Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0629
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    30   0.25 
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.3  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 285 KVKWQCQIITSSIECY*SDAICICVMWPFYYMQSRDNFFNAYVH*HFRTKAS 440
           +V+WQCQ+  S + C  +D+  I   W   +   + N   +    H RTK S
Sbjct: 46  QVQWQCQLHESDLSCVVTDSEAIKKFWTSGFF-GKGNLSRSEPTWHTRTKRS 96


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 218 RAAR*SHGLSLREFTNTSPSKSSASQGLPPDRNRDSLRKSSEKLN 84
           R A   HG      TN      + + G P D+N  S  KS++KL+
Sbjct: 704 RGASLGHGRMSTSTTNRQKQILNETMGNPVDKNSTSPSKSTDKLD 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,253
Number of Sequences: 5004
Number of extensions: 46932
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)