Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0630
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 222 2e-58
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 194 6e-50
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 105 3e-23
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 30 2.0
03_06_0707 - 35655084-35655215,35656088-35656229,35656358-356564... 30 2.0
01_06_1021 - 33883594-33884583 29 3.5
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 29 4.7
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298 29 4.7
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 29 4.7
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 29 4.7
01_06_0324 - 28485196-28486098 29 4.7
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813... 28 6.2
02_01_0393 - 2863335-2864534 28 6.2
06_03_0700 + 23650275-23650299,23650381-23652350 28 8.2
02_01_0759 - 5628913-5630870,5631023-5631047 28 8.2
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 222 bits (542), Expect = 2e-58
Identities = 107/215 (49%), Positives = 140/215 (65%), Gaps = 1/215 (0%)
Frame = +3
Query: 15 ISSSTWWNNVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEI 194
++SS+ + + P D IL +T AY KD P KVNLGVGAYR +EGKP VL VR+AE++
Sbjct: 1 MASSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQM 60
Query: 195 L-HSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFI 371
L ++ EY PI+G A + AKL FG DSP I+ TVQ LSGTG+LR+G EF+
Sbjct: 61 LINNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFL 120
Query: 372 TKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGS 551
+HY + + I++P PTWGNHP++ L + YRY+DP T G D QG LED+ P G+
Sbjct: 121 ARHYHE-RTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGA 179
Query: 552 IILLHACAHNPTGVDPKPSDWGTTFQGDQRKEIIP 656
I+LLHACAHNPTGVDP W Q + K ++P
Sbjct: 180 IVLLHACAHNPTGVDPTLDQWEQIRQLMRSKALLP 214
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 571 AHTTPPVLTPSPATGEQLSKVIKERKLFPFFDMAYQGFATG 693
AH P + P+ EQ+ ++++ + L PFFD AYQGFA+G
Sbjct: 187 AHN-PTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASG 226
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 194 bits (473), Expect = 6e-50
Identities = 91/199 (45%), Positives = 121/199 (60%)
Frame = +3
Query: 18 SSSTWWNNVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEIL 197
S ++W+ +V D IL +TEA+ D P KVN+GVGAYRDD GKP VL VR+AE +
Sbjct: 28 SMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRI 87
Query: 198 HSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITK 377
+ +N EY P+ G + KLA+GE+ IK++ VQ LSGTGA RL +F K
Sbjct: 88 -AGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADF-QK 145
Query: 378 HYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSII 557
+ +I++PTPTW NH I +P K + Y+ P++ G D G ++DI P+GS
Sbjct: 146 RFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFF 205
Query: 558 LLHACAHNPTGVDPKPSDW 614
LLHACAHNPTGVDP W
Sbjct: 206 LLHACAHNPTGVDPSEEQW 224
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +1
Query: 571 AHTTPPVLTPSPATGEQLSKVIKERKLFPFFDMAYQGFATG 693
AH P + PS ++S K +K FPFFDMAYQGFA+G
Sbjct: 211 AHN-PTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASG 250
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 105 bits (253), Expect = 3e-23
Identities = 44/95 (46%), Positives = 58/95 (61%)
Frame = +3
Query: 330 LSGTGALRLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDL 509
LSGTGA RL +F + + +I++PTPTW NH I +P + + Y+ P++ G D
Sbjct: 68 LSGTGACRLFADF-QRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDF 126
Query: 510 QGALEDISKIPEGSIILLHACAHNPTGVDPKPSDW 614
G ++DI P GS LLHACAHNPTGVDP W
Sbjct: 127 AGLMDDIKNAPNGSFFLLHACAHNPTGVDPTEEQW 161
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 571 AHTTPPVLTPSPATGEQLSKVIKERKLFPFFDMAYQGFATG 693
AH P + P+ ++S K + FPFFDMAYQGFA+G
Sbjct: 148 AHN-PTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASG 187
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 33 WNNVXMGPPDVILXITEAYKKDTHPKKVNLGV 128
+ +V D IL +TEA+ D P KVN+GV
Sbjct: 35 FGHVEPASKDPILGVTEAFLADPSPDKVNVGV 66
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 448 PSTCRTRNTVTSIPRPMVSICREHSRIYQKFPKVPLFCCTRAHTTPPVLTPSPATG 615
P+ R+R + P P V + +HSR+ +F L + P+ +P+PA G
Sbjct: 96 PNPSRSRTAAAAPPPPHVPLHADHSRLLSRFRHAVL-----PESASPLHSPAPAAG 146
>03_06_0707 -
35655084-35655215,35656088-35656229,35656358-35656485,
35656852-35656944,35657183-35657252,35657324-35657445,
35658143-35658265,35659453-35659710,35659995-35660074,
35660244-35660389,35660773-35660906,35661001-35661137,
35663013-35663135,35663521-35663590,35663925-35664050,
35664166-35664393
Length = 703
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 506 FAGSTRGYIKNSRRFHYSVARVRTQPH 586
F G+T G IK+ RRFH+ A + H
Sbjct: 330 FYGATEGLIKHRRRFHFHEAMLEIHDH 356
>01_06_1021 - 33883594-33884583
Length = 329
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -1
Query: 313 LLLFLMTGLSSPKASLATASVYVASP--LMGAYSWLSPLL*RISSAFL 176
+LLF ++ LS+ A AS+Y A P + + + L P+L R+ FL
Sbjct: 87 ILLFTLSLLSTAAAVFTVASLYAAKPASIASSLAALPPILPRLLRTFL 134
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 422 GKPPANLQHPQLAAQEIPLLRSQDQWFRFAGS 517
G PP + +L +E PL+RS+ WFRFA S
Sbjct: 1765 GCPPIIKEEMKLN-EEPPLIRSKYGWFRFAAS 1795
>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
Length = 439
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 457 CRTRNTVTSIPRPMVSICREHSRIYQKFPKVPLFCCTRAHTTPPVLTP 600
C N TS PR CR + + VP+ TR PPV P
Sbjct: 46 CYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPRPPVRRP 93
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -1
Query: 520 SAPCKSKPLVLGSK*RYFLCGKLRVLQICGWFPQVGVGSQISF 392
+A +++PL++G G+ RVL+ GW P G+G+ +++
Sbjct: 789 TALIENRPLLIGED---LTEGEARVLEEYGWVPNSGLGTMLNY 828
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 423 GNHPQICNTLNLPHKKYRYFDPK 491
GN Q C T +P KY+ DPK
Sbjct: 186 GNWSQFCKTFEVPVVKYQQMDPK 208
>01_06_0324 - 28485196-28486098
Length = 300
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 423 GNHPQICNTLNLPHKKYRYFDPK 491
GN Q C T +P KY+ DPK
Sbjct: 189 GNWSQFCKTFEVPVVKYQQMDPK 211
>06_02_0148 -
12280794-12280962,12281102-12281210,12281283-12281385,
12281587-12281618,12281709-12281926,12282035-12282150,
12282428-12282683,12282912-12282999,12283393-12283468,
12283562-12283620,12285236-12285305,12285399-12285539
Length = 478
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 60 DVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILH 200
D+ + YK+D K LG+ AYR P +LPSV + H
Sbjct: 80 DIAIDSYHRYKEDVGIMK-GLGLNAYRFSVSWPRILPSVEPFVTLFH 125
>02_01_0393 - 2863335-2864534
Length = 399
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 532 QKFPKVPLFCC-TRAHTTPPVLTPSPATGEQLSKVIKER 645
QK P VP TRA+++ L PSPA + +K+R
Sbjct: 110 QKQPPVPASAAATRAYSSSAALVPSPAPASATTPPMKQR 148
>06_03_0700 + 23650275-23650299,23650381-23652350
Length = 664
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 644 LSLITLESCSPVAGLGVNTGGVVCARVQQNN 552
L ++T+E+C VA G+ G CA++Q N
Sbjct: 265 LKVVTVEACPGVADEGLKAIGRCCAKLQSVN 295
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 650 NFLSLITLESCSPVAGLGVNTGGVVCARVQQNN 552
N LSL T+ESCS V G+ G C+++Q N
Sbjct: 259 NLLSL-TVESCSGVGNDGLRAIGRSCSKIQALN 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,653,612
Number of Sequences: 37544
Number of extensions: 548041
Number of successful extensions: 1457
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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