Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0630
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0) 144 6e-35
SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7) 97 1e-20
SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34) 30 1.6
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_33928| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 2.7
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 29 3.6
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 3.6
SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_32472| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-08) 28 6.3
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 28 8.4
SB_55281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8) 28 8.4
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
Length = 512
Score = 144 bits (349), Expect = 6e-35
Identities = 74/180 (41%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Frame = +3
Query: 135 YRDDEGKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI 299
YRD++GKP+VLP V K E L ++G LNHEY I G ++DA KL G D P I
Sbjct: 106 YRDNDGKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAI 164
Query: 300 KNRSNCTVQTLSGTGALRLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPH-KKYR 476
C +Q++SGTG++ LGL+F+ + Y K ++ PTWGNH + + ++YR
Sbjct: 165 AQNRVCGIQSISGTGSVFLGLKFLYQFY-NCKTAYISKPTWGNHLKTLKAVGFTDIREYR 223
Query: 477 YFDPKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDPKPSDWGTTFQGDQRKEIIP 656
Y+ +T D ED+ K PEGSII+LH CAHNPTGVD W +++++ P
Sbjct: 224 YYKAETCSVDFDAMWEDLEKAPEGSIIVLHECAHNPTGVDLSHDQWIKIADIMKKRQLFP 283
Score = 85.0 bits (201), Expect = 5e-17
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
Frame = +3
Query: 15 ISSSTWWNNVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEI 194
++S+ + +V + P D + + Y KD P K+NLGVGAYRD++GKP+VLP V K E
Sbjct: 1 MASTNLFKDVPLVPTDHVFHVMACYNKDKDPSKINLGVGAYRDNDGKPWVLPVVSKVETQ 60
Query: 195 LHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI-KNR 308
L ++G LNHEY I G ++DA KL G D P I +NR
Sbjct: 61 L-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNR 103
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/25 (56%), Positives = 23/25 (92%)
Frame = +1
Query: 619 QLSKVIKERKLFPFFDMAYQGFATG 693
+++ ++K+R+LFP+FD AYQGFA+G
Sbjct: 271 KIADIMKKRQLFPYFDTAYQGFASG 295
>SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)
Length = 130
Score = 97.1 bits (231), Expect = 1e-20
Identities = 39/56 (69%), Positives = 50/56 (89%)
Frame = +3
Query: 24 STWWNNVXMGPPDVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEE 191
S+WW++V GPPD IL +TEA+K+DT+PKK+NLGVGAYRDD GKP+VLPSV+KA +
Sbjct: 49 SSWWSHVEAGPPDAILGVTEAFKRDTNPKKMNLGVGAYRDDTGKPYVLPSVKKASD 104
>SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = +3
Query: 135 YRDDEGKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI 299
YRD++GKP+VLP V K E L ++G LNHEY I G ++DA KL G D P I
Sbjct: 2 YRDNDGKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAI 60
Query: 300 -KNR 308
+NR
Sbjct: 61 AQNR 64
>SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 811
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 284 RQSCHQK*EQLYCTDIVRHWRTPTRTRVHNETLR 385
+Q CH K EQL D+ ++T +++NET R
Sbjct: 148 KQVCHDKYEQLPYDDVQNFFKTHISLKINNETFR 181
>SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 31.1 bits (67), Expect = 0.90
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Frame = +3
Query: 285 DSPVIKN---RSNCTVQTLSGTGALRLGLEFITKHYAKAKEI--WLPTPTWGNHPQICNT 449
D P++++ +SNC+V +G E ++HY K LP+ TW N +C
Sbjct: 3 DCPILQSELIKSNCSVADEYSSGT-HCAFECDSQHYLKGATTIACLPSGTWDNKQPVCIE 61
Query: 450 LNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSI 554
HK KT+ +GA + I GS+
Sbjct: 62 NATMHKSTPPATTKTS--KNKGASSQTATIAGGSV 94
>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
Length = 912
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 230 GSILMVESSTVKNFFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVCFCN 75
G ++ V S N L D+ + +S PK Y++ + + +CFCN
Sbjct: 411 GRLIEVVHSHNLNAVLLPDQLSGRRPKWEISFLGLPKFYWYNIMIYAICFCN 462
>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 60 DVILXITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGLNH 218
DV YK+D + NLGV AYR P +LP + +EI++++G+ +
Sbjct: 84 DVACDSYHKYKEDVQLLR-NLGVKAYRFSISWPRILP--KGTKEIINTKGIEY 133
>SB_33928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +3
Query: 288 SPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHK 467
S V ++ + ++T + TG L + +HY +++ P P W Q ++LN+
Sbjct: 177 SLVDESTLSAAIKTATITGTLSWDVRQALRHYVHQQDV--PVPAWPLMDQPLDSLNIASL 234
Query: 468 KYRY 479
+ RY
Sbjct: 235 RIRY 238
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +3
Query: 288 SPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHK 467
S V ++ + ++T + TG L + +HY +++ P P W Q ++LN+
Sbjct: 714 SLVDESTLSAAIKTATITGTLSWDVRQALRHYVHQQDV--PVPAWPLMDQPLDSLNIASL 771
Query: 468 KYRY 479
+ RY
Sbjct: 772 RIRY 775
>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1227
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 369 ITKHYAKAKEIWLPTPTWGNHPQICN 446
+T AK +WL P++GN PQ N
Sbjct: 92 VTHRSAKESRLWLSEPSYGNWPQQLN 117
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 175 TEGKTNGFPSSSLYAPTPRFTFL 107
++ KT GF SSS P PRF F+
Sbjct: 377 SQEKTKGFDSSSWMKPNPRFMFM 399
>SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 349 SAPVPDNVCTVQLLLFLMTGLSSPKASLATASVYVASPLMGAYSWLS 209
+ PV N+CTV ++ F++ GL +AT + V+ + W++
Sbjct: 24 AVPV-SNICTVFIIYFILRGLLHKTVKVATVARVVSDIIFSHPYWIT 69
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = -1
Query: 319 VQLLLFLMTGLSSPKASLATASVYVASPLMGAYSWLSPLL*RISSAFLTEGKTNGFPSSS 140
V + FLM GL+ +V V L+ A++W+S + + F ++ S
Sbjct: 873 VNQVFFLMLGLNQISGFCVAVAVIVHYFLLAAFAWMSVMAYDVMKTFASKAVLQASNSRK 932
Query: 139 LYAP--TPRFTFLGCVSFL 89
+ FTF V FL
Sbjct: 933 TFIKYCCAAFTFPAIVVFL 951
>SB_32472| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-08)
Length = 289
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/131 (19%), Positives = 59/131 (45%)
Frame = -1
Query: 601 LGSTPVGLCAHACNRIMEPSGIFDISSSAPCKSKPLVLGSK*RYFLCGKLRVLQICGWFP 422
LG++ V + + ++ P+ +F +S + + LV + ++C ++ L F
Sbjct: 26 LGNSTVVITILSYRQLHVPANLFLLSLALSDLATGLVSQT---LYICSLIQGLAGIKTFC 82
Query: 421 QVGVGSQISFALA*CFVMNSSPSRSAPVPDNVCTVQLLLFLMTGLSSPKASLATASVYVA 242
V +G+ I + + ++ D ++L + +T +++PKA + + V
Sbjct: 83 PVDLGALIGHFVGTILLTSTVSLLFLATADRFLAIELAMRYVTLVTTPKAIVVLTAAVVL 142
Query: 241 SPLMGAYSWLS 209
S L+G + LS
Sbjct: 143 SILLGTFHRLS 153
>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 141 DDEGKPFVLPSVRKAEEILHSRGLNHEYAPISGEA 245
D + KP + + +E +H++ + H+YA SGE+
Sbjct: 171 DIDQKPTANSKMDEKKEFIHAKYIKHQYAQKSGES 205
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 328 VCTVQLLLFLMTGLSSPKASLATASVYVASPLM 230
+CTV + L T L K SL S+Y+ PL+
Sbjct: 680 ICTVTMSLGFFTPLIPGKISLTLFSIYILLPLL 712
>SB_55281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 648 FPFFDHLGKLFPSRWAWGQHRW 583
F F + L FP+ W WG+ W
Sbjct: 147 FAFTNTLTYCFPAHWVWGEKGW 168
>SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8)
Length = 238
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 497 WFR-FAGSTRGYIKNSRRFHYSVARV 571
WF+ F+ T YI+++ R H+ VAR+
Sbjct: 109 WFKTFSYVTHSYIRSNNRRHFEVARI 134
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 328 VCTVQLLLFLMTGLSSPKASLATASVYVASPLM 230
+CTV +L+ + T L K S+ +YV SPL+
Sbjct: 154 ICTVTILVGVFTPLIPLKISVTLFLIYVFSPLL 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,604,463
Number of Sequences: 59808
Number of extensions: 620407
Number of successful extensions: 1596
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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