BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0625 (700 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g01500.1 68417.m00193 DNA-binding protein, putative similar t... 27 9.0 At2g10500.1 68415.m01106 hypothetical protein similar to At2g108... 27 9.0 >At4g01500.1 68417.m00193 DNA-binding protein, putative similar to DNA-binding proteins from [Arabidopsis thaliana] RAV1 GI:3868857, RAV2 GI:3868859; contains Pfam profile PF02362: B3 DNA binding domain Length = 328 Score = 27.5 bits (58), Expect = 9.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 345 RGYAPRHHAQEEGKYRRVFIHHRPRS 268 RGY P +AQ E + + +FI RPR+ Sbjct: 116 RGYIPDDNAQPERRRKIMFIDWRPRA 141 >At2g10500.1 68415.m01106 hypothetical protein similar to At2g10840, At5g35280, At2g05860, At4g07310, At4g07430, At1g39270 Length = 194 Score = 27.5 bits (58), Expect = 9.0 Identities = 11/32 (34%), Positives = 22/32 (68%) Frame = -3 Query: 587 YRLSKFGNKVNSVTKLNTAAMGDLIDAAYDIG 492 YRL+ F + ++ +++T+ + DL+ A YD+G Sbjct: 67 YRLASFSSIIDD--EIDTSVLVDLVGAIYDVG 96 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,544,606 Number of Sequences: 28952 Number of extensions: 198855 Number of successful extensions: 435 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 435 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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