Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0625
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54124| Best HMM Match : AAA (HMM E-Value=7.8e-08)                   29   4.8  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    28   6.3  
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_7636| Best HMM Match : zf-CCHC (HMM E-Value=6.6)                    28   8.4  

>SB_54124| Best HMM Match : AAA (HMM E-Value=7.8e-08)
          Length = 251

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = -2

Query: 546 ETEHGGDG----GPHRRGVRHRQRDVQQH 472
           ET HGGDG    G   RGV +R R +++H
Sbjct: 102 ETPHGGDGVWRPGHDLRGVPYRNRHLREH 130


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 354  PNVRGYAPRHHAQEEGKYRRVFIHHRPRSCNYH 256
            P V  +   HH Q  G YRR   +H P    YH
Sbjct: 916  PPVSTFYHHHHHQHHGHYRRRRHYHHPYYPYYH 948


>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1924

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 219 CKSGTCNGHLKRDSEKYRI 163
           CK    +GHL +DSE+YR+
Sbjct: 274 CKQCKLHGHLDKDSEEYRL 292


>SB_7636| Best HMM Match : zf-CCHC (HMM E-Value=6.6)
          Length = 349

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 219 CKSGTCNGHLKRDSEKYRI 163
           CK    +GHL +DSE+YR+
Sbjct: 274 CKQCKLHGHLDKDSEEYRL 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,061,815
Number of Sequences: 59808
Number of extensions: 301619
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)