Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0631
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    32   0.091
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    29   0.48 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.6  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.9  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 268 MFPVFTFLHRRSLAHDGGAVSTGARDIASIPRRACR 161
           ++  F FLH R +A + G  S  +R++A+I  +  R
Sbjct: 661 IYRAFVFLHNRDIAENNGVFSARSRNVATIAAKGAR 696


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 62  FVYNFSNGTLSVCVLNDRHTQFTKFEGVFDF 154
           F+ N   G L+V   N +  +FT F+G FDF
Sbjct: 2   FLQNLFLGFLAVVCANAQFAEFTAFDGKFDF 32


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -2

Query: 81  FEKLYTKWSCERIESTLHSL 22
           F+K +T   CERIESTLH L
Sbjct: 510 FKKKFTT-ICERIESTLHEL 528


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +3

Query: 123 NLQSLKV--CLTFHFRHARRGIDAISLA 200
           NL+SL V  CL +HF ++  G+D+ +++
Sbjct: 216 NLKSLYVELCLVYHFHNSHLGMDSSTVS 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,722
Number of Sequences: 5004
Number of extensions: 42905
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)