BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0630 (700 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 219 4e-58 SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 171 8e-44 SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar... 28 1.1 SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 27 2.0 SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 27 2.6 SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.6 SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 3.4 SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 26 4.5 SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 6.0 SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 26 6.0 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.9 SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.9 SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 7.9 >SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 437 Score = 219 bits (534), Expect = 4e-58 Identities = 105/210 (50%), Positives = 138/210 (65%) Frame = +3 Query: 33 WNNVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 212 W +V MGPPD I ITEAYKKD KK+NLG G YRDD GKP+VLPSVR+AE L S+ L Sbjct: 40 WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99 Query: 213 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKA 392 + EYAPI+G ++ KLA+G+ IK+R + Q++SGTGAL + F+ Y + Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157 Query: 393 KEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHAC 572 K I++ PTWGNH + + L K Y+Y+DP T G D++G L D++ P+GSIILLHAC Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHAC 217 Query: 573 AHNPTGVDPKPSDWGTTFQGDQRKEIIPVL 662 AHNPTGVDP + W + Q+K +L Sbjct: 218 AHNPTGVDPTKAQWDDILKTMQKKNHFALL 247 Score = 34.7 bits (76), Expect = 0.013 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +1 Query: 571 AHTTPPVLTPSPATGEQLSKVIKERKLFPFFDMAYQGFATG 693 AH P + P+ A + + K ++++ F DMAYQGFA+G Sbjct: 218 AHN-PTGVDPTKAQWDDILKTMQKKNHFALLDMAYQGFASG 257 >SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 409 Score = 171 bits (416), Expect = 8e-44 Identities = 82/200 (41%), Positives = 114/200 (57%), Gaps = 3/200 (1%) Frame = +3 Query: 39 NVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRG-LN 215 N+ D I + Y +D PKKVN+ VGAYRDD GKP++LP+V+KA +I+ + N Sbjct: 8 NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67 Query: 216 HEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK-- 389 HEY PI+G +T A A++ F + ++ ++Q++SGTGA L FI Y K Sbjct: 68 HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127 Query: 390 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHA 569 +++ PTW H + L + Y Y+D K FD +G L I PEGSI LLHA Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHA 187 Query: 570 CAHNPTGVDPKPSDWGTTFQ 629 CAHNPTG+DP W + F+ Sbjct: 188 CAHNPTGIDPTREQWLSIFE 207 Score = 28.7 bits (61), Expect = 0.85 Identities = 15/51 (29%), Positives = 24/51 (47%) Frame = +1 Query: 541 PKVPLFCCTRAHTTPPVLTPSPATGEQLSKVIKERKLFPFFDMAYQGFATG 693 P+ +F P + P+ + + + RK FD+AYQGFA+G Sbjct: 178 PEGSIFLLHACAHNPTGIDPTREQWLSIFESLLSRKHLVVFDIAYQGFASG 228 >SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosaccharomyces pombe|chr 1|||Manual Length = 187 Score = 28.3 bits (60), Expect = 1.1 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -1 Query: 571 HACNRIMEPSGIFDISSSAPCKSKPLVLGS 482 H C+ + G FDISS AP K + LGS Sbjct: 51 HVCSDLKLVKGAFDISSKAPIAGK-ITLGS 79 >SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 456 Score = 27.5 bits (58), Expect = 2.0 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +3 Query: 516 ALEDISKIPEGSIILLHACAHNPTGVDPKPSDWGTTFQGD 635 A E + ++PEG+ I + A P G++ + W GD Sbjct: 359 AWEKLPEMPEGAKIYMEKGAGEPLGIEGPTNMWSPFHDGD 398 >SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 553 Score = 27.1 bits (57), Expect = 2.6 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -3 Query: 479 VTVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 363 +T L++ + G+ RV S RR P +LC S++ + L Sbjct: 80 LTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118 >SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 159 Score = 27.1 bits (57), Expect = 2.6 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -3 Query: 212 ESSTVKNFFCLSDRRQNKWFSLIVSICSNP 123 ESST ++ L+ NKWF + +NP Sbjct: 113 ESSTKTVYYVLAHLNDNKWFGVATQKTNNP 142 >SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 26.6 bits (56), Expect = 3.4 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +1 Query: 574 HTTPPVLTPSPATGEQLSKVIKER 645 H TP +L+ +P T +++S +IK R Sbjct: 336 HITPKLLSFTPYTAQEISTIIKAR 359 >SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 344 Score = 26.2 bits (55), Expect = 4.5 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = -2 Query: 624 KLFPS-RWAWGQHRWGCVRTRATE*WNLREFLIYPRVLPAN-RNHWSW 487 K+FP W + RW C+ WN E +I ++L A+ RN W Sbjct: 102 KVFPKVYWIFNHRRW-CLENAPYPNWNY-EMMITEKLLSADARNFHGW 147 >SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr 3|||Manual Length = 418 Score = 25.8 bits (54), Expect = 6.0 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -3 Query: 191 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 84 F C+ D R N +LI S CS FF +LLVC Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257 >SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr 3|||Manual Length = 402 Score = 25.8 bits (54), Expect = 6.0 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -3 Query: 191 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 84 F C+ D R N +LI S CS FF +LLVC Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 25.4 bits (53), Expect = 7.9 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -1 Query: 616 PQSLGLGSTPVGLCAHACNRIMEPSGI 536 PQ+ G+ S P G+ A A + +P+G+ Sbjct: 1142 PQATGIISQPTGIRAQATGIMTQPTGL 1168 >SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 513 Score = 25.4 bits (53), Expect = 7.9 Identities = 13/52 (25%), Positives = 21/52 (40%) Frame = +3 Query: 39 NVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEI 194 N P+ + T + + V G A + G PFV+P + A +I Sbjct: 97 NATNAQPNPTMFSTGQFSTEQGLPNVFFGAAAAQPGSGTPFVMPGIVNAAQI 148 >SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 758 Score = 25.4 bits (53), Expect = 7.9 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = +3 Query: 405 LPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSII 557 LPT TWG PQ +N + +Q +LE + P SI+ Sbjct: 297 LPTVTWGTSPQDVIPINGNIPDPAHVKDNVRAASIQRSLEYMGLKPNTSIV 347 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,309,364 Number of Sequences: 5004 Number of extensions: 76847 Number of successful extensions: 228 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 224 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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