SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0631
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793...    31   0.67 
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    29   2.7  
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695...    29   3.5  
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166...    29   4.7  
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124...    29   4.7  
09_04_0021 - 13861369-13861538,13862274-13862432,13862493-138627...    28   6.2  
03_05_0092 - 20714102-20717902                                         28   8.2  
02_01_0424 - 3097245-3099377                                           28   8.2  

>11_06_0470 +
           23977394-23977503,23977755-23977922,23978724-23979367,
           23979584-23979823,23980175-23980296,23980397-23981080
          Length = 655

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -2

Query: 189 SHRSLDEHVES-----EKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCERI 43
           SH+S+D  V+       K+N     VNC+ RS +    +VPF K   +  C  I
Sbjct: 131 SHKSIDAAVKDTIRHLRKNNVELTKVNCILRSMRGSAESVPFTKNSVRTVCAEI 184


>01_05_0553 +
           23185473-23186188,23187096-23187101,23187230-23187374,
           23187887-23188159,23188275-23188338,23188479-23188744,
           23188951-23189045,23189544-23189718,23190669-23191063,
           23191830-23191953,23192864-23192959,23193049-23193120,
           23194687-23194824,23195369-23195549,23195602-23195963,
           23196944-23197386,23197461-23197763,23197857-23198081,
           23198260-23198350,23198702-23198779,23198939-23199229,
           23199316-23199513,23199681-23200163,23200488-23200562,
           23201163-23201324,23201400-23201729,23201816-23201916,
           23202477-23202581,23202931-23203162,23203913-23204257,
           23204346-23204447,23206010-23206153,23206463-23206551,
           23206979-23207061,23207172-23207287,23207824-23207909,
           23208461-23208560,23209270-23209335
          Length = 2451

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 255 SLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFV 127
           SL ++DD   ++E        +SH   D +VESE+ N  ++FV
Sbjct: 589 SLLHMDDSIKLSEVAPSEC-SVSHECFDSNVESEEKNMVTSFV 630


>08_02_0925 -
           22668875-22668889,22668942-22669018,22669383-22669500,
           22669662-22669685,22670067-22670360,22670456-22670563,
           22671098-22671946
          Length = 494

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -2

Query: 273 RTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLD--EHVESEKSNTPSNFVNCVWRSFKT 100
           R+  L + FY     L T     RAP + H  ++  +H E++      +F+N +W +   
Sbjct: 286 RSLTLHTNFYKASSILSTFGLLTRAPNLLHLEIEITDH-ENQSDEVDIDFLNALWTNSLF 344

Query: 99  QTLNVPFEKLYTKWSCE 49
             L+    K  T WS E
Sbjct: 345 ANLDFVSIKSATCWSNE 361


>07_03_0909 +
           22512313-22512474,22513151-22513465,22513539-22516633,
           22516812-22516910,22517031-22517379
          Length = 1339

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +2

Query: 20  LNECSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLSTCSS 175
           +NE S LS  S+ H     SNG+L V VL    T + +FEG    S+  C S
Sbjct: 389 VNEVSFLSYNSKNHIAAYLSNGSLCVSVLPVADT-WEEFEG-SGISVDPCFS 438


>03_06_0744 +
           35910512-35910569,35911145-35911325,35912332-35912419,
           35912541-35912726,35913591-35913725,35913803-35913862,
           35914609-35914698,35915384-35915515,35916039-35916183,
           35916266-35916439,35916629-35916692,35916778-35916847,
           35917328-35917445,35918258-35918280,35918398-35918499,
           35919831-35920250,35920327-35920563
          Length = 760

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 304 PLLASALTIRP-DMFPVFTFLHRRSLAHDGGAVSTGARDI 188
           PLLA++   RP D+  +F+  H    AHD GAVSTGA  +
Sbjct: 24  PLLAASP--RPSDLAQMFS--HGADSAHDAGAVSTGASGV 59


>09_04_0021 -
           13861369-13861538,13862274-13862432,13862493-13862720,
           13864057-13864246
          Length = 248

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +1

Query: 193 LWRP*KPRLRHERVIVDVKK*TQETCPG 276
           LW+P +P+L+ +R I +++K T+ +CPG
Sbjct: 164 LWKPREPKLKKQR-IRNMRK-TESSCPG 189


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 267  CFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVW 115
            CF+    ++DD+  +     L+     H S D+  ES  S  P +++NC++
Sbjct: 1078 CFITHGAWVDDYPFLFSVWTLKVTSCPHVSTDQ--ESSFSIEPLDWLNCLF 1126


>02_01_0424 - 3097245-3099377
          Length = 710

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +2

Query: 32  SVLSILSQLHFVYNFSNGTLSVCV-----LNDRHTQFTKFEGVFDFSLSTCSS 175
           S LS L  LH  YN   GT+   V     LN     F KF G   F ++   S
Sbjct: 339 SKLSSLKSLHVSYNSFAGTIPESVYTCSNLNALQLSFNKFHGQLSFRITNLKS 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,958
Number of Sequences: 37544
Number of extensions: 297437
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -