Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0622
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1163 - 11011362-11011760,11011803-11011847,11011880-110120...    28   9.1  
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    28   9.1  

>07_01_1163 -
           11011362-11011760,11011803-11011847,11011880-11012014,
           11012101-11012994
          Length = 490

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = -2

Query: 398 FALPDETVLKFYIDASYPEGNFGRNQLLDGXISLSPLYPVPTIDLHVRIATVLHQGFP*X 219
           + + D   +K+YI    P      ++++    S  PL+P+  ++LH+R   + +  +   
Sbjct: 341 YVVIDYNFVKYYIAKCQPSRP---HKVIKNIRSYDPLHPIECMELHLRKVVIRY--YEGK 395

Query: 218 RPDQA*FTIFRVPAFVLR 165
           RPD      F + A VLR
Sbjct: 396 RPDVDFAKFFVLNAKVLR 413


>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 192 DGELCLVRSXSGETLMEDRSDSDVQIDRRNWV*GRKT 302
           DG+  +V + SGE    D+S  ++Q+D+  ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,173,461
Number of Sequences: 37544
Number of extensions: 393302
Number of successful extensions: 658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)