BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0625 (700 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_54124| Best HMM Match : AAA (HMM E-Value=7.8e-08) 29 4.8 SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 28 6.3 SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_7636| Best HMM Match : zf-CCHC (HMM E-Value=6.6) 28 8.4 >SB_54124| Best HMM Match : AAA (HMM E-Value=7.8e-08) Length = 251 Score = 28.7 bits (61), Expect = 4.8 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%) Frame = -2 Query: 546 ETEHGGDG----GPHRRGVRHRQRDVQQH 472 ET HGGDG G RGV +R R +++H Sbjct: 102 ETPHGGDGVWRPGHDLRGVPYRNRHLREH 130 >SB_25350| Best HMM Match : Collagen (HMM E-Value=0) Length = 1112 Score = 28.3 bits (60), Expect = 6.3 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = -2 Query: 354 PNVRGYAPRHHAQEEGKYRRVFIHHRPRSCNYH 256 P V + HH Q G YRR +H P YH Sbjct: 916 PPVSTFYHHHHHQHHGHYRRRRHYHHPYYPYYH 948 >SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1924 Score = 27.9 bits (59), Expect = 8.4 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -2 Query: 219 CKSGTCNGHLKRDSEKYRI 163 CK +GHL +DSE+YR+ Sbjct: 274 CKQCKLHGHLDKDSEEYRL 292 >SB_7636| Best HMM Match : zf-CCHC (HMM E-Value=6.6) Length = 349 Score = 27.9 bits (59), Expect = 8.4 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -2 Query: 219 CKSGTCNGHLKRDSEKYRI 163 CK +GHL +DSE+YR+ Sbjct: 274 CKQCKLHGHLDKDSEEYRL 292 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,061,815 Number of Sequences: 59808 Number of extensions: 301619 Number of successful extensions: 752 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 716 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 750 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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