Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0629
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1648 - 35036538-35037155                                         31   0.80 
03_02_0450 + 8600078-8600351,8600944-8601037,8601094-8601241,860...    29   2.4  

>04_04_1648 - 35036538-35037155
          Length = 205

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 485 TCICCKNACLVDSIFRCLGSEML-MDVCIKKIITTLHVVKRPH 360
           +C+CC   CL   +F CL S ++ + V +  +    +++ RPH
Sbjct: 9   SCLCCPCKCLACGLFSCLCSILISLLVTLGVLALIFYLIFRPH 51


>03_02_0450 +
           8600078-8600351,8600944-8601037,8601094-8601241,
           8602226-8602396,8602779-8602958,8603148-8603177,
           8603925-8604707
          Length = 559

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/55 (41%), Positives = 29/55 (52%)
 Frame = -2

Query: 220 YARLGDLTGSA*ENLLILALARAVLHKVYHRIGIATH*ENPARNSMGCVYGLVRS 56
           +AR GDLT +  ENLL  +  + VL  V    G+  + ENP   SM  V  LV S
Sbjct: 445 FARSGDLTVADVENLL-NSYKQLVLKYVALSQGMGINLENPPVQSMQTVSDLVES 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,274
Number of Sequences: 37544
Number of extensions: 282426
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)