BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0622 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 2.2 SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 2.9 SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 2.9 >SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 27.5 bits (58), Expect = 2.2 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -1 Query: 180 SICAQSAPSFTDW-KRDASGVRKSRT*LDNFILPERTSSVRLHFRY 46 ++C + + + DW +R +SG+++ T + I ER + HF Y Sbjct: 861 ALCDKMSEIWADWVQRTSSGIQEEDTIPNEMIDEERMLDLEKHFMY 906 >SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1689 Score = 27.1 bits (57), Expect = 2.9 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +2 Query: 350 SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 442 S + YK L Q + VK ++ + +ET S+Y++ Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112 >SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 574 Score = 27.1 bits (57), Expect = 2.9 Identities = 23/95 (24%), Positives = 40/95 (42%) Frame = +1 Query: 22 IFNIKLKXVTKVKANARRSLREDEIIELRS*FSHSRGVSFPISE*RRALSTNAGTRKMVN 201 ++N K RR+L D + L + SH ++ + R L+ + G +++N Sbjct: 9 VWNNKASVTINTVLYDRRALDCDSEMSLMNSLSHLVYLTSTSPKIREILTMDGGLMRLMN 68 Query: 202 YAWSGRXQGKP*WRTVAILTCKSIVGTGYRGERLI 306 +GR Q T+ L + +V G RG I Sbjct: 69 ILRAGRGQTFA-RMTIWQLALQCVVNVGIRGSEAI 102 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,846,517 Number of Sequences: 5004 Number of extensions: 55025 Number of successful extensions: 102 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 102 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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