Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0629
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.8  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 35  NNDSNSRRANQPINTAH*VSRWIFSV 112
           N   N ++AN PI+T H    W++ +
Sbjct: 82  NYCDNKQQANPPISTEH--CDWLYGI 105


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 313 RLRLNAINPMRYVYV*CGRFTTCKVVIIFLMHTSISISEPRHLKIESTRQAFLQQ 477
           RL  N +N    V    GRFT  K  + +  + S   + PR L+   +    L++
Sbjct: 155 RLMSNNLNKNNVVAT--GRFTFHKKNLYYSFYISDKAARPRSLQFVDSEGNILEE 207


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 176 TNTSPSKSSASQGLPP 129
           T ++PS ++ + GLPP
Sbjct: 259 TGSAPSPTAGAGGLPP 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,080
Number of Sequences: 336
Number of extensions: 2865
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)