BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0631 (700 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containi... 31 0.56 At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00... 29 2.2 At1g51920.1 68414.m05853 expressed protein 29 2.2 At5g35735.1 68418.m04276 auxin-responsive family protein similar... 29 3.9 At4g19690.2 68417.m02892 iron-responsive transporter (IRT1) iden... 29 3.9 At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induce... 27 9.0 At2g20880.1 68415.m02461 AP2 domain-containing transcription fac... 27 9.0 >At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 487 Score = 31.5 bits (68), Expect = 0.56 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Frame = -2 Query: 270 TCFLCSLFYID--DHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQ 97 T + CS +D + +L R + +P L+E++ + SN V V S K + Sbjct: 21 TRYFCSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNE 80 Query: 96 TLNVPFEKLYTKWSCERIESTLH 28 T + ++ WSC+ + S+LH Sbjct: 81 TSPRRLLRFFS-WSCKSLGSSLH 102 >At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640 : F-box protein interaction domain Length = 426 Score = 29.5 bits (63), Expect = 2.2 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = -2 Query: 126 NCVWRSFKTQTLNVPFEK 73 NCVWR F T L P+EK Sbjct: 69 NCVWRFFSTPQLENPYEK 86 >At1g51920.1 68414.m05853 expressed protein Length = 78 Score = 29.5 bits (63), Expect = 2.2 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +2 Query: 305 IPVRNSNAVMSSPFGFLISHRPMSKSCTYRERRPSGSCGKC 427 +P+ SNA P + S RP+ +C E P GSC +C Sbjct: 23 LPLSQSNATRI-PRAPISSRRPICPACVCCEPAPLGSCCRC 62 >At5g35735.1 68418.m04276 auxin-responsive family protein similar to auxin-induced protein AIR12 GI:11357190 [Arabidopsis thaliana] Length = 404 Score = 28.7 bits (61), Expect = 3.9 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = +2 Query: 26 ECSVLSIL-SQLHFVYNFSNGTLSV 97 +CS LS L S LH+ YN NGT+S+ Sbjct: 42 DCSDLSALGSFLHWTYNEQNGTVSI 66 >At4g19690.2 68417.m02892 iron-responsive transporter (IRT1) identical to Fe(II) transport protein [Arabidopsis thaliana] gi|1353266|gb|AAB01678; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563 Length = 339 Score = 28.7 bits (61), Expect = 3.9 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = +2 Query: 29 CSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLST 166 C++ +++ L F F L C+L +T KF F F+++T Sbjct: 212 CTIKGLIAALCFHQMFEGMGLGGCILQAEYTNMKKFVMAFFFAVTT 257 >At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induced protein (AIR12) identical (with 7 residue gap) to auxin-induced protein AIR12 GI:11357190 [Arabidopsis thaliana] Length = 273 Score = 27.5 bits (58), Expect = 9.0 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +2 Query: 23 NECSVLSIL-SQLHFVYNFSNGTLSV 97 + C L +L S LH+ YN SN +LSV Sbjct: 62 DSCEDLPVLNSYLHYTYNSSNSSLSV 87 >At2g20880.1 68415.m02461 AP2 domain-containing transcription factor, putative similar to AP2 domain containing protein RAP2.4 [Arabidopsis thaliana] GI:2281633 Length = 336 Score = 27.5 bits (58), Expect = 9.0 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%) Frame = -2 Query: 453 YRPP---NYQRLHFPHDPEGRRSRYVHDFD 373 Y PP N QR P+DP G+R + + FD Sbjct: 95 YLPPAIQNQQRFLHPNDPSGQRQQQMISFD 124 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,604,959 Number of Sequences: 28952 Number of extensions: 232860 Number of successful extensions: 618 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 603 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 618 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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