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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0625
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01500.1 68417.m00193 DNA-binding protein, putative similar t...    27   9.0  
At2g10500.1 68415.m01106 hypothetical protein similar to At2g108...    27   9.0  

>At4g01500.1 68417.m00193 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857, RAV2 GI:3868859; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 328

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 345 RGYAPRHHAQEEGKYRRVFIHHRPRS 268
           RGY P  +AQ E + + +FI  RPR+
Sbjct: 116 RGYIPDDNAQPERRRKIMFIDWRPRA 141


>At2g10500.1 68415.m01106 hypothetical protein similar to At2g10840,
           At5g35280, At2g05860, At4g07310, At4g07430, At1g39270
          Length = 194

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -3

Query: 587 YRLSKFGNKVNSVTKLNTAAMGDLIDAAYDIG 492
           YRL+ F + ++   +++T+ + DL+ A YD+G
Sbjct: 67  YRLASFSSIIDD--EIDTSVLVDLVGAIYDVG 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,544,606
Number of Sequences: 28952
Number of extensions: 198855
Number of successful extensions: 435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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