (439), Expect = 7e-46 Identities = 93/210 (44%), Positives = 132/210 (62%), Gaps = 3/210 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G K P+G L+ GPPGTGKTL+ARAVA E G FF E + G S +R FE+ Sbjct: 290 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEK 349 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A +P I+FIDE+DA+ +R G + + ++QLLT MDG +S VIV+AATNR Sbjct: 350 AKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 409 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 P+ +D AL R GRFDR++ + PD GR++IL++H++ LG DVD ++A + G GA Sbjct: 410 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGA 469 Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDA 623 DL +L +EAA+ R ++ I +D+ DA Sbjct: 470 DLQNLMNEAAILAARRELKEIS-KDEISDA 498 >At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH protease GI:13183728 from [Medicago sativa] Length = 704 Score = 180 bits (438), Expect = 9e-46 Identities = 92/210 (43%), Positives = 132/210 (62%), Gaps = 3/210 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G K P+G L+ GPPGTGKTL+ARAVA E G FF E + G S +R FE+ Sbjct: 278 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEK 337 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A +P I+FIDE+DA+ +R G + + ++QLLT MDG +S VIV+AATNR Sbjct: 338 AKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 397 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 P+ +D AL R GRFDR++ + PD GR++IL++H++ +G DVD ++A + G GA Sbjct: 398 PDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGA 457 Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDA 623 DL +L +EAA+ R ++ I +D+ DA Sbjct: 458 DLQNLMNEAAILAARRELKEIS-KDEISDA 486 >At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a) almost identical to 26S proteasome AAA-ATPase subunit RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila melanogaster 26S proteasome subunit 4 ATPase, PID:g1066065 Length = 443 Score = 178 bits (434), Expect = 3e-45 Identities = 89/197 (45%), Positives = 125/197 (63%), Gaps = 3/197 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IG+KPP+G+++YG PGTGKTL+A+AVAN T A F + G E++ K G+ +R+ F Sbjct: 217 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRV 276 Query: 183 ADKNSPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353 AD SP+I+FIDE+DA+ KR H GE E +R + +LL +DG V V+ ATNR Sbjct: 277 ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 336 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 S+DPAL R GR DR+I+ +PD R I +IHT M L +DV+L + GA Sbjct: 337 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGA 396 Query: 534 DLASLCSEAALQQIREK 584 D+ ++C+EA L +RE+ Sbjct: 397 DIKAICTEAGLLALRER 413 >At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc dependent protease GI:7650138 from [Arabidopsis thaliana] Length = 685 Score = 178 bits (433), Expect = 4e-45 Identities = 91/211 (43%), Positives = 134/211 (63%), Gaps = 5/211 (2%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G + P+G+L+ GPPGTGKTL+A+A+A E G FF I+G E + G S +R F++ Sbjct: 248 VGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKK 307 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A +N+P I+F+DE+DA+ +R G + + ++QLLT MDG + ++ VIV+AATNR Sbjct: 308 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNR 367 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 + +D AL R GRFDR++ + +PD GR +IL++H+ N K V L IA + G GA Sbjct: 368 ADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGA 427 Query: 534 DLASLCSEAALQQIREKMDLIDLE--DDQID 620 DLA+L +EAA+ R I + DD ID Sbjct: 428 DLANLLNEAAILAGRRGKTAISSKEIDDSID 458 >At5g58870.1 68418.m07376 FtsH protease, putative contains similarity to cell division protein FtsH homolog 3 SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis sp.} Length = 806 Score = 177 bits (431), Expect = 6e-45 Identities = 95/208 (45%), Positives = 129/208 (62%), Gaps = 6/208 (2%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G +PPRG+L+ G PGTGKTL+A+AVA E+ F + E + G S +R F Sbjct: 357 LGARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFAR 416 Query: 183 ADKNSPAIIFIDELDAIAPKRE----KTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350 A K +P+IIFIDE+DA+A R+ + + ++QLLT MDG SS VIV+ ATN Sbjct: 417 AKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATN 476 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT--KNMKLGDDVDLXQIAAESHGH 524 R + +DPALRR GRFDR + + PD GR IL++H K + LGDDV+L IA+ + G Sbjct: 477 RADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGF 536 Query: 525 VGADLASLCSEAALQQIREKMDLIDLED 608 GADLA+L +EAAL R+ +D D Sbjct: 537 TGADLANLVNEAALLAGRKSKMTVDKID 564 >At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4, putative similar to Swiss-Prot:P48601 26S protease regulatory subunit 4 (P26S4) [Drosophila melanogaster] Length = 443 Score = 175 bits (427), Expect = 2e-44 Identities = 88/197 (44%), Positives = 125/197 (63%), Gaps = 3/197 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IG+KPP+G+++YG PGTGKTL+A+AVAN T A F + G E++ K G+ +R+ F Sbjct: 217 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRV 276 Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353 AD SP+I+FIDE+DA+ KR + GE E +R + +LL +DG V V+ ATNR Sbjct: 277 ADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 336 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 S+DPAL R GR DR+I+ +PD R I +IHT M L +DV+L + GA Sbjct: 337 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGA 396 Query: 534 DLASLCSEAALQQIREK 584 D+ ++C+EA L +RE+ Sbjct: 397 DIKAICTEAGLLALRER 413 >At3g47060.1 68416.m05110 FtsH protease, putative contains similarity to FtsH protease GI:13183728 from [Medicago sativa] Length = 802 Score = 174 bits (424), Expect = 5e-44 Identities = 94/194 (48%), Positives = 125/194 (64%), Gaps = 6/194 (3%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G +PPRG+L+ G PGTGKTL+A+AVA E F + E + G S +R F Sbjct: 353 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFAR 412 Query: 183 ADKNSPAIIFIDELDAIAPKRE---KTHGEVER-RIVSQLLTLMDGMKKSSHVIVMAATN 350 A K +P+IIFIDE+DA+A R+ + ER + ++QLLT MDG +S VIV+ ATN Sbjct: 413 AKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 472 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHT--KNMKLGDDVDLXQIAAESHGH 524 R + +DPALRR GRFDR + + PD GR ILR+H K + LGDDV+L IA+ + G Sbjct: 473 RADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGF 532 Query: 525 VGADLASLCSEAAL 566 GADLA+L +EAAL Sbjct: 533 TGADLANLVNEAAL 546 >At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit p42D, putative similar to 26S proteasome regulatory complex subunit p42D [Drosophila melanogaster] gi|6434958|gb|AAF08391 Length = 399 Score = 171 bits (416), Expect = 4e-43 Identities = 87/205 (42%), Positives = 129/205 (62%), Gaps = 3/205 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G+KPP+G+L+YGPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F Sbjct: 168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNY 227 Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A ++ P IIF+DE+DAI +R E T + E +R + +LL +DG + V ++ ATNR Sbjct: 228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 287 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 P+ +DPAL R GR DR+I+I +P+ R+EIL+IH + ++D I G GA Sbjct: 288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGA 347 Query: 534 DLASLCSEAALQQIREKMDLIDLED 608 DL ++C+EA + IR + D + ED Sbjct: 348 DLRNICTEAGMFAIRAERDYVIHED 372 >At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3) identical to 26S proteasome AAA-ATPase subunit RPT3 GI:6652882 from [Arabidopsis thaliana] Length = 408 Score = 170 bits (414), Expect = 7e-43 Identities = 87/201 (43%), Positives = 128/201 (63%), Gaps = 3/201 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IG+ PPRG+L+YGPPGTGKT++A+AVAN T A F + G E + K GE +R F Sbjct: 184 IGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRL 243 Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A +N+PAIIFIDE+DAIA R +T + E +RI+ +LL MDG ++ +V V+ ATNR Sbjct: 244 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR 303 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 +++DPAL R GR DR+I+ +PD + + ++ T M L D+VDL + A Sbjct: 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAA 363 Query: 534 DLASLCSEAALQQIREKMDLI 596 ++A++C EA + +R+ +I Sbjct: 364 EIAAICQEAGMHAVRKNRYVI 384 >At4g23940.1 68417.m03443 FtsH protease, putative contains similarity to zinc dependent protease GI:7650138 from [Arabidopsis thaliana] Length = 946 Score = 170 bits (413), Expect = 1e-42 Identities = 92/218 (42%), Positives = 131/218 (60%), Gaps = 11/218 (5%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G+KPP G+L+ GPPG GKTL+A+A+A E G F+ + G E + L G + +R F+ Sbjct: 458 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKR 517 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRI-----------VSQLLTLMDGMKKSSHV 329 A N P++IFIDE+DA+A +R+ E ++ ++QLL +DG V Sbjct: 518 AKVNKPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTLNQLLIELDGFDTGKGV 577 Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAA 509 I + ATNR + +DPAL R GRFDR+I + P+A GRL+IL+IH +K+ D VDL A+ Sbjct: 578 IFLGATNRRDLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMSDSVDLSSYAS 637 Query: 510 ESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDA 623 G GA LA L EAAL +R+ + I L+ D DA Sbjct: 638 NLPGWSGAKLAQLVQEAALVAVRKTHNSI-LQSDMDDA 674 >At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a) gb|AAF22524.1 Length = 399 Score = 169 bits (412), Expect = 1e-42 Identities = 86/205 (41%), Positives = 129/205 (62%), Gaps = 3/205 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G+KPP+G+L+YGPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F Sbjct: 168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNY 227 Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A ++ P IIF+DE+DAI +R E T + E +R + +LL +DG V ++ ATNR Sbjct: 228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNR 287 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 P+ +DPAL R GR DR+I+I +P+ R++IL+IH + ++D I + G GA Sbjct: 288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGA 347 Query: 534 DLASLCSEAALQQIREKMDLIDLED 608 DL ++C+EA + IR + D + ED Sbjct: 348 DLRNICTEAGMFAIRAERDYVIHED 372 >At3g16290.1 68416.m02056 FtsH protease, putative contains similarity to cell division protein FtsH GI:1652085 from [Synechocystis sp. PCC 6803] Length = 876 Score = 169 bits (412), Expect = 1e-42 Identities = 91/215 (42%), Positives = 135/215 (62%), Gaps = 7/215 (3%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185 GVK P GIL+ GPPG GKTL+A+AVA E G FF I+ + + G S +R ++EA Sbjct: 439 GVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEA 498 Query: 186 DKNSPAIIFIDELDAIAPKRE--KTHGEVER-RIVSQLLTLMDGMKKSSHVIVMAATNRP 356 +N+P+++FIDELDA+ +R K G ER ++QLL +DG + VI +A+TNRP Sbjct: 499 RENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVSLDGFEGRGEVITIASTNRP 558 Query: 357 NSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGAD 536 + +DPAL R GRFDR+I I P GR+EIL++H + + +D+D +A+ + G VGA+ Sbjct: 559 DILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDLDYMAVASMTDGMVGAE 618 Query: 537 LASLCSEAALQQIREKMDLIDLED----DQIDARG 629 LA++ AA+ +R+ + +D QI+ RG Sbjct: 619 LANIVEIAAINMMRDGRTELTTDDLLQAAQIEERG 653 >At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a) similar to 26S proteasome ATPase subunit GI:1395190 from [Spinacia oleracea] Length = 426 Score = 169 bits (411), Expect = 2e-42 Identities = 85/217 (39%), Positives = 128/217 (58%), Gaps = 3/217 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G+ PP+G+L YGPPGTGKTL+ARAVAN T A F + G E++ K GE +R+ F+ Sbjct: 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQM 256 Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A I+F DE+DAI R + G+ E +R + +++ +DG ++ V+ ATNR Sbjct: 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 P+++DPAL R GR DR+++ G+PD R +I +IHT+ M D+ +A GA Sbjct: 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGA 376 Query: 534 DLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSG 644 D+ S+C+EA + IR + + E D +DA G Sbjct: 377 DIRSVCTEAGMYAIRARRKTV-TEKDFLDAVNKVIKG 412 >At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a) identical to GB:AAF22525 GI:6652886 from [Arabidopsis thaliana] Length = 424 Score = 168 bits (409), Expect = 3e-42 Identities = 84/205 (40%), Positives = 127/205 (61%), Gaps = 3/205 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +GV+PP+G+L+YGPPGTGKTL+ARA A +T A F + GP+++ G+ +R AF+ Sbjct: 200 LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQL 259 Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A + +P IIFIDE+DAI KR + G+ E +R + +LL +DG + V+AATNR Sbjct: 260 AKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNR 319 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 + +DPAL R GR DR+I+ P R IL+IH++ M + DV+ ++A + GA Sbjct: 320 ADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGA 379 Query: 534 DLASLCSEAALQQIREKMDLIDLED 608 L ++C EA + +R ++ ED Sbjct: 380 QLKAVCVEAGMLALRRDATEVNHED 404 >At1g03000.1 68414.m00271 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 941 Score = 167 bits (406), Expect = 7e-42 Identities = 88/206 (42%), Positives = 130/206 (63%), Gaps = 5/206 (2%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185 G++ G+L+YGPPGTGKTL+A+AVA E F + GPE+++ GESE N+R FE+A Sbjct: 687 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFEKA 746 Query: 186 DKNSPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGMKKSSH-VIVMAATNRP 356 P +IF DELD++AP R + G V R+VSQ+L +DG+ SS + ++ A+NRP Sbjct: 747 RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRP 806 Query: 357 NSIDPALRRFGRFDREIDIGI-PDATGRLEILRIHTKNMKLGDDVDLXQIAAESHG-HVG 530 + IDPAL R GRFD+ + +G+ DA+ R +L+ T+ KL +DV L +A + G Sbjct: 807 DLIDPALLRPGRFDKLLYVGVNADASYRERVLKALTRKFKLSEDVSLYSVAKKCPSTFTG 866 Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608 AD+ +LC++A Q + K+ D D Sbjct: 867 ADMYALCADAWFQAAKRKVSKSDSGD 892 >At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus musculus] Length = 806 Score = 166 bits (404), Expect = 1e-41 Identities = 87/201 (43%), Positives = 123/201 (61%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G K P+GIL+ G PGTGKTL+A+A+A E G FF G E G +R F+ Sbjct: 390 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQA 449 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362 A K +P IIFIDE+DA+ R++ G ++ + QLL MDG +++ +IVMAATN P+ Sbjct: 450 AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTL-HQLLVEMDGFEQNEGIIVMAATNLPDI 508 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 +DPAL R GRFDR I + PD GR EIL ++ + + +DVD+ IA + G GADLA Sbjct: 509 LDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLA 568 Query: 543 SLCSEAALQQIREKMDLIDLE 605 +L + AA++ E + + E Sbjct: 569 NLVNIAAIKAAVEGAEKLSSE 589 >At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, putative identical to SP:O04019 from [Arabidopsis thaliana] Length = 423 Score = 166 bits (404), Expect = 1e-41 Identities = 84/205 (40%), Positives = 126/205 (61%), Gaps = 3/205 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G++PP+G+L+YGPPGTGKTL+ARA A +T A F + GP+++ G+ +R AF Sbjct: 199 LGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLL 258 Query: 183 ADKNSPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATNR 353 A + SP IIFIDE+DAI KR + G+ E +R + +LL +DG + V+AATNR Sbjct: 259 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNR 318 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGA 533 + +DPAL R GR DR+I+ P R IL+IH++ M + DV+ ++A + GA Sbjct: 319 ADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGA 378 Query: 534 DLASLCSEAALQQIREKMDLIDLED 608 L ++C EA + +R ++ ED Sbjct: 379 QLKAVCVEAGMLALRRDATEVNHED 403 >At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, putative almost identical to 26S proteasome AAA-ATPase subunit RPT6a GI:6652888 from [Arabidopsis thaliana]; almost identical to a member of conserved Sug1 CAD family AtSUG1 GI:13537115 from [Arabidopsis thaliana] Length = 419 Score = 166 bits (403), Expect = 2e-41 Identities = 83/206 (40%), Positives = 136/206 (66%), Gaps = 4/206 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G+ P+G+L+YGPPGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F Sbjct: 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVM 249 Query: 183 ADKNSPAIIFIDELDAIAPKREKT---HGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATN 350 A +++P+IIF+DE+D+I R ++ +G+ E +R + +LL +DG + S+ + V+ ATN Sbjct: 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530 R + +D AL R GR DR+I+ P+ R +IL+IH++ M L +DL +IA + +G G Sbjct: 310 RIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369 Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608 A+L ++C+EA + +RE+ + ED Sbjct: 370 AELKAVCTEAGMFALRERRVHVTQED 395 >At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) Length = 419 Score = 166 bits (403), Expect = 2e-41 Identities = 83/206 (40%), Positives = 136/206 (66%), Gaps = 4/206 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G+ P+G+L+YGPPGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F Sbjct: 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVM 249 Query: 183 ADKNSPAIIFIDELDAIAPKREKT---HGEVE-RRIVSQLLTLMDGMKKSSHVIVMAATN 350 A +++P+IIF+DE+D+I R ++ +G+ E +R + +LL +DG + S+ + V+ ATN Sbjct: 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530 R + +D AL R GR DR+I+ P+ R +IL+IH++ M L +DL +IA + +G G Sbjct: 310 RIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369 Query: 531 ADLASLCSEAALQQIREKMDLIDLED 608 A+L ++C+EA + +RE+ + ED Sbjct: 370 AELKAVCTEAGMFALRERRVHVTQED 395 >At3g15120.1 68416.m01913 AAA-type ATPase family protein contains PROSITE domains, PS00674: AAA-protein family signature and PS00017: ATP/GTP-binding site motif A (P-loop) Length = 1954 Score = 166 bits (403), Expect = 2e-41 Identities = 85/203 (41%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLR 167 +G+ PPRGIL++G PGTGKTL+ RA+ +F G + + K G++E LR Sbjct: 748 LGLTPPRGILLHGHPGTGKTLVVRALIGSLARGNRRIAYFARKGADCLGKYVGDAERQLR 807 Query: 168 KAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAAT 347 F+ A+K P+IIF DE+D +APKR + + +VS LL L+DG+K V+V+ AT Sbjct: 808 LLFQVAEKCQPSIIFFDEIDGLAPKRSRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGAT 867 Query: 348 NRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNM-KLGDDVDLXQIAAESHGH 524 N P++IDPALRR GRFDREI +P R I+ +HT+ K L IA E+ G Sbjct: 868 NYPDAIDPALRRPGRFDREIYFPLPSVDDRAAIISLHTRKWPKPVSGYLLKWIAKETAGF 927 Query: 525 VGADLASLCSEAALQQIREKMDL 593 GAD+ +LC++AA+ + L Sbjct: 928 AGADIQALCTQAAMIALNRSFPL 950 >At2g26140.1 68415.m03137 FtsH protease, putative contains similarity to YME1 GI:295582, a member of the ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding genes from [Saccharomyces cerevisiae] Length = 717 Score = 165 bits (401), Expect = 3e-41 Identities = 87/202 (43%), Positives = 119/202 (58%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G K P+G+L+ GPPGTGKT++ARA+A E G FF +G E G +R F Sbjct: 255 LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSA 314 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNS 362 A K SP IIFIDE+DAI R + + ++Q+L +DG K++ +IV+AATN P S Sbjct: 315 AKKCSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPES 374 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 +D AL R GRFDR I + PD GR +IL H + +DVDL IA + G GADLA Sbjct: 375 LDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLA 434 Query: 543 SLCSEAALQQIREKMDLIDLED 608 +L + AAL+ + + + D Sbjct: 435 NLVNVAALKAAMDGSKDVTMSD 456 >At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-metalloprotease FtsH [Pisum sativum] GI:15021761; contains Pfam profiles PF01434: Peptidase family M41, PF00004: ATPase AAA family Length = 809 Score = 163 bits (395), Expect = 1e-40 Identities = 89/199 (44%), Positives = 126/199 (63%), Gaps = 5/199 (2%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G K P+G L+ GPPGTGKTL+A+A A E+G F I+G + M G S +R F+E Sbjct: 350 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQE 409 Query: 183 ADKNSPAIIFIDELDAIAPKREK--THGEVERR-IVSQLLTLMDGMKKSSHVIVMAATNR 353 A + +P+IIFIDE+DAI R + G ER ++QLL MDG ++ V+V+A TNR Sbjct: 410 ARQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNR 469 Query: 354 PNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGHV 527 P+ +D AL R GRFDR+I I PD GR +I +I+ K +KL + ++AA + G Sbjct: 470 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFA 529 Query: 528 GADLASLCSEAALQQIREK 584 GAD+A++C+EAAL R + Sbjct: 530 GADIANVCNEAALIAARHE 548 >At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, putative similar to 26S proteasome AAA-ATPase subunit RPT1 SP:Q41365 from [Spinacia oleracea] Length = 464 Score = 163 bits (395), Expect = 1e-40 Identities = 84/211 (39%), Positives = 125/211 (59%), Gaps = 4/211 (1%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G+ PP+G+L YGPPG+GKTL+ARAVAN TGA F + G E++ K GE +R+ F+ Sbjct: 234 LGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQM 293 Query: 183 ADKNSPAIIFIDELDAIAPKR----EKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350 A I+F DE+DAI R + EV+R ++ ++L +DG ++ V+ ATN Sbjct: 294 ARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTML-EILYQLDGFDARGNIKVLMATN 352 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530 RP+ +DPAL R GR DR+++ +PD GR +I +IHT+ M D+ +A G Sbjct: 353 RPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTG 412 Query: 531 ADLASLCSEAALQQIREKMDLIDLEDDQIDA 623 AD+ S+C EA + I + + E D +DA Sbjct: 413 ADIRSVCIEAGMYAIGARRKSV-TEKDFLDA 442 >At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-metalloprotease FtsH [Pisum sativum] GI:15021761; contains Pfam profiles PF01434: Peptidase family M41, PF00004: ATPase AAA family Length = 813 Score = 160 bits (388), Expect = 1e-39 Identities = 88/200 (44%), Positives = 126/200 (63%), Gaps = 6/200 (3%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G K P+G L+ GPPGTGKTL+A+A A E+ F I+G + M G S +R F+E Sbjct: 355 LGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQE 414 Query: 183 ADKNSPAIIFIDELDAIAPKREK---THGEVERR-IVSQLLTLMDGMKKSSHVIVMAATN 350 A + +P+IIFIDE+DAI R + + G ER ++QLL MDG ++ V+V+A TN Sbjct: 415 ARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTN 474 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDL--XQIAAESHGH 524 RP+ +D AL R GRFDR+I I PD GR +I +I+ K +KL + ++AA + G Sbjct: 475 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGF 534 Query: 525 VGADLASLCSEAALQQIREK 584 GAD+A++C+EAAL R + Sbjct: 535 AGADIANVCNEAALIAARHE 554 >At1g64110.2 68414.m07264 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 829 Score = 156 bits (379), Expect = 1e-38 Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 3/205 (1%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188 +KP RGIL++GPPGTGKT++A+A+A E GA F ++ I SK GE E N+R F A Sbjct: 552 LKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAS 611 Query: 189 KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359 K SP IIF+DE+D++ +R + E R+I ++ ++ DG+ K ++V+AATNRP Sbjct: 612 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPF 671 Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539 +D A+ R RF+R I +G+P R +ILR K+ +++D ++A + G+ G+DL Sbjct: 672 DLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGYTGSDL 729 Query: 540 ASLCSEAALQQIREKMDLIDLEDDQ 614 +LC+ AA + +RE + ++D + Sbjct: 730 KNLCTTAAYRPVRELIQQERIKDTE 754 >At1g64110.1 68414.m07263 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 824 Score = 156 bits (379), Expect = 1e-38 Identities = 81/205 (39%), Positives = 129/205 (62%), Gaps = 3/205 (1%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188 +KP RGIL++GPPGTGKT++A+A+A E GA F ++ I SK GE E N+R F A Sbjct: 547 LKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAS 606 Query: 189 KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359 K SP IIF+DE+D++ +R + E R+I ++ ++ DG+ K ++V+AATNRP Sbjct: 607 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPF 666 Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539 +D A+ R RF+R I +G+P R +ILR K+ +++D ++A + G+ G+DL Sbjct: 667 DLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGYTGSDL 724 Query: 540 ASLCSEAALQQIREKMDLIDLEDDQ 614 +LC+ AA + +RE + ++D + Sbjct: 725 KNLCTTAAYRPVRELIQQERIKDTE 749 >At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) identical to peroxisome biogenesis protein PEX1 [Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains Pfam profile PF00004: ATPase, AAA family; identical to cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA, partial cds GI:12006271 Length = 1130 Score = 156 bits (378), Expect = 2e-38 Identities = 81/191 (42%), Positives = 115/191 (60%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI 206 +L+YGPPG GKT I A A F + GPE+++K G SE +R F +A +P I Sbjct: 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCI 940 Query: 207 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRF 386 +F DE D+IAPKR + V R+V+Q LT +DG++ + V V AAT+RP+ +DPAL R Sbjct: 941 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRP 1000 Query: 387 GRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASLCSEAAL 566 GR DR + P RLEIL + ++ + + DD+DL IA + G GADL +L S+A L Sbjct: 1001 GRLDRLLLCDFPSPPERLEILTVLSRKLLMADDIDLEPIALMTEGFSGADLQALLSDAQL 1060 Query: 567 QQIREKMDLID 599 + E ++ D Sbjct: 1061 AAVHEYLNRED 1071 Score = 63.7 bits (148), Expect = 1e-10 Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 19/266 (7%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVA------NETGAFFFLINGPEIMSKLAGESESNLRK 170 + P IL+YGPPG+GKT++ARA A + A L++ + + L Sbjct: 590 IPSPGHILIYGPPGSGKTILARAAAKYFEEQKDLLAHVILVSCSTLALEKVQHIHHVLSS 649 Query: 171 AFEEADKNSPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLT-LMD--GMKKSSH-- 326 E +++P++I +D+LD+I T G V ++++ LT ++D G ++S Sbjct: 650 VIAEGLEHAPSVIILDDLDSIISSSSDTEGTQASVGVTMLTKFLTDVIDDYGEYRNSSCG 709 Query: 327 ---VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR--IHTKNMKLGDDVD 491 + +A+ I L GRFD + + P + R IL+ I + + +D+ Sbjct: 710 IGPLAFVASVQSLEQIPQTLSSSGRFDFHVQLAAPATSERGAILKHEIQKRLLDCSEDI- 768 Query: 492 LXQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSGCLHG*LPVR 671 L +AA+ G+ DL L A I + L + + + F+ +H +PV Sbjct: 769 LLNLAAKCEGYDAYDLEILVDRAVHAAIGRHLPL-ESNISKYNLVKEDFTRAMHDFVPVA 827 Query: 672 NDEIVXVGVT*DSGGEVPNVTWTDIG 749 +I S E + W D+G Sbjct: 828 MRDIT------KSASEGGRLGWEDVG 847 >At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to zinc dependent protease [Arabidopsis thaliana] GI:7650138; contains Pfam profile PF00004: ATPase AAA family Length = 855 Score = 155 bits (377), Expect = 2e-38 Identities = 85/210 (40%), Positives = 131/210 (62%), Gaps = 9/210 (4%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185 G+ P+G+L++GPPGTGKTL+A+A+A E G FF NG + + G + S ++ F + Sbjct: 345 GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASS 404 Query: 186 DKNSPAIIFIDELDAIAPKR---EKTHGEVER-RIVSQLLTLMDGMK-KSSHVIVMAATN 350 +P+IIFIDE+DAI KR + G ER + + Q+LT MDG K +S V+V+ ATN Sbjct: 405 RSYAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVTTSQVLVIGATN 464 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN--MKLGDDVD--LXQIAAESH 518 R + +DPAL R GRFD+ I +G+P GRL IL++H +N + D+ + L ++A + Sbjct: 465 RLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRSEDEKEELLQEVAENTE 524 Query: 519 GHVGADLASLCSEAALQQIREKMDLIDLED 608 GA+L ++ +EA + R+ +D I E+ Sbjct: 525 DFTGAELQNVLNEAGILTARKDLDYIGREE 554 >At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family Length = 398 Score = 154 bits (374), Expect = 5e-38 Identities = 78/194 (40%), Positives = 117/194 (60%), Gaps = 2/194 (1%) Frame = +3 Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194 P +G+L+YGPPGTGKT++A+A+A E+GA F + +MSK G+++ + F A K Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKL 177 Query: 195 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH--VIVMAATNRPNSID 368 PAIIFIDE+++ +R T E + ++ + L DG H V+V+AATNRP+ +D Sbjct: 178 QPAIIFIDEVESFLGQRRSTDHEAMANMKTEFMALWDGFSTDPHARVMVLAATNRPSELD 237 Query: 369 PALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASL 548 A+ R R + +IGIPD R EIL++ K ++ D+D IA G+ G+D+ L Sbjct: 238 EAILR--RLPQAFEIGIPDRRERAEILKVTLKGERVEPDIDFDHIARLCEGYTGSDIFEL 295 Query: 549 CSEAALQQIREKMD 590 C +AA IRE +D Sbjct: 296 CKKAAYFPIREILD 309 >At4g28000.1 68417.m04016 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 726 Score = 152 bits (369), Expect = 2e-37 Identities = 82/205 (40%), Positives = 129/205 (62%), Gaps = 3/205 (1%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188 +KP RGIL++GPPGTGKT++A+A+ANE GA F ++ I SK GE E N+R F A Sbjct: 445 LKPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAA 504 Query: 189 KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGMKKSS--HVIVMAATNRPN 359 K SP IIF+DE+D++ +R + E R+I ++ +T DG+ ++ ++V+AATNRP Sbjct: 505 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMSNAGDRILVLAATNRPF 564 Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539 +D A+ R RF+R I +G+P R +ILR K +++D ++A + G+ G+DL Sbjct: 565 DLDEAIIR--RFERRIMVGLPSVESREKILRTLLSKEKT-ENLDFQELAQMTDGYSGSDL 621 Query: 540 ASLCSEAALQQIREKMDLIDLEDDQ 614 + C+ AA + +RE + L+D + Sbjct: 622 KNFCTTAAYRPVRELIKQECLKDQE 646 >At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to SP|P18708 Vesicular-fusion protein NSF (N-ethylmaleimide-sensitive fusion protein) (NEM-sensitive fusion protein) {Cricetulus griseus}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain; contains non-consensus AT-AC splice sites at intron 2 Length = 742 Score = 151 bits (367), Expect = 4e-37 Identities = 81/215 (37%), Positives = 131/215 (60%), Gaps = 15/215 (6%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFE 179 +G+K +G+L++GPPGTGKTL+AR + G ++NGPE++SK GE+E N+R F Sbjct: 245 LGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLFA 304 Query: 180 EADKNSPA--------IIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGMKKSSHV 329 +A+++ +I DE+DAI R T V IV+QLLT +DG++ ++V Sbjct: 305 DAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVEALNNV 364 Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMK----LGDDVDLX 497 +++ TNR + +D AL R GR + +++I +PD GRL+IL+IHT MK LG D++L Sbjct: 365 LLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQ 424 Query: 498 QIAAESHGHVGADLASLCSEAALQQIREKMDLIDL 602 ++AA + + GA+L + A + ++ + DL Sbjct: 425 ELAARTKNYSGAELEGVVKSATSYALNRQLSMDDL 459 Score = 38.3 bits (85), Expect = 0.005 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Frame = +3 Query: 30 LMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE-SNLRKAFEEADKNSPAI 206 L+ GP G+GKT +A + ++ + I E M L+ ++ +++ K FE+A K+ +I Sbjct: 534 LLEGPSGSGKTALAATIGIDSDFPYVKIVSAETMIGLSESTKCAHIVKVFEDAYKSPMSI 593 Query: 207 IFIDELDAI 233 I +D+++ + Sbjct: 594 IILDDIERL 602 >At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam profile PF00004: ATPase, AAA family Length = 1122 Score = 150 bits (364), Expect = 8e-37 Identities = 82/209 (39%), Positives = 129/209 (61%), Gaps = 3/209 (1%) Frame = +3 Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191 KP +GIL++GPPGTGKT++A+AVA E A F I+ I SK GE E ++ F A K Sbjct: 853 KPCKGILLFGPPGTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASK 912 Query: 192 NSPAIIFIDELDAIAPKRE-KTHGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNS 362 SP++IF+DE+D++ +RE E R+I ++ + DG+ ++ V+V+AATNRP Sbjct: 913 MSPSVIFVDEVDSMLGRREHPREHEASRKIKNEFMMHWDGLTTQERERVLVLAATNRPFD 972 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 +D A+ R R R + +G+PD + R IL++ L D+D+ +IA+ ++G+ G+DL Sbjct: 973 LDEAVIR--RLPRRLMVGLPDTSNRAFILKVILAKEDLSPDLDIGEIASMTNGYSGSDLK 1030 Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDARG 629 +LC AA + I+E ++ E D A+G Sbjct: 1031 NLCVTAAHRPIKEILEKEKRERDAALAQG 1059 >At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family; similar to Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar to mitochondrial sorting protein 1 (MSP1) protein (TAT-binding homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae] Length = 1265 Score = 149 bits (360), Expect = 3e-36 Identities = 81/196 (41%), Positives = 121/196 (61%), Gaps = 3/196 (1%) Frame = +3 Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191 KP +GIL++GPPGTGKT++A+AVA E GA F I+ I SK GE E ++ F A K Sbjct: 996 KPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1055 Query: 192 NSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNS 362 +P++IF+DE+D++ +RE E R++ ++ + DG+ K V+V+AATNRP Sbjct: 1056 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFD 1115 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 +D A+ R R R + + +PDAT R +IL + ++ DVDL IA + G+ G+DL Sbjct: 1116 LDEAVIR--RLPRRLMVNLPDATNRSKILSVILAKEEIAPDVDLEAIANMTDGYSGSDLK 1173 Query: 543 SLCSEAALQQIREKMD 590 +LC AA IRE ++ Sbjct: 1174 NLCVTAAHFPIREILE 1189 >At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family; similar to mitochondrial sorting protein 1 (MSP1) (TAT-binding homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae] Length = 1252 Score = 147 bits (356), Expect = 8e-36 Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 3/196 (1%) Frame = +3 Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191 KP +GIL++GPPGTGKT++A+AVA E GA F I+ I SK GE E ++ F A K Sbjct: 983 KPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1042 Query: 192 NSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNS 362 +P++IF+DE+D++ +RE E R++ ++ + DG+ K V+V+AATNRP Sbjct: 1043 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMINWDGLRTKDKERVLVLAATNRPFD 1102 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 +D A+ R R R + + +PD+ R +IL + ++ +DVDL IA + G+ G+DL Sbjct: 1103 LDEAVIR--RLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAIANMTDGYSGSDLK 1160 Query: 543 SLCSEAALQQIREKMD 590 +LC AA IRE ++ Sbjct: 1161 NLCVTAAHLPIREILE 1176 >At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family Length = 403 Score = 145 bits (352), Expect = 2e-35 Identities = 73/194 (37%), Positives = 118/194 (60%), Gaps = 2/194 (1%) Frame = +3 Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194 P +G+L+YGPPGTGKT++A+A+A E+ A F + +MSK G+++ + F A K Sbjct: 121 PQKGVLLYGPPGTGKTMLAKAIARESEAVFINVKVSNLMSKWFGDAQKLVSAVFSLAYKL 180 Query: 195 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPNSID 368 PAIIFIDE+D+ +R T E + ++ + L DG +++ V+V+AATNRP+ +D Sbjct: 181 QPAIIFIDEVDSFLGQRRSTDNEAMSNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 240 Query: 369 PALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASL 548 A+ R RF + +IG+PD R +IL++ K + D++ +IA + G+D+ L Sbjct: 241 EAILR--RFPQSFEIGMPDCQERAQILKVVLKGESVESDINYDRIARLCEDYTGSDIFEL 298 Query: 549 CSEAALQQIREKMD 590 C +AA IRE ++ Sbjct: 299 CKKAAYFPIREILE 312 >At1g50140.1 68414.m05623 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 640 Score = 145 bits (352), Expect = 2e-35 Identities = 81/215 (37%), Positives = 126/215 (58%), Gaps = 3/215 (1%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188 ++P +GIL++GPPGTGKTL+A+A+A E GA F I G + SK G++E + F A Sbjct: 383 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFAT 442 Query: 189 KNSPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359 K +P IIF+DE+D++ R + E RR+ ++ + DG+ K S ++++ ATNRP Sbjct: 443 KLAPVIIFVDEIDSLLGARGGSSEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPF 502 Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539 +D A+ R R R I + +PDA RL+IL+I L D ++A E+ G+ G+DL Sbjct: 503 DLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTPENLESDFQFEKLAKETEGYSGSDL 560 Query: 540 ASLCSEAALQQIREKMDLIDLEDDQIDARGSQFSG 644 +LC AA + ++E L+++Q AR G Sbjct: 561 KNLCIAAAYRPVQEL-----LQEEQKGARAEASPG 590 >At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1 (KTN1) [Arabidopsis thaliana] GI:14133602 Length = 523 Score = 142 bits (345), Expect = 2e-34 Identities = 77/201 (38%), Positives = 124/201 (61%), Gaps = 9/201 (4%) Frame = +3 Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191 +P +G+LM+GPPGTGKTL+A+AVA E G FF ++ + SK GESE +R F+ A Sbjct: 270 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARA 329 Query: 192 NSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGMKKSSH--------VIVMAA 344 +P+ IFIDE+D++ R + E RR+ S+LL +DG+ ++ V+V+AA Sbjct: 330 YAPSTIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAA 389 Query: 345 TNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGH 524 TN P ID ALRR R ++ I I +PD R ++ I+ + +++ DV++ +A + G+ Sbjct: 390 TNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGY 447 Query: 525 VGADLASLCSEAALQQIREKM 587 G DL ++C +A++ +R K+ Sbjct: 448 SGDDLTNVCRDASMNGMRRKI 468 >At3g19740.1 68416.m02499 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 439 Score = 141 bits (342), Expect = 4e-34 Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 3/194 (1%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188 ++P +GIL++GPPGTGKTL+A+A+A E GA F I G + SK G++E + F A Sbjct: 182 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFAS 241 Query: 189 KNSPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGM--KKSSHVIVMAATNRPN 359 K +P IIF+DE+D++ R E RR+ ++ + DG+ K S ++++ ATNRP Sbjct: 242 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPF 301 Query: 360 SIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADL 539 +D A+ R R R I + +PDA RL+IL+I L + ++A E+ G+ G+DL Sbjct: 302 DLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTPENLETGFEFDKLAKETEGYSGSDL 359 Query: 540 ASLCSEAALQQIRE 581 +LC AA + ++E Sbjct: 360 KNLCIAAAYRPVQE 373 >At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains Pfam profiles PF00004: ATPase AAA family, PF04212: MIT domain Length = 487 Score = 140 bits (340), Expect = 7e-34 Identities = 72/193 (37%), Positives = 116/193 (60%), Gaps = 3/193 (1%) Frame = +3 Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191 +P RG+L++GPPG GKT++A+AVA+E+ A FF ++ + SK GE+E ++ F+ A Sbjct: 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLVKTLFQVAIS 306 Query: 192 NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH--VIVMAATNRPNSI 365 P++IF+DE+D+I R + E RR+ S+ L DG+ + VI++ ATN+P + Sbjct: 307 RQPSVIFMDEIDSIMSTRSTSENEASRRLKSEFLIQFDGVTSNPDDLVIIIGATNKPQEL 366 Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADLA 542 D A+ R R + I + +PD+ R + + K D D+ +I E+ G+ G+DL Sbjct: 367 DDAVLR--RLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSDGDIDKIVKETEGYSGSDLQ 424 Query: 543 SLCSEAALQQIRE 581 +LC EAA+ IRE Sbjct: 425 ALCEEAAMMPIRE 437 >At2g34560.2 68415.m04246 katanin, putative similar to katanin p60 subunit [Strongylocentrotus purpuratus] GI:3098603; contains Pfam profile PF00004: ATPase AAA family Length = 393 Score = 138 bits (334), Expect = 4e-33 Identities = 73/205 (35%), Positives = 125/205 (60%), Gaps = 4/205 (1%) Frame = +3 Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194 P +GIL++GPPGTGKT++A+AVA E FF I+ ++SK G+SE +R F+ A + Sbjct: 144 PWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHH 203 Query: 195 SPAIIFIDELDAIAPKR---EKTHGEVERRIVSQLLTLMDGMKKSSH-VIVMAATNRPNS 362 +P+ IF+DE+DAI +R ++ E RR+ ++LL MDG++K++ V V+AATN P Sbjct: 204 APSTIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLAATNLPWE 263 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 +D A+ R R ++ I + +PD R + + + + + + +S G+ G+D+ Sbjct: 264 LDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIR 321 Query: 543 SLCSEAALQQIREKMDLIDLEDDQI 617 LC EAA+Q +R + +++ +D + Sbjct: 322 ILCKEAAMQPLRRTLAILEDREDVV 346 >At2g34560.1 68415.m04245 katanin, putative similar to katanin p60 subunit [Strongylocentrotus purpuratus] GI:3098603; contains Pfam profile PF00004: ATPase AAA family Length = 384 Score = 138 bits (334), Expect = 4e-33 Identities = 73/205 (35%), Positives = 125/205 (60%), Gaps = 4/205 (1%) Frame = +3 Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194 P +GIL++GPPGTGKT++A+AVA E FF I+ ++SK G+SE +R F+ A + Sbjct: 135 PWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHH 194 Query: 195 SPAIIFIDELDAIAPKR---EKTHGEVERRIVSQLLTLMDGMKKSSH-VIVMAATNRPNS 362 +P+ IF+DE+DAI +R ++ E RR+ ++LL MDG++K++ V V+AATN P Sbjct: 195 APSTIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLAATNLPWE 254 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 +D A+ R R ++ I + +PD R + + + + + + +S G+ G+D+ Sbjct: 255 LDAAMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIR 312 Query: 543 SLCSEAALQQIREKMDLIDLEDDQI 617 LC EAA+Q +R + +++ +D + Sbjct: 313 ILCKEAAMQPLRRTLAILEDREDVV 337 >At1g79560.1 68414.m09275 FtsH protease, putative contains similarity to chloroplast FtsH protease GI:5804782 from [Nicotiana tabacum] Length = 1008 Score = 135 bits (326), Expect = 3e-32 Identities = 77/215 (35%), Positives = 123/215 (57%), Gaps = 16/215 (7%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESNLRKAFEEADKNS 197 RG+L+ GPPGTGKTL AR +A E+G F +G E S+ +G ++ N + F A +N+ Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAKIN--EMFSIARRNA 584 Query: 198 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH---------VIVMAATN 350 PA +F+DE+DAIA + + R L+ +DG K+ + VI + ATN Sbjct: 585 PAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATN 643 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVG 530 RP+ +D R GR DR + IG+PDA R++I +H+ L +D+D ++ + G G Sbjct: 644 RPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSG 703 Query: 531 ADLASLCSEAALQQIRE------KMDLIDLEDDQI 617 AD+ +L +EAA+ +R+ + D++D+ D Q+ Sbjct: 704 ADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQL 738 >At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar sorting protein-related similar to SP|P46467 SKD1 protein (Vacuolar sorting protein 4b) {Mus musculus}; contains Pfam profiles PF00004: ATPase AAA family, PF04212: MIT domain Length = 435 Score = 134 bits (325), Expect = 4e-32 Identities = 70/196 (35%), Positives = 116/196 (59%), Gaps = 3/196 (1%) Frame = +3 Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191 +P R L+YGPPGTGK+ +A+AVA E + FF ++ +++SK GESE + FE A + Sbjct: 163 RPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARE 222 Query: 192 NSPAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGM-KKSSHVIVMAATNRPNSI 365 ++P+IIF+DE+D++ R E E RRI ++LL M G+ V+V+AATN P ++ Sbjct: 223 SAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYAL 282 Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLG-DDVDLXQIAAESHGHVGADLA 542 D A+RR RFD+ I I +P+A R + ++H + + D + ++ G G+D++ Sbjct: 283 DQAIRR--RFDKRIYIPLPEAKARQHMFKVHLGDTPHNLTEPDFEYLGQKTEGFSGSDVS 340 Query: 543 SLCSEAALQQIREKMD 590 + + +R+ D Sbjct: 341 VCVKDVLFEPVRKTQD 356 >At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus]; contains Pfam domain, PF00004: ATPase, AAA family Length = 287 Score = 126 bits (303), Expect = 2e-29 Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 6/197 (3%) Frame = +3 Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194 P +G+L++GPPGTGKT+I +A+A E A FF I+ + SK GE E +R F A Sbjct: 42 PGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCR 101 Query: 195 SPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGMKK-SSHVIVMAATNRPNSI 365 PA+IF+DE+D++ +R K+ GE E RR+ +Q L M+G S ++++ ATNRP + Sbjct: 102 QPAVIFVDEIDSLLSQR-KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQEL 160 Query: 366 DPALRRFGRFDREIDIGIPDATGRLEILRIHTKN---MKLGDDVDLXQIAAESHGHVGAD 536 D A RR R + + I +P + R I++ K L DD D+ I + G+ G+D Sbjct: 161 DEAARR--RLTKRLYIPLPSSEARAWIIQNLLKKDGLFTLSDD-DMNIICNLTEGYSGSD 217 Query: 537 LASLCSEAALQQIREKM 587 + +L +A + +RE + Sbjct: 218 MKNLVKDATMGPLREAL 234 >At4g04180.1 68417.m00593 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 609 Score = 125 bits (301), Expect = 4e-29 Identities = 72/182 (39%), Positives = 100/182 (54%), Gaps = 1/182 (0%) Frame = +3 Query: 18 PRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK-N 194 PR +L GPPGTGKT AR +AN+ G + +MSK GESE L F +A++ Sbjct: 361 PRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELP 420 Query: 195 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 374 AIIF+DE+DA A R+ E RR++S LL +DG ++ V+V+AATNR +DPA Sbjct: 421 DGAIIFLDEIDAFAISRDSEMHEATRRVLSVLLRQIDGFEQEKKVVVIAATNRKQDLDPA 480 Query: 375 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLASLCS 554 L RFD I +PD R EI+ + K + +L Q+A + G D+ +C Sbjct: 481 L--ISRFDSMIMFDLPDLQTRQEIIAQYAKQL---SKPELVQLAQATEAMSGRDIRDVCQ 535 Query: 555 EA 560 A Sbjct: 536 GA 537 >At1g62130.1 68414.m07010 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 1025 Score = 121 bits (291), Expect = 6e-28 Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 3/209 (1%) Frame = +3 Query: 12 KPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 191 KP GIL++GP GTGKT++A+AVA E GA LIN MS+ E E ++ F A K Sbjct: 768 KPCNGILLFGPSGTGKTMLAKAVATEAGAN--LINMS--MSRWFSEGEKYVKAVFSLASK 823 Query: 192 NSPAIIFIDELDAIAPK-REKTHGEVERRIVSQLLTLMDGMK--KSSHVIVMAATNRPNS 362 SP+IIF+DE++++ + R KT E I++ DG++ + V+V+AATNRP Sbjct: 824 ISPSIIFLDEVESMLHRYRLKTKNEF---IIN-----WDGLRTNEKERVLVLAATNRPFD 875 Query: 363 IDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDDVDLXQIAAESHGHVGADLA 542 +D A+ R R + +G+PDA R +IL++ L D D+ ++A+ ++G+ G DL Sbjct: 876 LDEAVIR--RLPHRLMVGLPDARSRSKILKVILSKEDLSPDFDIDEVASMTNGYSGNDLK 933 Query: 543 SLCSEAALQQIREKMDLIDLEDDQIDARG 629 +LC AA ++I E ++ E D A G Sbjct: 934 NLCVTAARRRIIEIVEKEKSERDAAVAEG 962 >At3g04340.1 68416.m00459 FtsH protease family protein similar to chloroplast FtsH protease [Arabidopsis thaliana] GI:1483215; contains Pfam profiles PF01434: Peptidase family M41, PF00004: ATPase AAA family Length = 960 Score = 96.7 bits (230), Expect = 1e-20 Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 7/178 (3%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL-AGESESNLRKAFE 179 +G + PRG+L+ G GTGKT +A A+A E + E+ + L G+S +N+R+ F+ Sbjct: 452 MGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSAANVRELFQ 511 Query: 180 EADKNSPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGMKKSSHVIVMAATN 350 A +P IIF+++ D A R K T + ++QLL +DG +K V++MA T Sbjct: 512 TARDLAPVIIFVEDFDLFAGVRGKFVHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 571 Query: 351 RPNSIDPALRRFGRFDREIDIGIPDATGRLEILR---IHTKNMKLGDDVDLXQIAAES 515 ID ALRR GR DR + P R IL T + +L D VD +++ ++ Sbjct: 572 NHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRELVDLVDWRKVSEKT 629 >At2g18330.1 68415.m02136 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family associated with various cellular activities (AAA) Length = 636 Score = 93.5 bits (222), Expect = 1e-19 Identities = 49/158 (31%), Positives = 88/158 (55%), Gaps = 1/158 (0%) Frame = +3 Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK- 191 P R ++ YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A K Sbjct: 384 PFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 442 Query: 192 NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371 N ++FIDE DA +R T+ +R L G +S ++++ ATNRP +D Sbjct: 443 NKGLLLFIDEADAFLCERNSTYMSEAQRSALNALLFRTG-DQSRDIVLVLATNRPGDLDS 501 Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDD 485 A+ R D I+ +P R ++L+++ +GDD Sbjct: 502 AVT--DRIDEVIEFPLPGEEERFKLLKLYLNKYLMGDD 537 >At4g36580.1 68417.m05193 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 620 Score = 88.2 bits (209), Expect = 5e-18 Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 2/159 (1%) Frame = +3 Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK- 191 P R ++ YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A K Sbjct: 369 PFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGSQAVTKIHQIFDWAKKS 427 Query: 192 NSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371 N ++FIDE DA +R T+ +R L G +S ++++ ATNR +D Sbjct: 428 NKGLLLFIDEADAFLCERNSTYMSEAQRSALNALLFRTG-DQSRDIVLVLATNRRGDLDS 486 Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIH-TKNMKLGDD 485 A+ R D I+ +P R ++L ++ K +K+GD+ Sbjct: 487 AVT--DRIDEVIEFPLPGEEERFKLLNLYLNKYLKMGDN 523 >At5g16930.1 68418.m01984 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 644 Score = 84.6 bits (200), Expect = 6e-17 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 1/149 (0%) Frame = +3 Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194 P R IL YGPPGTGKT+ AR +A +G + L+ G ++ + L ++ + + + F+ + K+ Sbjct: 397 PFRNILFYGPPGTGKTMAARELARRSGLDYALMTGGDV-APLGAQAVTKIHQLFDWSKKS 455 Query: 195 SPA-IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371 ++FIDE DA +R KT+ +R L G +S +++ ATNRP +D Sbjct: 456 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDS 514 Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIH 458 A+ R D ++ +P R ++L ++ Sbjct: 515 AVA--DRIDETLEFPLPGEEERFKLLNLY 541 >At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017 Length = 639 Score = 82.6 bits (195), Expect = 3e-16 Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 1/149 (0%) Frame = +3 Query: 15 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 194 P R IL++GPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ K+ Sbjct: 396 PFRNILLHGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGAQAVTKIHELFDWGKKS 454 Query: 195 SPA-IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDP 371 ++FIDE DA +R KT+ +R L G +S +++ ATNRP +D Sbjct: 455 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDS 513 Query: 372 ALRRFGRFDREIDIGIPDATGRLEILRIH 458 A+ R D ++ +P R ++L ++ Sbjct: 514 AVA--DRVDEVLEFPLPGEEERFKLLNLY 540 >At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to HPV16 E1 protein binding protein [Homo sapiens] gi|2232019|gb|AAB64095; contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 467 Score = 61.7 bits (143), Expect = 5e-10 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 18/162 (11%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 173 R IL++GPPGTGKT + +A+A + +N + SK ES + K Sbjct: 203 RIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKWFSESGKLVAKL 262 Query: 174 FEE-----ADKNSPAIIFIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGMKKSSH 326 F++ + + + IDE++++A R+ E R+V+ LLT MD +K + + Sbjct: 263 FQKIQEMVEEDGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSAPN 322 Query: 327 VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILR 452 VI++ +N +ID A R D + +G P R EILR Sbjct: 323 VIILTTSNITTAIDVAF--VDRADIKAYVGPPTLHVRYEILR 362 >At5g17760.1 68418.m02082 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 505 Score = 56.0 bits (129), Expect = 3e-08 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G RG L+YGPPGTGK+ + A+AN + + +M +S+LR+ Sbjct: 248 VGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVYDLQLASVM------RDSDLRRLL-L 300 Query: 183 ADKNSPAIIFIDELDAIA--------PKREKTHGEVERRI-VSQLLTLMDGMKKS--SHV 329 A +N +I+ I+++D P K GE + + +S LL +DG+ S Sbjct: 301 ATRNR-SILVIEDIDCAVDLPNRIEQPVEGKNRGESQGPLTLSGLLNFIDGLWSSCGDER 359 Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIG 416 I++ TN + +DPAL R GR D I +G Sbjct: 360 IIIFTTNHKDRLDPALLRPGRMDMHIYMG 388 >At5g17730.1 68418.m02079 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 470 Score = 55.6 bits (128), Expect = 3e-08 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G RG L+YGPPGTGKT + A+AN F I ++ S +++LR+ Sbjct: 240 VGKPWKRGYLLYGPPGTGKTSLVAAIAN---YLKFDIYDLQLASV---REDADLRRLLLG 293 Query: 183 ADKNSPAIIFIDELDA-------IAPKREKTHGEVERRIVSQLLTLMDGMKKS--SHVIV 335 +S I+ ++++D + PK + +S LLT +DG+ S IV Sbjct: 294 TTNSS--ILLVEDIDCAVDLHTRLQPKTQDDTKGSSMLTLSGLLTCIDGLWSSCGDERIV 351 Query: 336 MAATNRPNSIDPALRRFGRFDREIDIG 416 + T +DPAL R GR D I +G Sbjct: 352 IFTTTHKERLDPALLRPGRMDMHIHMG 378 >At2g18190.1 68415.m02116 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 494 Score = 53.6 bits (123), Expect = 1e-07 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 8/145 (5%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFF------LINGPEIMSKLAGESESNL 164 +G RG L+YGPPGTGK+ + A+AN F + ++ S L + ++ Sbjct: 239 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELSSIYENAQLKSILLSTTNRSI 298 Query: 165 RKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKS--SHVIVM 338 E+ D +S ++ E D E +G V +S LL +DG+ S I++ Sbjct: 299 -LVIEDIDCSSAEVV-DREADEYQEYEEGYYGRV---TLSGLLNFVDGLWSSFGDERIIV 353 Query: 339 AATNRPNSIDPALRRFGRFDREIDI 413 TN +DPAL R GR D I++ Sbjct: 354 FTTNHKERLDPALLRPGRMDMHINM 378 >At4g05380.1 68417.m00820 AAA-type ATPase family protein contains similarity to mitochondrial ATPase (AAA family) Bcs1p, Saccharomyces cerevisiae, Swiss Prot:P32839 Length = 248 Score = 52.8 bits (121), Expect = 2e-07 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 20/177 (11%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200 RG L+YGPPGTGK+ + A+AN + I +I S + ++ LR+ + S Sbjct: 32 RGYLLYGPPGTGKSSLVAAIANFMN---YSIYDLQIQSV---KDDAMLRQILTSTENRS- 84 Query: 201 AIIFIDELDAIAP--------KREKTHGEVERR--------IVSQLLTLMDGMKKS--SH 326 I+ I++LD K E +GE + + +S LL +DG+ S Sbjct: 85 -ILLIEDLDCSGADTTCRKENKDETEYGENQNKKKKKDPKVTLSGLLNFVDGLWSSCVEE 143 Query: 327 VIVMAATNRPNSIDPALRRFGRFDREI--DIGIPDATGRLEILRIHTKNMKLGDDVD 491 I++ TN +DPAL R GR D I D P +L L + + +L D ++ Sbjct: 144 RIIIFTTNHKEKLDPALLRPGRMDVHILMDYCTPIVFKKLAALYLEIEEHELFDPIE 200 >At3g50940.1 68416.m05577 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 451 Score = 52.4 bits (120), Expect = 3e-07 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 8/143 (5%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G RG L+YGPPGTGK+ + A+AN + ++ ++ L +E LR+ Sbjct: 242 VGKAWKRGYLLYGPPGTGKSSLIAAIANHLNFDIYDLD----LTSLNNNAE--LRRLLMS 295 Query: 183 ADKNSPAIIFIDELD-AIAPKREKTHGE----VERRI-VSQLLTLMDGMKKS--SHVIVM 338 S I+ ++++D +I K T E + + + +S LL +DG+ S + I++ Sbjct: 296 TANRS--ILVVEDIDCSIELKDRSTDQENNDPLHKTVTLSGLLNFVDGLWSSCGNERIIV 353 Query: 339 AATNRPNSIDPALRRFGRFDREI 407 TN +DPAL R GR D I Sbjct: 354 FTTNYREKLDPALLRPGRMDMHI 376 >At2g18193.1 68415.m02117 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 495 Score = 52.0 bits (119), Expect = 4e-07 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G RG L+YGPPGTGK+ + A+AN F + +S + E L++ Sbjct: 238 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLE----LSSIYDNGE--LKRVLLS 291 Query: 183 ADKNSPAIIFIDELDAIAPKREK-THGEVERRI-----VSQLLTLMDGMKKS--SHVIVM 338 S I+ I+++D A R++ + + +I +S +L +DG+ S I++ Sbjct: 292 TTNRS--ILVIEDIDCNAEVRDREAENQEDEQIKGKVTLSGILNFIDGLWSSFGDERIIV 349 Query: 339 AATNRPNSIDPALRRFGRFDREIDI 413 TN +DPAL R GR D I++ Sbjct: 350 FTTNHKERLDPALLRPGRMDVHINM 374 >At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849 contains Pfam profile: ATPase family PF00004 gene_id:K17E7.100 contains Pfam profile: ATPase family PF00004 Length = 533 Score = 50.8 bits (116), Expect = 9e-07 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 14/152 (9%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G RG L+YGPPGTGK+ + A+AN F I ++ S + +++LR Sbjct: 240 VGKAWKRGYLLYGPPGTGKSSLVAAMAN---YLKFDIYDLQLASV---QGDAHLRSLL-- 291 Query: 183 ADKNSPAIIFIDELDA-------IAPKREKTH--GEVE---RRIVSQLLTLMDGMKKS-- 320 N+ +I+ I+++D + P E + G V+ +S LL +DG+ S Sbjct: 292 LATNNSSILLIEDIDCSVDLPTRLQPPTETSQPLGAVQVSKPLTLSGLLNCIDGLWSSCG 351 Query: 321 SHVIVMAATNRPNSIDPALRRFGRFDREIDIG 416 + I++ TN +DPAL R GR D I +G Sbjct: 352 NERIIIFTTNNKEKLDPALLRPGRMDMHIYMG 383 >At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuclear gene encoding mitochondrial protein - Homo sapiens, EMBL:AF026849 contains Pfam profile: ATPase family PF00004 Length = 470 Score = 50.4 bits (115), Expect = 1e-06 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 16/153 (10%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IG RG L+YGPPGTGK+ + A+AN + I E+ A ++ S L+K Sbjct: 236 IGKAWKRGYLLYGPPGTGKSTMISAMAN---LLNYNIYDLEL---TAVKNNSELKKLLTA 289 Query: 183 ADKNSPAIIFIDELDAIAP------KRE----KTHGEVERR----IVSQLLTLMDGMKKS 320 +S +II I+++D A K+E + +G+ ++ +S LL +DG+ + Sbjct: 290 T--SSKSIIVIEDIDCSADFTSNRIKKESNSRERYGKEDKDENSVTLSGLLNFIDGIWSA 347 Query: 321 --SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413 IV+ TN +DPAL R GR D I++ Sbjct: 348 CGQERIVVFTTNHLEKLDPALIRRGRMDMHIEL 380 >At3g50930.1 68416.m05576 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 576 Score = 49.2 bits (112), Expect = 3e-06 Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 14/149 (9%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G RG L+YGPPGTGK+ + A+AN F I E+ A + S LR+ Sbjct: 294 VGKAWKRGYLLYGPPGTGKSSLIAAMANHLN---FDIYDLEL---TAVNNNSELRRLLIA 347 Query: 183 ADKNSPAIIFIDELDAIAPKREKTHGEVERR------------IVSQLLTLMDGMKKS-- 320 S I+ ++++D +++T E R +S LL +DG+ S Sbjct: 348 TANRS--ILIVEDIDCSLELKDRTSDEPPRESDDIEDPRYKKVTLSGLLNFIDGLWSSCG 405 Query: 321 SHVIVMAATNRPNSIDPALRRFGRFDREI 407 I++ TN +D AL R GR D I Sbjct: 406 DERIIIFTTNYKEKLDAALLRPGRMDMHI 434 >At1g43910.1 68414.m05066 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 475 Score = 48.8 bits (111), Expect = 4e-06 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 29/232 (12%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200 RG L+YGPPGTGK+ + A+AN + I +I S + LR+ S Sbjct: 240 RGYLLYGPPGTGKSSMVAAIANH---MKYHIYDLQIQSV---RDDGELREILTSTKNRS- 292 Query: 201 AIIFIDELD--AIAPKREKT----------HGEVERR--------IVSQLLTLMDGMKKS 320 I+ I+++D A A +R ++ GE ++R +S LL +DG+ S Sbjct: 293 -ILLIEDIDCGADASRRRQSKKKEEDGGEDDGEPQKRKKKFEVGISLSGLLNFVDGLWSS 351 Query: 321 --SHVIVMAATNRPNSIDPALRRFGRFDREI--DIGIPDATGRLEILRIHTKNMKLGDDV 488 I++ TN +DPAL R GR D I D P +L L + T L D + Sbjct: 352 CGEEKIIIFTTNHKEKLDPALLRPGRMDVHILMDNCTPFVFKKLVALYLKTDEHVLFDPI 411 Query: 489 D--LXQIAAESHGHVGADLASLCSEAALQQIREKMDLIDL---EDDQIDARG 629 + + ++++ +AS ++ AL+ + E ++ L ED ++ G Sbjct: 412 EKLILEVSSTPAEVTQQLMASKNADIALKGLAEFLENKKLKKGEDSSVEEEG 463 >At3g28600.1 68416.m03570 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 475 Score = 48.0 bits (109), Expect = 7e-06 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 19/156 (12%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IG RG L++GPPGTGK+ + A+AN + I E+ A + S LRK Sbjct: 231 IGKAWKRGYLLHGPPGTGKSTMIAAMANHLN---YSIYDLEL---TAIRNNSELRKLLTA 284 Query: 183 ADKNSPAIIFIDELDA---IAPKREKTHGEVERR--------------IVSQLLTLMDGM 311 +S +II I+++D + KR+K + R +S LL +DG+ Sbjct: 285 T--SSKSIIVIEDIDCSLDLTGKRKKEKNLMTSREDGEQGTEEDKSFVTLSGLLNFIDGI 342 Query: 312 KKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413 + I++ TN +DPAL R GR D I++ Sbjct: 343 WSACGQERIIIFTTNHFEKLDPALIRRGRMDMHIEL 378 >At4g30250.1 68417.m04301 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 512 Score = 47.6 bits (108), Expect = 9e-06 Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 23/155 (14%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200 RG L+YGPPGTGK+ + A+AN G + + E+ ++ S LRK + +S Sbjct: 239 RGYLLYGPPGTGKSSLIAAMANYLGYDIYDLELTEV------QNNSELRKLLMKT--SSK 290 Query: 201 AIIFIDELDAIAP-----KREKTHGEVE----------------RRIVSQLLTLMDGMKK 317 +II I+++D K +K +G E +S LL DG+ Sbjct: 291 SIIVIEDIDCSISLTKRGKNKKKNGSYEYDPGLTNGSGLEEPGSSVTLSGLLNFTDGLWS 350 Query: 318 --SSHVIVMAATNRPNSIDPALRRFGRFDREIDIG 416 S I + TN +D AL R GR D + +G Sbjct: 351 CCGSEKIFVFTTNHIEKLDSALMRSGRMDMHVHMG 385 >At3g28610.1 68416.m03571 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 473 Score = 47.6 bits (108), Expect = 9e-06 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 20/157 (12%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IG RG L+YGPPGTGK+ + A+AN + I E+ A ++ S LRK Sbjct: 231 IGKAWKRGYLLYGPPGTGKSTMIAAMAN---LLNYSIYDLEL---TAIQNNSELRKILTA 284 Query: 183 ADKNSPAIIFIDELDA---IAPKREKTH---------GEVERR------IVSQLLTLMDG 308 S II I+++D + KR+K G+ + +S LL +DG Sbjct: 285 TSNKS--IIVIEDIDCSLDLTGKRKKKESNLMIWRKDGDQDNEENKSFVTLSGLLNFIDG 342 Query: 309 MKKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413 + + I++ TN +DPAL R GR D I++ Sbjct: 343 IWSACGQERIIVFTTNHLAKLDPALIRRGRMDMHIEL 379 >At3g28510.1 68416.m03561 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family Length = 530 Score = 46.4 bits (105), Expect = 2e-05 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 26/163 (15%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G RG L++GPPGTGK+ + A+AN FL + + S L+K Sbjct: 238 VGKPWKRGYLLFGPPGTGKSTMIAAIAN------FLDYDVYDLELTTVKDNSELKKLL-- 289 Query: 183 ADKNSPAIIFIDELDA---IAPKR-------------EKTHGEVERRI--------VSQL 290 D S +II I+++D + +R EK GE + ++ +S L Sbjct: 290 LDTTSKSIIVIEDIDCSLDLTGQRKKKKEEDEEEDGEEKKEGEKKPKVDDKQSKVTLSGL 349 Query: 291 LTLMDGMKK--SSHVIVMAATNRPNSIDPALRRFGRFDREIDI 413 L +DG+ S I++ TN + +DPAL R GR D I++ Sbjct: 350 LNSIDGLWSACSGEKIIVFTTNFVDKLDPALIRRGRMDNHIEM 392 >At3g28520.1 68416.m03562 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 478 Score = 45.2 bits (102), Expect = 5e-05 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 25/183 (13%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200 RG L++GPPGTGK+ + A+AN FL + + + L+K D Sbjct: 229 RGYLLFGPPGTGKSTMISAIAN------FLEYDVYDLELTTVKDNAELKKLM--LDTKGK 280 Query: 201 AIIFIDELDAI--------------APKREKTHGEVERRI---------VSQLLTLMDGM 311 +I+ I+++D K EK E +R+ +S LL +DG+ Sbjct: 281 SIVVIEDIDCSLELTEHRKKKKEEDEDKEEKKEAENLKRVSGNNESNVTLSGLLNAIDGL 340 Query: 312 KK--SSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGDD 485 S I++ TN +++DPAL R GR D I++ + R E ++ KN + Sbjct: 341 WSACSDEKIIIFTTNFVDNLDPALIRRGRMDYHIEM----SYCRFEAFKVLAKNYLENES 396 Query: 486 VDL 494 DL Sbjct: 397 HDL 399 >At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX) identical to CLP protease regulatory subunit CLPX GI:2674203 from [Arabidopsis thaliana] Length = 579 Score = 44.4 bits (100), Expect = 8e-05 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 9/103 (8%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEADKNSP 200 IL+ GP G+GKTL+A+ +A F + + + + GE ES L K AD N Sbjct: 226 ILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVA 285 Query: 201 A----IIFIDELDAIAPKREKTH--GEVERRIVSQ-LLTLMDG 308 A I++IDE+D I K E + +V V Q LL +++G Sbjct: 286 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 328 >At3g28570.1 68416.m03567 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 451 Score = 44.0 bits (99), Expect = 1e-04 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 9/146 (6%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IG RG L+YGPPGTGK+ + A+AN + I E+ S G + + Sbjct: 231 IGKAWKRGYLLYGPPGTGKSTMIAAMAN---LMKYNIYDLELTS--IGNNWELKKLLIAT 285 Query: 183 ADKNSPAIIFID-ELDAIAPKREK-THGEVERR-----IVSQLLTLMDGMKKS--SHVIV 335 +K+ I ID LD + K G+ E + +S LL +DG+ + I+ Sbjct: 286 TNKSIIVIEDIDCSLDLTGEREVKDLKGDKEGKKSNAVTLSGLLNFIDGIWSACGQERIL 345 Query: 336 MAATNRPNSIDPALRRFGRFDREIDI 413 + TN +D AL R GR D I++ Sbjct: 346 VFTTNHVGKLDQALIRRGRMDMHIEL 371 >At3g28540.1 68416.m03564 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 510 Score = 42.7 bits (96), Expect = 3e-04 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 24/179 (13%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVAN--ETGAFFFLING-------PEIMSKLAGES- 152 +G RG L++GPPGTGK+ + A+AN E + + ++M G+S Sbjct: 234 VGKPWKRGYLLFGPPGTGKSTMISAMANFLEYDVYDLELTTVKDNSELKKLMLDTKGKSI 293 Query: 153 ------ESNL-----RKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLT 296 + +L RK +E D++ E + + KRE+ GE E ++ +S LL Sbjct: 294 VVIEDIDCSLDLTGQRKKKKEEDEDEEEEEKKKEAEKLL-KRER--GERESKVTLSGLLN 350 Query: 297 LMDGMKK--SSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKN 467 +DG+ S I++ TN + +DPAL R GR D I++ + R E ++ KN Sbjct: 351 AIDGLWSACSGEKIIVFTTNYLDKLDPALIRRGRMDNHIEM----SYCRFEAFKVLAKN 405 >At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding subunit ClpX, putative similar to CLP protease regulatory subunit CLPX GI:2674203 from [Arabidopsis thaliana] Length = 656 Score = 42.7 bits (96), Expect = 3e-04 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 9/103 (8%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESNLRKAFEEADKNSP 200 +L+ GP G+GKTL+A+ +A F + + + + + ES L K A+ N Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVAEFNVQ 370 Query: 201 A----IIFIDELDAIAPKREKTH--GEVERRIVSQ-LLTLMDG 308 A I++IDE+D I K E + +V V Q LL L++G Sbjct: 371 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEG 413 >At5g40010.1 68418.m04852 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 514 Score = 42.3 bits (95), Expect = 3e-04 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 19/156 (12%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVAN--ETGAF---FFLINGPEIMSKLAGESESNLR 167 IG RG L++GPPGTGK+ + A+AN E + + + +L E+ Sbjct: 238 IGKAWKRGYLLFGPPGTGKSTMIAAMANLLEYDVYDLELTTVKDNTELRRLLIETSGKSI 297 Query: 168 KAFEEAD----------KNSPAIIFIDELDAIAPKREKTHGEVE--RRIVSQLLTLMDGM 311 E+ D + DE I + +K GE + + +S LL +DG+ Sbjct: 298 IVIEDIDCSLDLTGQRKQKKDEEEDEDETSPIEKQMKKDQGENKGSKVTLSGLLNFIDGL 357 Query: 312 KKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413 + I++ TN + +DPAL R GR D+ I++ Sbjct: 358 WSACGGERIIVFTTNFIDKLDPALIRKGRMDKHIEM 393 >At4g25835.1 68417.m03716 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family Length = 506 Score = 42.3 bits (95), Expect = 3e-04 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 24/153 (15%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200 RG L+YGPPGTGK+ + A+AN + + E+ +S S LRK + +S Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLRYDIYDLELTEV------KSNSELRKLLMKT--SSK 289 Query: 201 AIIFIDELDAI-----APKREKTH-----------------GEVERRIVSQLLTLMDGMK 314 +II I+++D K++ T G+ +S LL DG+ Sbjct: 290 SIIVIEDIDCSINLTNRNKKQSTGSYNEPEMLTGSGLGDDLGDGNTITLSGLLNFTDGLW 349 Query: 315 K--SSHVIVMAATNRPNSIDPALRRFGRFDREI 407 S I + TN +DPAL R GR D I Sbjct: 350 SCCGSERIFVFTTNHIEKLDPALLRSGRMDMHI 382 >At5g57480.1 68418.m07183 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family Length = 520 Score = 41.9 bits (94), Expect = 4e-04 Identities = 26/69 (37%), Positives = 39/69 (56%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200 RG L+YGPPGTGK+ + A+AN G + + E+ S S LRK + +S Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEV------HSNSELRKLLMKT--SSK 289 Query: 201 AIIFIDELD 227 +II I+++D Sbjct: 290 SIIVIEDID 298 >At3g28580.1 68416.m03568 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 500 Score = 41.9 bits (94), Expect = 4e-04 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 28/165 (16%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 IG RG L++GPPGTGK+ + A+AN FL + + ++LR+ E Sbjct: 235 IGKAWKRGYLLFGPPGTGKSTMIAAMAN------FLEYDVYDLELTTVKDNTHLRRLLIE 288 Query: 183 ADKNSPAIIFIDELDA---IAPKREKTHGE---------VERRI--------------VS 284 S II I+++D + +R+K E +E+++ +S Sbjct: 289 TSAKS--IIVIEDIDCSLNLTGQRKKKEEEEEDGDDKNTIEKKMMMKNEGENKESKVTLS 346 Query: 285 QLLTLMDGMKKS--SHVIVMAATNRPNSIDPALRRFGRFDREIDI 413 LL +DG+ + I++ TN + +DPAL R GR D+ I++ Sbjct: 347 GLLNFIDGLWSACGGERIIVFTTNFVDKLDPALIRKGRMDKHIEM 391 >At5g17750.1 68418.m02081 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 392 Score = 41.5 bits (93), Expect = 6e-04 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 +G R +YGPPGTGK+ + A+AN + + ++ + G+++ LR Sbjct: 215 VGKAWKRSYFLYGPPGTGKSSLVAAMANYLKFDIYDLQ----LANVQGDAQ--LRSLL-- 266 Query: 183 ADKNSPAIIFIDELDAIA--PKR----EKTHGEVERR---IVSQLLTLMDGMKKS--SHV 329 N+ +I+ ++++D P R T G + +S LL +DG+ S Sbjct: 267 LATNNSSILLVEDIDCSVDLPTRLQPATTTLGAPKGSTPLTLSGLLNCIDGLWSSCGDER 326 Query: 330 IVMAATNRPNSIDPALRRFGRFDREIDIG 416 IV+ TN +DPAL R G D I +G Sbjct: 327 IVIFTTNNKEVLDPALLRPGCMDMHIYLG 355 >At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin repeat family protein contains Pfam profiles: PF00023 ankyrin repeat, PF00004 ATPase family associated with various cellular activities (AAA) Length = 481 Score = 41.1 bits (92), Expect = 8e-04 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFL-------INGPEIMSKLAGESESN 161 IG + P + G PGTGKT++AR + L + +++ + G + Sbjct: 240 IGTRRPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDLVGEFVGHTGPK 299 Query: 162 LRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMA 341 R+ +EA+ I+F+DE + P ++ + + +++++MD K V++ A Sbjct: 300 TRRKIQEAE---GGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGK---IVVIFA 353 Query: 342 ATNRP 356 + P Sbjct: 354 GYSEP 358 >At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding subunit ClpX, putative similar to CLP protease regulatory subunit CLPX GI:2674203 from [Arabidopsis thaliana]; non-consensus splice donor GC at exon 4; non-consensus splice donor AA at exon 7 Length = 606 Score = 40.3 bits (90), Expect = 0.001 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 9/103 (8%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFE----EAD 188 +L+ GP G+GKTL+A+ +A F + + + + GE ES L K + + Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVVSGCNVE 324 Query: 189 KNSPAIIFIDELDAIAPKREKTHG--EVERRIVSQ-LLTLMDG 308 + I++IDE+D + K ++G +V V Q LL L++G Sbjct: 325 EAQRGIVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEG 367 >At5g22330.1 68418.m02605 TATA box-binding protein-interacting protein-related similar to TATA box-binding protein-interacting protein SP:O35753 from [ Mus musculus] Length = 458 Score = 37.9 bits (84), Expect = 0.007 Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 5/108 (4%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAFEEA 185 + +L+ GPPGTGKT +A ++ E G+ F + G E+ S ++E N R+A Sbjct: 67 KALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLR 126 Query: 186 DKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329 K + ++ E+ ++P+ ++ + +S ++ + +K + H+ Sbjct: 127 IKETKE-VYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHL 173 >At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-like DNA helicase reptin [Danio rerio] GI:27733814, reptin [Drosophila melanogaster] GI:7243682 Length = 469 Score = 37.5 bits (83), Expect = 0.009 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA 185 R IL+ G PGTGKT IA +A G F +I G EI S ++E+ L ++F +A Sbjct: 67 RAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEA-LTQSFRKA 122 >At3g49830.1 68416.m05448 DNA helicase-related similar to DNA helicase GI:4521249 from [Mus musculus] Length = 473 Score = 37.1 bits (82), Expect = 0.012 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA 185 R IL+ G PGTGK IA +A G F +I G EI S ++E+ L +AF +A Sbjct: 67 RAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEA-LTQAFRKA 122 >At5g17760.2 68418.m02083 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 341 Score = 36.7 bits (81), Expect = 0.016 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVAN 86 +G RG L+YGPPGTGK+ + A+AN Sbjct: 248 VGKAWKRGYLLYGPPGTGKSSLVAAMAN 275 >At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding subunit / ClpC almost identical to ClpC GI:2921158 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain; contains Pfam profile PF00004: ATPase, AAA family; contains Pfam profile PF02151: UvrB/uvrC motif Length = 929 Score = 36.3 bits (80), Expect = 0.022 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 12/89 (13%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAG 146 +G + + G PG GKT IA +A +G I G ++++ K G Sbjct: 290 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRG 349 Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAI 233 E E L+K EE ++ I+FIDE+ + Sbjct: 350 EFEERLKKLMEEIRQSDEIILFIDEVHTL 378 >At2g46620.1 68415.m05815 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 491 Score = 36.3 bits (80), Expect = 0.022 Identities = 35/137 (25%), Positives = 60/137 (43%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 200 R L+YGP GTGK+ A+AN + I+ +SK+ +S+ + Sbjct: 232 RSYLLYGPSGTGKSSFVAAMANFLDYDVYDID----LSKVVDDSDLKMLL----LQTRGK 283 Query: 201 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALR 380 ++I I++LD K+ I++ +++ ++V T + IDPA+ Sbjct: 284 SVIVIEDLD--RHLSTKSTAVNLSGILNFTDSILSSCTADERIMVFTMTGK-EQIDPAML 340 Query: 381 RFGRFDREIDIGIPDAT 431 R GR D I + D T Sbjct: 341 RPGRVDVHIHFPLCDFT 357 >At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9 (CPK9) identical to calmodulin-domain protein kinase CDPK isoform 9 [Arabidopsis thaliana] gi|1399265|gb|AAB03242 Length = 541 Score = 35.9 bits (79), Expect = 0.029 Identities = 22/77 (28%), Positives = 33/77 (42%) Frame = +3 Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326 ES NL KAF+ DK+S I IDEL++ + + ++S + + DG Sbjct: 464 ESNENLYKAFQHFDKDSSGYITIDELESALKEYGMGDDATIKEVLSDVDSDNDGRINYEE 523 Query: 327 VIVMAATNRPNSIDPAL 377 M + P P L Sbjct: 524 FCAMMRSGNPQQQQPRL 540 >At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding subunit (ClpC) identical to AtClpC GI:5360574 from [Arabidopsis thaliana]; contains Pfam profiles PF02861: Clp amino terminal domain and PF02151: UvrB/uvrC motif Length = 952 Score = 35.1 bits (77), Expect = 0.050 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%) Frame = +3 Query: 33 MYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAF 176 + G PG GKT IA +A +G I G +++ K GE E L+K Sbjct: 321 LIGEPGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLM 380 Query: 177 EEADKNSPAIIFIDELDAI 233 EE ++ I+FIDE+ + Sbjct: 381 EEIRQSDEIILFIDEVHTL 399 >At1g67120.1 68414.m07636 midasin-related similar to Midasin (MIDAS-containing protein) (Swiss-Prot:Q12019) [Saccharomyces cerevisiae]; similar to Midasin (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo sapiens]; contains Prosite PS00017: ATP/GTP-binding site motif A (P-loop) Length = 5336 Score = 34.7 bits (76), Expect = 0.066 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETG 95 + V R +L+YGP G+GK+ + R +A+E+G Sbjct: 348 LAVSQKRPVLLYGPSGSGKSALIRKLADESG 378 >At2g41860.2 68415.m05174 calcium-dependent protein kinase, putative / CDPK, putative similar to calmodulin-domain protein kinase CDPK isoform 7 [Arabidopsis thaliana] gi|1399277|gb|AAB03247 Length = 530 Score = 33.9 bits (74), Expect = 0.12 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +3 Query: 150 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDG 308 ++ +L+KAF DKN I I+EL DA+A + T EV I+ + T DG Sbjct: 428 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAIILDVDTNKDG 481 >At2g41860.1 68415.m05173 calcium-dependent protein kinase, putative / CDPK, putative similar to calmodulin-domain protein kinase CDPK isoform 7 [Arabidopsis thaliana] gi|1399277|gb|AAB03247 Length = 425 Score = 33.9 bits (74), Expect = 0.12 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +3 Query: 150 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDG 308 ++ +L+KAF DKN I I+EL DA+A + T EV I+ + T DG Sbjct: 323 NDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAIILDVDTNKDG 376 >At1g21690.2 68414.m02715 replication factor C 37 kDa, putative Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains Pfam domain, PF00004: ATPase, AAA family Length = 327 Score = 33.5 bits (73), Expect = 0.15 Identities = 13/21 (61%), Positives = 17/21 (80%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANE 89 +L YGPPGTGKT A A+A++ Sbjct: 33 MLFYGPPGTGKTTTALAIAHQ 53 >At1g21690.1 68414.m02714 replication factor C 37 kDa, putative Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains Pfam domain, PF00004: ATPase, AAA family Length = 339 Score = 33.5 bits (73), Expect = 0.15 Identities = 13/21 (61%), Positives = 17/21 (80%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANE 89 +L YGPPGTGKT A A+A++ Sbjct: 45 MLFYGPPGTGKTTTALAIAHQ 65 >At1g06720.1 68414.m00714 expressed protein contains Pfam domain, PF04950: Protein of unknown function (DUF663) Length = 1147 Score = 33.1 bits (72), Expect = 0.20 Identities = 19/68 (27%), Positives = 32/68 (47%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 185 G PP +++ GPPG GK+L+ +++ E F N PE+ + R F E Sbjct: 79 GEAPPFVVVVQGPPGVGKSLVIKSLVKE----FTKQNVPEVRGPITIVQGKQRRFQFVEC 134 Query: 186 DKNSPAII 209 + A++ Sbjct: 135 PNDINAMV 142 >At4g21880.1 68417.m03164 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 845 Score = 32.7 bits (71), Expect = 0.27 Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Frame = +3 Query: 288 LLTLMDGMKKSSHVIVMAATNRPNS-IDPALRRFGRFDREIDIGIPDATGRLEILRIHTK 464 L L DG++ S++I AT PNS ++ A+ +F + E+DI +P +T ++ Sbjct: 285 LSILQDGVETVSNLIFSYATCIPNSTVEDAIFKFNKLHEELDI-VPSSTSYENLVSYLCG 343 Query: 465 NMKLGDDVDLXQIAAESHGHVGADLASLCSEAALQQIRE 581 + ++ +D+ + E+ + A++ + A++QI E Sbjct: 344 SNEVVTALDIVENMCEAGLVISANILHSLLQ-AIEQILE 381 >At3g30842.1 68416.m03968 ABC transporter protein, putative similar to pleiotropic drug resistance like protein [Nicotiana tabacum] GI:20522008, ABC1 protein [Nicotiana plumbaginifolia] GI:14331118; contains Pfam profile PF00005: ABC transporter Length = 1406 Score = 32.7 bits (71), Expect = 0.27 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANET 92 +KP R L+ GPPG+GK+ + +A++ +T Sbjct: 169 IKPGRLTLLLGPPGSGKSTLLKALSGKT 196 >At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activase identical to SWISS-PROT:P10896 ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA)[Arabidopsis thaliana] Length = 441 Score = 32.7 bits (71), Expect = 0.27 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 185 +K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA Sbjct: 155 IKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214 Query: 186 ---DKNSPAIIFIDELDA 230 K +FI++LDA Sbjct: 215 DLIKKGKMCCLFINDLDA 232 >At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activase identical to SWISS-PROT:P10896 ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA)[Arabidopsis thaliana] Length = 446 Score = 32.7 bits (71), Expect = 0.27 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 185 +K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA Sbjct: 155 IKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214 Query: 186 ---DKNSPAIIFIDELDA 230 K +FI++LDA Sbjct: 215 DLIKKGKMCCLFINDLDA 232 >At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activase identical to SWISS-PROT:P10896 ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA)[Arabidopsis thaliana] Length = 474 Score = 32.7 bits (71), Expect = 0.27 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 185 +K P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA Sbjct: 155 IKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 214 Query: 186 ---DKNSPAIIFIDELDA 230 K +FI++LDA Sbjct: 215 DLIKKGKMCCLFINDLDA 232 >At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to Werner helicase interacting protein [Homo sapiens] GI:14349166; contains Pfam profiles PF00004: ATPase family associated with various cellular activities (AAA), PF00627: UBA/TS-N domain; contains ATP/GTP-binding site motif A (P-loop) Length = 525 Score = 32.3 bits (70), Expect = 0.35 Identities = 12/22 (54%), Positives = 18/22 (81%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANET 92 I+ +GPPGTGKT IA+++ N + Sbjct: 140 IVFWGPPGTGKTSIAKSLINSS 161 >At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1189 Score = 31.9 bits (69), Expect = 0.47 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110 R I ++GPPG GKT IAR V N+ F L Sbjct: 258 RIIGIWGPPGIGKTTIARVVYNQLSHSFQL 287 >At3g05780.1 68416.m00649 Lon protease, putative similar to Lon protease homolog 2 SP:P93655 Length = 924 Score = 31.9 bits (69), Expect = 0.47 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVAN--ETGAFFFLINGPEIMSKLAGESES------- 158 G + I + GPPG GKT I R++A + F F + G ++++ G ++ Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHCQTYVGAMPG 495 Query: 159 NLRKAFEEADKNSPAIIFIDELDAI 233 + + + +P I+F DE+D + Sbjct: 496 KMVQCLKSVGTANPLILF-DEIDKL 519 >At1g77470.1 68414.m09021 replication factor C 36 kDA, putative similar to SWISS-PROT:P40937 activator 1 36 kDa subunit (Replication factor C 36 kDa subunit, A1 36 kDa subunit, RF-C 36 kDa subunit, RFC36) [Homo sapiens] Length = 369 Score = 31.9 bits (69), Expect = 0.47 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANE 89 +L+YGPPGTGKT AVA + Sbjct: 75 LLLYGPPGTGKTSTILAVARK 95 >At1g66950.1 68414.m07612 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza] Length = 1454 Score = 31.9 bits (69), Expect = 0.47 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89 VKP R L+ GPP +GKT + +A+A + Sbjct: 198 VKPSRMTLLLGPPSSGKTTLLQALAGK 224 >At4g27420.1 68417.m03941 ABC transporter family protein D.melanogaster P element CaSpeR-1 gene (white protein),PID:g870996 Length = 639 Score = 31.5 bits (68), Expect = 0.62 Identities = 31/107 (28%), Positives = 44/107 (41%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD 188 VKP + M GP G+GKT + A+ G E KL G N K +A Sbjct: 75 VKPGEILAMLGPSGSGKTSLLTALGGRVG---------EGKGKLTGNISYN-NKPLSKAV 124 Query: 189 KNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329 K + F+ + DA+ P T E + + LL L + KK + Sbjct: 125 KRTTG--FVTQDDALYPNLTVT----ETLVFTALLRLPNSFKKQEKI 165 >At2g36380.1 68415.m04464 ABC transporter family protein related to multi drug resistance proteins and P-glycoproteins Length = 1453 Score = 31.5 bits (68), Expect = 0.62 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89 +KP R L+ GPP +GKT + +A+A + Sbjct: 196 IKPSRMTLLLGPPSSGKTTLLQALAGK 222 >At1g73110.1 68414.m08453 ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative similar to ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA) [Oryza sativa] SWISS-PROT:P93431 Length = 432 Score = 31.5 bits (68), Expect = 0.62 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 182 + +K P + ++G G GKT + G +++ E+ S AGE +R + Sbjct: 159 LNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRT 218 Query: 183 A-----DKNSPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLTLMDGMKKSS 323 A ++ +++ I+++DA + +T V +I V L+ L D + S Sbjct: 219 ASQVIQNQGKMSVLMINDIDAGLGRFGETQMTVNNQIVVGTLMNLADNPTRVS 271 >At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1234 Score = 27.5 bits (58), Expect(2) = 0.76 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVAN 86 R + ++GP G GKT IARA+ N Sbjct: 203 RMVGIWGPTGIGKTTIARALFN 224 Score = 22.2 bits (45), Expect(2) = 0.76 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +3 Query: 123 EIMSKLAGES--ESNLRKAFEEADKNSPAIIFIDELD 227 +++SKL + E N A +E + +IFID+LD Sbjct: 265 KLLSKLLDKKNLEINHLDAVKERLRQMKVLIFIDDLD 301 >At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial almost identical to Lon protease homolog 2 mitochondrial precursor SP:P93655, GI:1848290 from [Arabidopsis thaliana] Length = 940 Score = 31.1 bits (67), Expect = 0.82 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVANETGAFFF 107 G + I + GPPG GKT I R++A FF Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKFF 486 >At4g15230.1 68417.m02333 ABC transporter family protein similar to pleiotropic drug resistance like protein [Nicotiana tabacum] GI:20522008, PDR5-like ABC transporter [Spirodela polyrhiza] GI:1514643; contains Pfam profile PF00005: ABC transporter Length = 1326 Score = 30.7 bits (66), Expect = 1.1 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89 V+P R L+ GPPG GKT + +A++ + Sbjct: 164 VRPGRMTLLLGPPGCGKTTLLQALSGK 190 >At3g49210.1 68416.m05378 expressed protein Length = 518 Score = 30.7 bits (66), Expect = 1.1 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = -3 Query: 469 MFLVCMRRISRRPVASGMPMSISRSNRPKRRSAGSMEFGRFVAAITITW 323 + L CMR+ S +P S+R R AGS RF+ + + W Sbjct: 174 LVLACMRKTSNPDELPSLPNQNRSSSRSSRLMAGSRGDSRFLWLVMVIW 222 >At2g29940.1 68415.m03642 ABC transporter family protein similar to ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia] Length = 1426 Score = 30.7 bits (66), Expect = 1.1 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89 +KP R L+ GPPG+GK+ + A+A + Sbjct: 183 IKPGRMTLLLGPPGSGKSTLLLALAGK 209 >At1g15210.1 68414.m01818 ABC transporter family protein Similar to gb|Z70524 GI:1514643 PDR5-like ABC transporter from Spirodela polyrrhiza and is a member of the PF|00005 ABC transporter family. ESTs gb|N97039 and gb|T43169 come from this gene Length = 1442 Score = 30.7 bits (66), Expect = 1.1 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89 VKP R L+ GPP +GKT + A+A + Sbjct: 192 VKPSRMTLLLGPPSSGKTTLLLALAGK 218 >At4g15215.1 68417.m02332 ABC transporter family protein similar to PDR5-like ABC transporter [Spirodela polyrhiza] GI:1514643; contains Pfam profile PF00005: ABC transporter Length = 1390 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83 V+P R L+ GPPG GKT + +A++ Sbjct: 161 VRPGRMTLLLGPPGCGKTTLLQALS 185 >At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein., closest Col-0 homolog to RPP1-WsB Length = 1240 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110 R I ++GPPG GKT IAR + N+ F L Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQVSDRFQL 319 >At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein., closest Col-0 homolog to RPP1-WsB Length = 1214 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110 R I ++GPPG GKT IAR + N+ F L Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQVSDRFQL 319 >At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein., closest Col-0 homolog to RPP1-WsB Length = 1214 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110 R I ++GPPG GKT IAR + N+ F L Sbjct: 290 RIIGIWGPPGIGKTTIARFLLNQVSDRFQL 319 >At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1194 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110 R I ++GPPG GKT IAR + N+ F L Sbjct: 294 RMIGIWGPPGIGKTTIARFLFNQVSDRFQL 323 >At3g16340.1 68416.m02066 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza]; contains Pfam profile: PF00005 ABC transporter Length = 1416 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89 +KP R L+ GPP +GKT + A+A + Sbjct: 170 IKPSRMTLLLGPPSSGKTTLLLALAGK 196 >At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 896 Score = 30.3 bits (65), Expect = 1.4 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = +3 Query: 33 MYGPPGTGKTLIARAVANE 89 ++GPPG GKT IAR++ N+ Sbjct: 263 IWGPPGVGKTTIARSLYNQ 281 >At2g26910.1 68415.m03228 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza] Length = 1420 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETG 95 ++P R L+ GPP +GKT + A+A G Sbjct: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 >At1g73170.1 68414.m08466 expressed protein Length = 666 Score = 30.3 bits (65), Expect = 1.4 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANETG 95 V+ +L+ GPPG GKT + R VA G Sbjct: 194 VQDGNSLLLIGPPGVGKTTMIREVARMLG 222 >At1g15520.1 68414.m01867 ABC transporter family protein similar to ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia] Length = 1423 Score = 30.3 bits (65), Expect = 1.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89 VKP R L+ GPP +GKT + A+A + Sbjct: 177 VKPGRMALLLGPPSSGKTTLLLALAGK 203 >At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT domain-containing protein contains Pfam profiles: PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase family associated with various cellular activities (AAA) Length = 956 Score = 29.9 bits (64), Expect = 1.9 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS 197 + +L+ G PG GKT A+ V+ G +N S G++ SN+ K ++ NS Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNA----SDSRGKANSNIAKGIGGSNANS 448 >At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1193 Score = 29.9 bits (64), Expect = 1.9 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110 R I + GPPG GKT IARA+ ++ F L Sbjct: 215 RMIGIVGPPGIGKTTIARALRDQISENFQL 244 >At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1215 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110 R I ++GPPG GKT I R + N+ + F L Sbjct: 252 RMIGIWGPPGIGKTTIVRFLYNQLSSSFEL 281 >At1g59870.1 68414.m06745 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza] Length = 1469 Score = 29.9 bits (64), Expect = 1.9 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVANE 89 +KP R L+ GPP +GKT + A+A + Sbjct: 194 IKPGRMTLLLGPPSSGKTTLLLALAGK 220 >At5g12180.1 68418.m01429 calcium-dependent protein kinase, putative / CDPK, putative Length = 528 Score = 29.5 bits (63), Expect = 2.5 Identities = 20/79 (25%), Positives = 35/79 (44%) Frame = +3 Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326 + E +L AF+ DK++ I ++EL+ + G + I+S++ DG Sbjct: 446 DREEHLYSAFQHFDKDNSGYITMEELEQALREFGMNDGRDIKEIISEVDGDNDGRINYDE 505 Query: 327 VIVMAATNRPNSIDPALRR 383 + M P+ I P RR Sbjct: 506 FVAMMRKGNPDPI-PKKRR 523 >At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1981 Score = 29.5 bits (63), Expect = 2.5 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVANETGAFFFL 110 R I ++GPPG GKT IAR + ++ F L Sbjct: 224 RMIGIWGPPGIGKTTIARFLLSQVSKSFQL 253 >At3g22980.1 68416.m02898 elongation factor Tu family protein similar to eukaryotic translation elongation factor 2 GB:NP_001952 [Homo sapiens] Length = 1015 Score = 29.5 bits (63), Expect = 2.5 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = +3 Query: 108 LINGPEIMSKLAGESESNLRKAFEEADKNS--PAIIFIDELDAIAPKREKTHGEVERRI 278 +I G ++ S + E+E +RK+ E D +S P ++F+ ++ AI K G R+ Sbjct: 367 IIGGDDVDSSVLAEAEL-VRKSIEACDSSSDSPCVVFVSKMFAIPMKMIPQDGNHRERM 424 >At1g66400.1 68414.m07541 calmodulin-related protein, putative similar to calmodulin-related protein 2, touch-induced from SP:P25070 [Arabidopsis thaliana]; contains Pfam profile: PF00036 EF hand (4 copies) Length = 157 Score = 29.5 bits (63), Expect = 2.5 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Frame = +3 Query: 150 SESNLRKAFEEADKNSPAIIFIDEL-DAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326 S +++K F+ DKN+ I IDEL D I E + ++ + +G Sbjct: 12 SMEDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDE 71 Query: 327 VIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLGD 482 + + + +S + A+R D+ D GR+ +H+ LG+ Sbjct: 72 FVALFQISDQSSNNSAIR---DLKEAFDLYDLDRNGRISANELHSVMKNLGE 120 >At1g61950.1 68414.m06988 calcium-dependent protein kinase, putative / CDPK, putative similar to calcium-dependent protein kinase GI:3283996 from [Nicotiana tabacum]; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048 Length = 551 Score = 29.5 bits (63), Expect = 2.5 Identities = 21/84 (25%), Positives = 37/84 (44%) Frame = +3 Query: 57 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDELDAIA 236 K L+ A + G ++ M++ E E NL KAF+ DK++ I EL+ Sbjct: 442 KQLLEDADVDGNGTIDYIEFISATMNRFRVEREDNLFKAFQHFDKDNSGFISRQELETAM 501 Query: 237 PKREKTHGEVERRIVSQLLTLMDG 308 + + + I+S++ DG Sbjct: 502 KEYNMGDDIMIKEIISEVDADNDG 525 >At1g50700.1 68414.m05701 calcium-dependent protein kinase, putative / CDPK, putative similar to calmodulin-domain protein kinase CDPK isoform 9 [Arabidopsis thaliana] gi|1399265|gb|AAB03242 Length = 521 Score = 29.5 bits (63), Expect = 2.5 Identities = 19/70 (27%), Positives = 28/70 (40%) Frame = +3 Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSH 326 ES N+ KAF+ DK+ I DEL+A + + I+S + DG Sbjct: 446 ESNENVYKAFQHFDKDGSGYITTDELEAALKEYGMGDDATIKEILSDVDADNDGRINYDE 505 Query: 327 VIVMAATNRP 356 M + P Sbjct: 506 FCAMMRSGNP 515 >At1g04730.1 68414.m00469 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 954 Score = 29.5 bits (63), Expect = 2.5 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE-SNLRKAFEEADKNSPA 203 +L+ G PG GKT +A A G IN + S A E+ ++ + + P Sbjct: 348 LLLCGAPGLGKTTLAHIAAKHCGYRVVEINASDERSASAIETRILDVVQMNSVTADSRPK 407 Query: 204 IIFIDELD 227 + IDE+D Sbjct: 408 CLVIDEID 415 >At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1046 Score = 29.1 bits (62), Expect = 3.3 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 33 MYGPPGTGKTLIARAVANETGAFFFL 110 +YGP G GKT IARA+ + + F L Sbjct: 215 IYGPAGIGKTTIARALHSRLSSSFQL 240 >At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]; contains Pfam profile PF02861: Clp amino terminal domain Length = 945 Score = 29.1 bits (62), Expect = 3.3 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 13/81 (16%) Frame = +3 Query: 30 LMYGPPGTGKTLIARAVA---NETGAFFFLINGPEIMS----------KLAGESESNLRK 170 ++ G G GKT IA +A E A FL+ IMS K GE E+ + Sbjct: 313 ILLGEAGVGKTAIAEGLAISIAEASAPGFLLT-KRIMSLDIGLLMAGAKERGELEARVTA 371 Query: 171 AFEEADKNSPAIIFIDELDAI 233 E K+ I+FIDE+ + Sbjct: 372 LISEVKKSGKVILFIDEVHTL 392 >At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Non-consensus TT donor splice site at exon 1 Length = 1104 Score = 29.1 bits (62), Expect = 3.3 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 33 MYGPPGTGKTLIARAVANETGAFFFL 110 ++GP G GKT IARA+ N+ F L Sbjct: 211 IWGPAGIGKTTIARALFNQLSTGFRL 236 >At4g15236.1 68417.m02335 ABC transporter family protein similar to pleiotropic drug resistance like protein [Nicotiana tabacum] GI:20522008, ABC1 protein [Nicotiana plumbaginifolia] GI:14331118; contains Pfam profile PF00005: ABC transporter Length = 1388 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83 ++P R L+ GPPG GKT + A++ Sbjct: 159 IRPKRMTLLLGPPGCGKTTLLLALS 183 >At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1095 Score = 29.1 bits (62), Expect = 3.3 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%) Frame = +3 Query: 33 MYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLAGESESNLRKAFEEADKNSP 200 ++GP G GKT IARA+ N+ F F+ N E + AG + L+ ++ Sbjct: 210 IWGPAGVGKTTIARALYNQYHENFNLSIFMENVRESYGE-AGLDDYGLKLHLQQR----- 263 Query: 201 AIIFIDELDAIAPKREKTHGEVERRIVSQ-LLTLMDGMKKSSHVIVMAATNR 353 F+ +L R + G +E R+ SQ +L ++D + + +A N+ Sbjct: 264 ---FLSKLLDQKDLRVRHLGAIEERLKSQKVLIILDDVDNIEQLKALAKENQ 312 >At2g37280.1 68415.m04573 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza] Length = 1413 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83 + P R L+ GPPG GKT + +A++ Sbjct: 162 ISPGRLTLLLGPPGCGKTTLLKALS 186 >At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1038 Score = 28.7 bits (61), Expect = 4.4 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 33 MYGPPGTGKTLIARAVANETGAFF 104 ++GP G GKT IARA+ N+ F Sbjct: 210 IWGPAGIGKTTIARALYNQLSTNF 233 >At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1188 Score = 28.7 bits (61), Expect = 4.4 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLAGES 152 IG R I++YG G GKT +A+ NE F FL N E K G + Sbjct: 204 IGSDGVRVIVIYGMGGIGKTTLAKVAFNEFSHLFEGSSFLENFREYSKKPEGRT 257 >At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. identical to RPS2 (gi:13661831) Length = 909 Score = 28.7 bits (61), Expect = 4.4 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Frame = +3 Query: 21 RGIL-MYGPPGTGKTLIARAVANE 89 RGI+ +YGP G GKT + +++ NE Sbjct: 175 RGIIGVYGPGGVGKTTLMQSINNE 198 >At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive effector-related contains similarity to SEN1, a positive effector of tRNA-splicing endonuclease [Saccharomyces cerevisiae] gi|172574|gb|AAB63976 Length = 818 Score = 28.7 bits (61), Expect = 4.4 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Frame = +3 Query: 3 IGVKPPRGILMYGPPGTGKT----LIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 170 +G+ +L+ GPPGTGKT I A+ + T A + ++ + +++ Sbjct: 268 VGLSRKSFVLIQGPPGTGKTQTILSILGAIMHATPA---RVQSKGTDHEVKRGIQMTIQE 324 Query: 171 AFEEADKNSPAIIFIDELDAIAPK 242 + + SP I+ ++ DAI P+ Sbjct: 325 KYNHWGRASPWILGVNPRDAIMPE 348 >At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like ABC transporter, Spirodela polyrrhiza, EMBL:Z70524 Length = 1450 Score = 28.7 bits (61), Expect = 4.4 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83 +KP R L+ GPP GKT + +A++ Sbjct: 197 IKPGRLTLLLGPPSCGKTTLLKALS 221 >At3g05790.1 68416.m00650 Lon protease, putative similar to Lon protease homolog 2 SP:P93655 Length = 942 Score = 28.7 bits (61), Expect = 4.4 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 9/109 (8%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIARAVAN--ETGAFFFLINGPEIMSKLAGESES------- 158 G + I + GP G GKT I R++A + F F + G ++++ G + Sbjct: 445 GTSQGKIICLSGPTGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHRRTYIGAMPG 504 Query: 159 NLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 305 + + + +P ++ IDE+D + + HG+ S +L L+D Sbjct: 505 KMVQCLKNVGTENP-LVLIDEIDKLGVRGH--HGDP----ASAMLELLD 546 >At2g34440.1 68415.m04225 MADS-box family protein similar to SP|Q9XGJ4 MADS box protein GGM13 {Gnetum gnemon}; contains Pfam profile PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain) Length = 172 Score = 28.7 bits (61), Expect = 4.4 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +3 Query: 108 LINGPEIMSKLAGE-SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRI 278 L+N K GE S+ L A +E K S + +DEL+ + + HG +E ++ Sbjct: 100 LLNQEVEAEKERGEKSQEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQV 157 >At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1068 Score = 28.3 bits (60), Expect = 5.8 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 33 MYGPPGTGKTLIARAVANETGAFF 104 ++GP G GKT IAR + N+ + F Sbjct: 212 IWGPAGIGKTTIARTLFNKISSIF 235 >At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1068 Score = 28.3 bits (60), Expect = 5.8 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 33 MYGPPGTGKTLIARAVANETGAFF 104 ++GP G GKT IAR + N+ + F Sbjct: 212 IWGPAGIGKTTIARTLFNKISSIF 235 >At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1085 Score = 28.3 bits (60), Expect = 5.8 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +3 Query: 33 MYGPPGTGKTLIARAVANETGAFFFL 110 ++GP G GK+ IARA+ N+ + F L Sbjct: 212 IWGPAGIGKSTIARALYNQLSSSFQL 237 >At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains Pfam profile: PF03969 AFG1-like ATPase Length = 464 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLI 68 V P +G+ +YG GTGKT++ Sbjct: 130 VSPVKGLYLYGGVGTGKTML 149 >At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS class), putative domain signature TIR-NBS exists, suggestive of a disease resistance protein. Length = 429 Score = 28.3 bits (60), Expect = 5.8 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Frame = +3 Query: 39 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFID 218 GP G GK+ IARA+ N + F L M L S+SN + E + K S + Sbjct: 227 GPAGIGKSTIARALHNLLSSSFHL---SCFMENLI--SQSNPHSSLEYSSKLSLQEQLLS 281 Query: 219 ELDAIAPKREKTHGEVERRIVSQ-LLTLMDGMKKSSHVIVMA 341 ++ R + G ++ R+ Q +L ++D + + V+A Sbjct: 282 QVLNEKDIRIRHLGAIQERLHDQRVLIILDDVTSLEQLEVLA 323 >At1g63160.1 68414.m07138 replication factor C 40 kDa, putative similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit (Replication factor C 40 kDa subunit, A1 40 kDa subunit, RF-C 40 kDa subunit, RFC40) [Mus musculus] Length = 333 Score = 28.3 bits (60), Expect = 5.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +3 Query: 27 ILMYGPPGTGKTLIARAVANE 89 +++ GPPGTGKT A+A+E Sbjct: 51 LILSGPPGTGKTTSILALAHE 71 >At1g05990.1 68414.m00627 calcium-binding protein, putative strong similarity to calcium-binding protein [Lotus japonicus] GI:18413495; contains INTERPRO:IPR002048 calcium-binding EF-hand domain Length = 150 Score = 28.3 bits (60), Expect = 5.8 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 147 ESESNLRKAFEEADKNSPAIIFIDELDAI 233 E E ++++AF D+N I +DEL A+ Sbjct: 75 EEEEDMKEAFNVFDQNGDGFITVDELKAV 103 >At5g51430.1 68418.m06376 conserved oligomeric Golgi complex component-related / COG complex component-related contains weak similarity to Conserved oligomeric Golgi complex component 7 (Swiss-Prot:P83436) [Homo sapiens] Length = 836 Score = 27.9 bits (59), Expect = 7.6 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +3 Query: 498 QIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDARGS 632 QIA+E +GA L A L+ R D++ L DD + RGS Sbjct: 44 QIASEE---IGASLEEQSGGALLRVPRATRDVLRLRDDAVSLRGS 85 >At5g17890.1 68418.m02098 LIM domain-containing protein / disease resistance protein-related low similarity to disease resistance protein RPP4 [Arabidopsis thaliana] GI:20270890; contains Pfam profiles PF00412: LIM domain, PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat Length = 1613 Score = 27.9 bits (59), Expect = 7.6 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +3 Query: 21 RGILMYGPPGTGKTLIARAVAN 86 R I ++G PG GKT +A+AV N Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFN 211 >At5g07800.1 68418.m00894 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase 2 (FMO2) from Homo sapiens [GI:1834493]; contains Pfam profile: PF00743 Flavin-binding monooxygenase-like Length = 460 Score = 27.9 bits (59), Expect = 7.6 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -2 Query: 719 FPPTVSRNADXDDFVIAYRKLSMETARELRTSGVNLIVLEVNE 591 F SR+ VI + +ARELR G ++VLE NE Sbjct: 4 FTSEASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNE 46 >At3g57530.1 68416.m06406 calcium-dependent protein kinase, putative / CDPK, putative similar to calmodulin-domain protein kinase CDPK isoform 7 [Arabidopsis thaliana] gi|1399277|gb|AAB03247 Length = 538 Score = 27.9 bits (59), Expect = 7.6 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = +3 Query: 150 SESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHV 329 ++ +L+KAF D+N+ I I+EL T EV I+ + T DG Sbjct: 437 NDEHLKKAFAFFDQNNNGYIEIEELREALSDELGTSEEVVDAIIRDVDTDKDGRISYEEF 496 Query: 330 IVMAAT 347 + M T Sbjct: 497 VTMMKT 502 >At3g25620.1 68416.m03189 ABC transporter family protein similar to GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol. 6 (4), 343-356 (1997)) Length = 467 Score = 27.9 bits (59), Expect = 7.6 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 9 VKPPRGILMYGPPGTGKTLIARAVA 83 VKP + M GP G+GKT + A+A Sbjct: 107 VKPGELLAMLGPSGSGKTTLVTALA 131 >At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA repair protein recA, chloroplast [Precursor] SP:Q39199 from [Arabidopsis thaliana] ;contains Pfam profile: PF00154 recA bacterial DNA recombination protein Length = 439 Score = 27.9 bits (59), Expect = 7.6 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 26/127 (20%) Frame = +3 Query: 6 GVKPPRGILMYGPPGTGKTLIA-RAVA--NETGAFFFLINGPEIM----SKLAGESESNL 164 G+ R + +YGP +GKT +A A+A + G L++ SK G NL Sbjct: 131 GLPKGRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENL 190 Query: 165 --------RKAFEEADK--NSPAI--IFIDELDAIAPKREKTHGEV-------ERRIVSQ 287 A E AD+ S A+ I +D + A+ P+ E GE+ + R++SQ Sbjct: 191 IVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAE-IEGEIGMQQMGLQARLMSQ 249 Query: 288 LLTLMDG 308 L M G Sbjct: 250 ALRKMSG 256 >At1g21550.1 68414.m02695 calcium-binding protein, putative contains similarity to calcium-binding protein GB:CAB63264 GI:6580549 from [Lotus japonicus] Length = 155 Score = 27.9 bits (59), Expect = 7.6 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +3 Query: 156 SNLRKAFEEADKNSPAIIFIDELDAIAPK---REKTHGEVERRIVSQLLTL 299 ++LR+ F+ DKN ++ +DEL I K E T E+E + Q L L Sbjct: 9 NDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDL 59 >At1g13280.1 68414.m01542 allene oxide cyclase family protein similar to ERD12 [GI:15320414], allene oxide cyclase GI:8977961 from [Lycopersicon esculentum]; contains Pfam profile PF06351: Allene oxide cyclase Length = 254 Score = 27.9 bits (59), Expect = 7.6 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = +3 Query: 54 GKTLIARAVANETGAFFFLI--NGPEIMSKLAGESESNLRKAFEEADKNSPAII 209 G + AR+ + TG FF I + S+ E N+ + F E D+NSPA++ Sbjct: 48 GLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYE-FNEGDRNSPAVL 100 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,343,675 Number of Sequences: 28952 Number of extensions: 297275 Number of successful extensions: 1454 Number of sequences better than 10.0: 170 Number of HSP's better than 10.0 without gapping: 1252 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1352 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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