Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0630
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   219   4e-58
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   171   8e-44
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...    28   1.1  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    27   2.0  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   2.6  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   4.5  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   6.0  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   6.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.9  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   7.9  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   7.9  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  219 bits (534), Expect = 4e-58
 Identities = 105/210 (50%), Positives = 138/210 (65%)
 Frame = +3

Query: 33  WNNVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 212
           W +V MGPPD I  ITEAYKKD   KK+NLG G YRDD GKP+VLPSVR+AE  L S+ L
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99

Query: 213 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKA 392
           + EYAPI+G  ++     KLA+G+    IK+R   + Q++SGTGAL +   F+   Y  +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157

Query: 393 KEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHAC 572
           K I++  PTWGNH  + +   L  K Y+Y+DP T G D++G L D++  P+GSIILLHAC
Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHAC 217

Query: 573 AHNPTGVDPKPSDWGTTFQGDQRKEIIPVL 662
           AHNPTGVDP  + W    +  Q+K    +L
Sbjct: 218 AHNPTGVDPTKAQWDDILKTMQKKNHFALL 247



 Score = 34.7 bits (76), Expect = 0.013
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 571 AHTTPPVLTPSPATGEQLSKVIKERKLFPFFDMAYQGFATG 693
           AH  P  + P+ A  + + K ++++  F   DMAYQGFA+G
Sbjct: 218 AHN-PTGVDPTKAQWDDILKTMQKKNHFALLDMAYQGFASG 257


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  171 bits (416), Expect = 8e-44
 Identities = 82/200 (41%), Positives = 114/200 (57%), Gaps = 3/200 (1%)
 Frame = +3

Query: 39  NVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRG-LN 215
           N+     D I  +   Y +D  PKKVN+ VGAYRDD GKP++LP+V+KA +I+  +   N
Sbjct: 8   NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67

Query: 216 HEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK-- 389
           HEY PI+G   +T A A++ F  +  ++      ++Q++SGTGA  L   FI   Y K  
Sbjct: 68  HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127

Query: 390 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHA 569
              +++  PTW  H  +   L +    Y Y+D K   FD +G L  I   PEGSI LLHA
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHA 187

Query: 570 CAHNPTGVDPKPSDWGTTFQ 629
           CAHNPTG+DP    W + F+
Sbjct: 188 CAHNPTGIDPTREQWLSIFE 207



 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 541 PKVPLFCCTRAHTTPPVLTPSPATGEQLSKVIKERKLFPFFDMAYQGFATG 693
           P+  +F        P  + P+      + + +  RK    FD+AYQGFA+G
Sbjct: 178 PEGSIFLLHACAHNPTGIDPTREQWLSIFESLLSRKHLVVFDIAYQGFASG 228


>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 571 HACNRIMEPSGIFDISSSAPCKSKPLVLGS 482
           H C+ +    G FDISS AP   K + LGS
Sbjct: 51  HVCSDLKLVKGAFDISSKAPIAGK-ITLGS 79


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 516 ALEDISKIPEGSIILLHACAHNPTGVDPKPSDWGTTFQGD 635
           A E + ++PEG+ I +   A  P G++   + W     GD
Sbjct: 359 AWEKLPEMPEGAKIYMEKGAGEPLGIEGPTNMWSPFHDGD 398


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 479 VTVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 363
           +T  L++ + G+   RV S   RR P +LC S++  + L
Sbjct: 80  LTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 212 ESSTVKNFFCLSDRRQNKWFSLIVSICSNP 123
           ESST   ++ L+    NKWF +     +NP
Sbjct: 113 ESSTKTVYYVLAHLNDNKWFGVATQKTNNP 142


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 574 HTTPPVLTPSPATGEQLSKVIKER 645
           H TP +L+ +P T +++S +IK R
Sbjct: 336 HITPKLLSFTPYTAQEISTIIKAR 359


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 624 KLFPS-RWAWGQHRWGCVRTRATE*WNLREFLIYPRVLPAN-RNHWSW 487
           K+FP   W +   RW C+       WN  E +I  ++L A+ RN   W
Sbjct: 102 KVFPKVYWIFNHRRW-CLENAPYPNWNY-EMMITEKLLSADARNFHGW 147


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 191 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 84
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 191 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 84
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 616  PQSLGLGSTPVGLCAHACNRIMEPSGI 536
            PQ+ G+ S P G+ A A   + +P+G+
Sbjct: 1142 PQATGIISQPTGIRAQATGIMTQPTGL 1168


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = +3

Query: 39  NVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEI 194
           N     P+  +  T  +  +     V  G  A +   G PFV+P +  A +I
Sbjct: 97  NATNAQPNPTMFSTGQFSTEQGLPNVFFGAAAAQPGSGTPFVMPGIVNAAQI 148


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 405 LPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSII 557
           LPT TWG  PQ    +N       +         +Q +LE +   P  SI+
Sbjct: 297 LPTVTWGTSPQDVIPINGNIPDPAHVKDNVRAASIQRSLEYMGLKPNTSIV 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,364
Number of Sequences: 5004
Number of extensions: 76847
Number of successful extensions: 228
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)