Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0631
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)              29   2.7  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 29   3.6  
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)                   29   4.8  
SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)                 29   4.8  
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)                   28   6.3  
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)                       28   8.4  

>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1916

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = -2

Query: 258  CSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPF 79
            CSL  +        A F R P ++ R+ D HV ++    P+       +  K + L VP 
Sbjct: 1653 CSLIGLYTRRRELAAAFTRTPAVNQRATDPHVAADDVTPPARPPLAAAQQTKDRQLAVPA 1712

Query: 78   EKLYTKWSCE 49
              L     C+
Sbjct: 1713 TALRAPGQCK 1722


>SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/78 (24%), Positives = 30/78 (38%)
 Frame = -2

Query: 282 RSARTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFK 103
           +S +   L SL  +        A F R P ++ R+ D HV ++    P+          K
Sbjct: 699 QSRKATMLVSLIGLYTRKRELAAAFTRTPAVNQRATDPHVVADDVTPPARPPLAATEQTK 758

Query: 102 TQTLNVPFEKLYTKWSCE 49
            + L VP   L     C+
Sbjct: 759 DRPLAVPATALRAPGQCK 776


>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
          Length = 337

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 136 KLCKLCMAI-VQNTNTQCPVRKVIHKMELRENREHTTLVE 20
           + CK+C    VQ  N QCP+ ++      R N  + TLV+
Sbjct: 55  EFCKMCFTQNVQEANLQCPMCRIRISSWARRNARNGTLVD 94


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/78 (23%), Positives = 31/78 (39%)
 Frame = -2

Query: 282 RSARTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFK 103
           +S +   L SL  +        A F R P ++ R+ D HV ++    P+       +  K
Sbjct: 704 QSRKATLLVSLIGLYTRRRELAAAFTRTPAVNQRATDPHVAADGVTPPARPPLAAAQQTK 763

Query: 102 TQTLNVPFEKLYTKWSCE 49
            + L +P   L     C+
Sbjct: 764 DRPLAIPATALRAPGQCK 781


>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
          Length = 1264

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = -2

Query: 261  LCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVP 82
            L SL  +  H     A F R P +  R+ D HV ++    P+       +  + + L VP
Sbjct: 869  LVSLIGLYTHRRELAAAFTRTPAVRQRATDPHVAADDVTPPARPPLAAAQQTRDRPLAVP 928

Query: 81   FEKLYTKWSCE 49
               L     C+
Sbjct: 929  ATALRPPGQCK 939


>SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)
          Length = 745

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = -2

Query: 261 LCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVP 82
           L SL  +  H     A F R P +  R+ D HV ++    P+       +  + + L VP
Sbjct: 521 LVSLIGLYTHRRELAAAFTRTPAVRQRATDPHVAADDVTPPARPPLAAAQQTRDRPLAVP 580

Query: 81  FEKLYTKWSCE 49
              L     C+
Sbjct: 581 ATALRPPGQCK 591


>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
          Length = 1081

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 216 ARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCE 49
           A F R P ++ R+ D HV ++    P+       +  K + L VP   L     C+
Sbjct: 766 AAFTRTPAVNQRATDPHVAADDVTPPARPPLAAAQQTKDRPLAVPATALRAPGQCK 821


>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
          Length = 381

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/72 (31%), Positives = 27/72 (37%)
 Frame = +2

Query: 173 SRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQRRCEQRIPVRNSNAVMSSPFGF 352
           SRDR       R+R               R+  R DR+RR  +R P R S     S    
Sbjct: 304 SRDRDRKRSRSRDRRKSRSRSRDRRRSRSRERRRDDRKRRSRERSPKRRSREREES---- 359

Query: 353 LISHRPMSKSCT 388
              HR  S SCT
Sbjct: 360 RSRHRGRSNSCT 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,683,971
Number of Sequences: 59808
Number of extensions: 351581
Number of successful extensions: 992
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)