BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0631 (700 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 32 0.45 U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone... 32 0.45 AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 32 0.45 AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 32 0.45 AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 32 0.45 U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone... 29 2.4 Z69883-4|CAA93742.2| 480|Caenorhabditis elegans Hypothetical pr... 28 7.4 >U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone receptor familyprotein 46, isoform a protein. Length = 528 Score = 31.9 bits (69), Expect = 0.45 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 143 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 289 VF+ + CS+ + CDI+ RNR + KHVR +R + Sbjct: 127 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 175 >U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone receptor familyprotein 46, isoform b protein. Length = 576 Score = 31.9 bits (69), Expect = 0.45 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 143 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 289 VF+ + CS+ + CDI+ RNR + KHVR +R + Sbjct: 175 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 223 >AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor NHR-46 protein. Length = 525 Score = 31.9 bits (69), Expect = 0.45 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 143 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 289 VF+ + CS+ + CDI+ RNR + KHVR +R + Sbjct: 124 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 172 >AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor NHR-46 protein. Length = 534 Score = 31.9 bits (69), Expect = 0.45 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 143 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 289 VF+ + CS+ + CDI+ RNR + KHVR +R + Sbjct: 133 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 181 >AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor NHR-46 protein. Length = 527 Score = 31.9 bits (69), Expect = 0.45 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 143 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 289 VF+ + CS+ + CDI+ RNR + KHVR +R + Sbjct: 126 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 174 >U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone receptor familyprotein 46, isoform c protein. Length = 395 Score = 29.5 bits (63), Expect = 2.4 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +2 Query: 167 CSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 289 CS+ + CDI+ RNR + KHVR +R + Sbjct: 2 CSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 42 >Z69883-4|CAA93742.2| 480|Caenorhabditis elegans Hypothetical protein C27C12.5 protein. Length = 480 Score = 27.9 bits (59), Expect = 7.4 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -2 Query: 117 WRSFKTQTLNVPFEKLYT 64 WR F+T TL + +K+YT Sbjct: 184 WREFETNTLKIKLKKMYT 201 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,659,756 Number of Sequences: 27780 Number of extensions: 260678 Number of successful extensions: 725 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 700 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 725 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1613473434 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -