Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0631
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.4  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.7  

>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 240 RCKKVNTGNMSGRIVNADASKGFLFEIRMRSC 335
           RC K +  N + R+ +     G  F+I  ++C
Sbjct: 56  RCDKNSDNNGATRLASVRCPVGLAFDIERQTC 87


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 123 NLQSLKVCLTFHFRHARRGIDAISLAPVETAP 218
           +L ++++C        RRG   + L PV + P
Sbjct: 200 DLNAVRLCFQVFLEGERRGKFTVPLTPVVSEP 231


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +2

Query: 167 CSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 289
           C     C I   +RNR               R+ V+ +RQR
Sbjct: 122 CREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,678
Number of Sequences: 336
Number of extensions: 2683
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)