Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0623
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   1.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.0  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 445 HSTFKPFRYCGCDSMINVDFDXATHSITRS 534
           HS  KPFR   CD   +      TH  T S
Sbjct: 44  HSGEKPFRCPVCDRRFSQSSSVTTHMRTHS 73


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 445 HSTFKPFRYCGCDSMINVDFDXATHSITRS 534
           HS  KPFR   CD   +      TH  T S
Sbjct: 300 HSGEKPFRCPVCDRRFSQSSSVTTHMRTHS 329


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 583 QKPYTIXQYFKNTSVVKHFQLAHN 654
           Q P T    F +T +V HF   HN
Sbjct: 81  QSPQTQPARFYSTPIVPHFAYNHN 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,827
Number of Sequences: 336
Number of extensions: 2813
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)