Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0629
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000023F0B6 Cluster: hypothetical protein FG09132.1; ...    33   5.9  
UniRef50_UPI000058722D Cluster: PREDICTED: similar to Ehf protei...    33   7.8  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   7.8  

>UniRef50_UPI000023F0B6 Cluster: hypothetical protein FG09132.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG09132.1 - Gibberella zeae PH-1
          Length = 209

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = -2

Query: 592 RSHGRVLHVAVGIATCTSVTGNCDCFDSSSNTV*NIHVFVAKTLVSLTRSLDALVLKC*W 413
           RS G   HV  G  TCT V+GNC   D+      N H  +A +   L   +D +   C W
Sbjct: 111 RSVGGQCHVGPGPRTCTRVSGNCQTADAIMLCNDNNHA-IAPSCGYLGDYVDHITSACAW 169


>UniRef50_UPI000058722D Cluster: PREDICTED: similar to Ehf protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to Ehf protein - Strongylocentrotus purpuratus
          Length = 510

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = -1

Query: 197 GLSLREFTNTSPSKSSASQGLPPDRNRDSLRKSSEKLNGLCLWVGSLVENLSHC 36
           G S  E   T+ + SS S G  P+RNR   R+ + K N L  ++  L+++ S+C
Sbjct: 378 GGSDEEHVVTTTTASSGSTGSSPNRNRGRGRREAMKGNHLWEFIRDLLKSESYC 431


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 55  TSEPTHKHSPLSFSLDFLSESRFRSG 132
           ++E  H+  PLSFS D LS SRFR+G
Sbjct: 387 STENEHRCCPLSFSPDLLSGSRFRTG 412


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,403,288
Number of Sequences: 1657284
Number of extensions: 10504507
Number of successful extensions: 22786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22783
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)