Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0631
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containi...    31   0.56 
At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00...    29   2.2  
At1g51920.1 68414.m05853 expressed protein                             29   2.2  
At5g35735.1 68418.m04276 auxin-responsive family protein similar...    29   3.9  
At4g19690.2 68417.m02892 iron-responsive transporter (IRT1) iden...    29   3.9  
At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induce...    27   9.0  
At2g20880.1 68415.m02461 AP2 domain-containing transcription fac...    27   9.0  

>At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 487

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = -2

Query: 270 TCFLCSLFYID--DHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQ 97
           T + CS   +D  + +L    R + +P      L+E++     +  SN V  V  S K +
Sbjct: 21  TRYFCSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNE 80

Query: 96  TLNVPFEKLYTKWSCERIESTLH 28
           T      + ++ WSC+ + S+LH
Sbjct: 81  TSPRRLLRFFS-WSCKSLGSSLH 102


>At2g15640.1 68415.m01791 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 426

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 126 NCVWRSFKTQTLNVPFEK 73
           NCVWR F T  L  P+EK
Sbjct: 69  NCVWRFFSTPQLENPYEK 86


>At1g51920.1 68414.m05853 expressed protein
          Length = 78

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 305 IPVRNSNAVMSSPFGFLISHRPMSKSCTYRERRPSGSCGKC 427
           +P+  SNA    P   + S RP+  +C   E  P GSC +C
Sbjct: 23  LPLSQSNATRI-PRAPISSRRPICPACVCCEPAPLGSCCRC 62


>At5g35735.1 68418.m04276 auxin-responsive family protein similar to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 404

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 26  ECSVLSIL-SQLHFVYNFSNGTLSV 97
           +CS LS L S LH+ YN  NGT+S+
Sbjct: 42  DCSDLSALGSFLHWTYNEQNGTVSI 66


>At4g19690.2 68417.m02892 iron-responsive transporter (IRT1)
           identical to Fe(II) transport protein [Arabidopsis
           thaliana] gi|1353266|gb|AAB01678; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 339

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 29  CSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLST 166
           C++  +++ L F   F    L  C+L   +T   KF   F F+++T
Sbjct: 212 CTIKGLIAALCFHQMFEGMGLGGCILQAEYTNMKKFVMAFFFAVTT 257


>At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induced
           protein (AIR12) identical (with 7 residue gap) to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 273

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 23  NECSVLSIL-SQLHFVYNFSNGTLSV 97
           + C  L +L S LH+ YN SN +LSV
Sbjct: 62  DSCEDLPVLNSYLHYTYNSSNSSLSV 87


>At2g20880.1 68415.m02461 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4 [Arabidopsis thaliana] GI:2281633
          Length = 336

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -2

Query: 453 YRPP---NYQRLHFPHDPEGRRSRYVHDFD 373
           Y PP   N QR   P+DP G+R + +  FD
Sbjct: 95  YLPPAIQNQQRFLHPNDPSGQRQQQMISFD 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,604,959
Number of Sequences: 28952
Number of extensions: 232860
Number of successful extensions: 618
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)