Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0629
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16015.1 68417.m02430 DC1 domain-containing protein contains ...    29   2.0  
At3g55000.1 68416.m06104 tonneau family protein similar to tonne...    28   4.7  
At2g27505.1 68415.m03326 expressed protein ; expression supporte...    28   4.7  
At2g33390.1 68415.m04093 expressed protein                             27   8.2  

>At4g16015.1 68417.m02430 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 535

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 482 CICCKNACLVDSIFRCLGSEMLMDVCIKKIITTLH 378
           C CC++ C   SI R  G  +    C++K    LH
Sbjct: 497 CCCCESRCQFSSILRFYGKLICSLQCLQKKFQELH 531


>At3g55000.1 68416.m06104 tonneau family protein similar to tonneau
           1b (GI:11494367) [Arabidopsis thaliana]
          Length = 260

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 164 PSKSSASQGLPPDRNRDSLRKSSEKLNGL 78
           P +SSAS  LPP R   S  ++S++  GL
Sbjct: 172 PRRSSASDSLPPQRRPVSASQASDRRAGL 200


>At2g27505.1 68415.m03326 expressed protein ; expression supported
           by MPSS
          Length = 282

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = -2

Query: 586 HGRVLHVAVGIATCTSVTGNCDCFDSS--SNTV*NI--HVFVAKTLVSL 452
           HG V H+ V   TC  +  + D + S+  S +V ++  +V+V+KT+VSL
Sbjct: 75  HGGVQHLDVDAKTCGIIQSHPDIYKSTMCSPSVDSMPKYVYVSKTVVSL 123


>At2g33390.1 68415.m04093 expressed protein 
          Length = 98

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 159 QEQCFTRSTTGSESRLTEKIQRETQW 82
           + QC      G  SR T+KI+R  QW
Sbjct: 38  ESQCLLPPRKGGMSRSTDKIKRTVQW 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,648
Number of Sequences: 28952
Number of extensions: 236699
Number of successful extensions: 569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)